Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:03:35 (4043857): wrapper (7.7.26015): starting
15:03:35 (4043857): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 15:03:35] Arguments: --nthreads 6
[2025-10-13 15:03:35] Threads: 6
[2025-10-13 15:03:35] Checking for CVMFS
[2025-10-13 15:03:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:03:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:03:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:03:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:03:36] 2.12.7.0 249871 6926 94800 151650 3 188 14008412 20971521 929 130560 0 11806595 99.996 239381 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 15:03:36] CVMFS is ok
[2025-10-13 15:03:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:03:36] Checking for apptainer binary...
[2025-10-13 15:03:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:03:36] Running /usr/bin/apptainer --version
[2025-10-13 15:03:36] apptainer version 1.4.0-1.el9
[2025-10-13 15:03:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:03:36] testio005
[2025-10-13 15:03:36] apptainer works
[2025-10-13 15:03:36] Set ATHENA_PROC_NUMBER=6
[2025-10-13 15:03:36] Set ATHENA_CORE_NUMBER=6
[2025-10-13 15:03:36] Starting ATLAS job with PandaID=6840531172
[2025-10-13 15:03:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 16:34:12]  *** The last 200 lines of the pilot log: ***
[2025-10-13 16:34:12] 2025-10-13 07:33:14,537 | INFO     | time since job start (5367s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:15,774 | INFO     | monitor loop #415: job 0:6840531172 is in state 'finished'
[2025-10-13 16:34:12] 2025-10-13 07:33:15,774 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:34:12] 2025-10-13 07:33:16,543 | INFO     | time since job start (5369s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:18,277 | INFO     | monitor loop #416: job 0:6840531172 is in state 'finished'
[2025-10-13 16:34:12] 2025-10-13 07:33:18,278 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:34:12] 2025-10-13 07:33:18,548 | INFO     | time since job start (5371s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:19,656 | INFO     | PID=4047650 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 16:34:12] 2025-10-13 07:33:19,656 | INFO     | .. there are 2 such processes running
[2025-10-13 16:34:12] 2025-10-13 07:33:20,657 | INFO     | time since job start (5373s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:20,780 | INFO     | monitor loop #417: job 0:6840531172 is in state 'finished'
[2025-10-13 16:34:12] 2025-10-13 07:33:20,781 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:34:12] 2025-10-13 07:33:22,662 | INFO     | time since job start (5375s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:23,283 | INFO     | monitor loop #418: job 0:6840531172 is in state 'finished'
[2025-10-13 16:34:12] 2025-10-13 07:33:23,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:34:12] 2025-10-13 07:33:24,667 | INFO     | time since job start (5377s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:25,786 | INFO     | monitor loop #419: job 0:6840531172 is in state 'finished'
[2025-10-13 16:34:12] 2025-10-13 07:33:25,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:34:12] 2025-10-13 07:33:26,673 | INFO     | time since job start (5379s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:28,288 | INFO     | monitor loop #420: job 0:6840531172 is in state 'finished'
[2025-10-13 16:34:12] 2025-10-13 07:33:28,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:34:12] 2025-10-13 07:33:28,678 | INFO     | time since job start (5381s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:30,684 | INFO     | time since job start (5383s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:30,791 | INFO     | monitor loop #421: job 0:6840531172 is in state 'finished'
[2025-10-13 16:34:12] 2025-10-13 07:33:30,792 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:34:12] 2025-10-13 07:33:32,689 | INFO     | time since job start (5385s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:33,294 | INFO     | monitor loop #422: job 0:6840531172 is in state 'finished'
[2025-10-13 16:34:12] 2025-10-13 07:33:33,295 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:34:12] 2025-10-13 07:33:34,695 | INFO     | time since job start (5387s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:35,798 | INFO     | monitor loop #423: job 0:6840531172 is in state 'finished'
[2025-10-13 16:34:12] 2025-10-13 07:33:35,798 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:34:12] 2025-10-13 07:33:36,700 | INFO     | time since job start (5389s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:38,300 | INFO     | monitor loop #424: job 0:6840531172 is in state 'finished'
[2025-10-13 16:34:12] 2025-10-13 07:33:38,301 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 16:34:12] 2025-10-13 07:33:38,705 | INFO     | time since job start (5391s) is within the limit (172800.0s)
[2025-10-13 16:34:12] 2025-10-13 07:33:39,087 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 16:34:12] 2025-10-13 07:33:39,090 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3322.1988749999996
[2025-10-13 16:34:12] 2025-10-13 07:33:39,094 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840531172/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 16:34:12] 2025-10-13 07:33:39,094 | INFO     | extracted standard info from prmon json
[2025-10-13 16:34:12] 2025-10-13 07:33:39,094 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 16:34:12] 2025-10-13 07:33:39,094 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 16:34:12] 2025-10-13 07:33:39,095 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 16:34:12] 2025-10-13 07:33:39,095 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 16:34:12] 2025-10-13 07:33:39,097 | INFO     | fitting pss+swap vs Time
[2025-10-13 16:34:12] 2025-10-13 07:33:39,097 | INFO     | sum of square deviations: 158737860.0
[2025-10-13 16:34:12] 2025-10-13 07:33:39,097 | INFO     | sum of deviations: -6262067544.999999
[2025-10-13 16:34:12] 2025-10-13 07:33:39,097 | INFO     | mean x: 1760338164.5
[2025-10-13 16:34:12] 2025-10-13 07:33:39,098 | INFO     | mean y: 2508123.525
[2025-10-13 16:34:12] 2025-10-13 07:33:39,098 | INFO     | -- intersect: 69446284725.65582
[2025-10-13 16:34:12] 2025-10-13 07:33:39,098 | INFO     | intersect: 69446284725.65582
[2025-10-13 16:34:12] 2025-10-13 07:33:39,098 | INFO     | chi2: 0.06805689583760101
[2025-10-13 16:34:12] 2025-10-13 07:33:39,098 | INFO     | -- intersect: 69446284725.65582
[2025-10-13 16:34:12] 2025-10-13 07:33:39,098 | INFO     | current memory leak: -39.45 B/s (using 80 data points, chi2=0.07)
[2025-10-13 16:34:12] 2025-10-13 07:33:39,098 | INFO     | could have reported an average CPU frequency of 3322 MHz (6 samples)
[2025-10-13 16:34:12] 2025-10-13 07:33:39,099 | INFO     | ..............................
[2025-10-13 16:34:12] 2025-10-13 07:33:39,099 | INFO     | . Timing measurements:
[2025-10-13 16:34:12] 2025-10-13 07:33:39,099 | INFO     | . get job = 0 s
[2025-10-13 16:34:12] 2025-10-13 07:33:39,099 | INFO     | . initial setup = 5 s
[2025-10-13 16:34:12] 2025-10-13 07:33:39,099 | INFO     | . payload setup = 4 s
[2025-10-13 16:34:12] 2025-10-13 07:33:39,099 | INFO     | . stage-in = 0 s
[2025-10-13 16:34:12] 2025-10-13 07:33:39,099 | INFO     | . payload execution = 5291 s
[2025-10-13 16:34:12] 2025-10-13 07:33:39,099 | INFO     | . stage-out = 0 s
[2025-10-13 16:34:12] 2025-10-13 07:33:39,099 | INFO     | . log creation = 0 s
[2025-10-13 16:34:12] 2025-10-13 07:33:39,099 | INFO     | ..............................
[2025-10-13 16:34:12] 2025-10-13 07:33:39,453 | INFO     | 
[2025-10-13 16:34:12] 2025-10-13 07:33:39,453 | INFO     | job summary report
[2025-10-13 16:34:12] 2025-10-13 07:33:39,453 | INFO     | --------------------------------------------------
[2025-10-13 16:34:12] 2025-10-13 07:33:39,453 | INFO     | PanDA job id: 6840531172
[2025-10-13 16:34:12] 2025-10-13 07:33:39,453 | INFO     | task id: 46676269
[2025-10-13 16:34:12] 2025-10-13 07:33:39,453 | INFO     | errors: (none)
[2025-10-13 16:34:12] 2025-10-13 07:33:39,453 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 16:34:12] 2025-10-13 07:33:39,453 | INFO     | pilot state: finished 
[2025-10-13 16:34:12] 2025-10-13 07:33:39,453 | INFO     | transexitcode: 0
[2025-10-13 16:34:12] 2025-10-13 07:33:39,453 | INFO     | exeerrorcode: 0
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | exeerrordiag: 
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | exitcode: 0
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | exitmsg: OK
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | cpuconsumptiontime: 29329 s
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | nevents: 400
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | neventsw: 0
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | pid: 4054393
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | pgrp: 4054393
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | corecount: 6
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | event service: False
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 5300: 2375690, 5301: 2384744, 5378: 2384882}
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | --------------------------------------------------
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | 
[2025-10-13 16:34:12] 2025-10-13 07:33:39,454 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 16:34:12] 2025-10-13 07:33:39,467 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,468 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 16:34:12] 2025-10-13 07:33:39,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,469 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 16:34:12] 2025-10-13 07:33:39,469 | INFO     | job 6840531172 has completed (purged errors)
[2025-10-13 16:34:12] 2025-10-13 07:33:39,469 | INFO     | overall cleanup function is called
[2025-10-13 16:34:12] 2025-10-13 07:33:40,476 | INFO     | --- collectZombieJob: --- 10, [4054393]
[2025-10-13 16:34:12] 2025-10-13 07:33:40,476 | INFO     | zombie collector waiting for pid 4054393
[2025-10-13 16:34:12] 2025-10-13 07:33:40,476 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 16:34:12] 2025-10-13 07:33:40,476 | INFO     | collected zombie processes
[2025-10-13 16:34:12] 2025-10-13 07:33:40,476 | INFO     | will attempt to kill all subprocesses of pid=4054393
[2025-10-13 16:34:12] 2025-10-13 07:33:40,552 | INFO     | process IDs to be killed: [4054393] (in reverse order)
[2025-10-13 16:34:12] 2025-10-13 07:33:40,584 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 16:34:12] 2025-10-13 07:33:40,584 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 16:34:12] 2025-10-13 07:33:40,588 | INFO     | did not find any defunct processes belonging to 4054393
[2025-10-13 16:34:12] 2025-10-13 07:33:40,591 | INFO     | did not find any defunct processes belonging to 4054393
[2025-10-13 16:34:12] 2025-10-13 07:33:40,591 | INFO     | ready for new job
[2025-10-13 16:34:12] 2025-10-13 07:33:40,592 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 16:34:12] 2025-10-13 07:33:40,593 | INFO     | ***************************************
[2025-10-13 16:34:12] 2025-10-13 07:33:40,593 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 16:34:12] 2025-10-13 07:33:40,593 | INFO     | ***************************************
[2025-10-13 16:34:12] 2025-10-13 07:33:40,593 | INFO     | 
[2025-10-13 16:34:12] 2025-10-13 07:33:40,594 | INFO     | architecture information:
[2025-10-13 16:34:12] 2025-10-13 07:33:40,594 | INFO     | executing command: cat /etc/os-release
[2025-10-13 16:34:12] 2025-10-13 07:33:40,606 | INFO     | cat /etc/os-release:
[2025-10-13 16:34:12] NAME="CentOS Linux"
[2025-10-13 16:34:12] VERSION="7 (Core)"
[2025-10-13 16:34:12] ID="centos"
[2025-10-13 16:34:12] ID_LIKE="rhel fedora"
[2025-10-13 16:34:12] VERSION_ID="7"
[2025-10-13 16:34:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 16:34:12] ANSI_COLOR="0;31"
[2025-10-13 16:34:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 16:34:12] HOME_URL="https://www.centos.org/"
[2025-10-13 16:34:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 16:34:12] 
[2025-10-13 16:34:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 16:34:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 16:34:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 16:34:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 16:34:12] 
[2025-10-13 16:34:12] 2025-10-13 07:33:40,606 | INFO     | ***************************************
[2025-10-13 16:34:12] 2025-10-13 07:33:41,109 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 16:34:12] 2025-10-13 07:33:41,120 | INFO     | sufficient remaining disk space (96385105920 B)
[2025-10-13 16:34:12] 2025-10-13 07:33:41,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 16:34:12] 2025-10-13 07:33:41,121 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 16:34:12] 2025-10-13 07:33:41,121 | INFO     | update_server=False
[2025-10-13 16:34:12] 2025-10-13 07:33:41,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 16:34:12] 2025-10-13 07:33:41,121 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 16:34:12] 2025-10-13 07:33:41,121 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:34:12] 2025-10-13 07:33:41,301 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-10-13 16:34:12] 2025-10-13 07:33:41,809 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 16:34:12] 2025-10-13 07:33:41,809 | INFO     | aborting loop
[2025-10-13 16:34:12] 2025-10-13 07:33:41,859 | INFO     | all data control threads have been joined
[2025-10-13 16:34:12] 2025-10-13 07:33:42,126 | INFO     | [job] retrieve thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:42,127 | INFO     | [job] queue monitor thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:42,232 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:42,235 | INFO     | all payload control threads have been joined
[2025-10-13 16:34:12] 2025-10-13 07:33:42,376 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:42,402 | INFO     | [payload] validate_post thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:42,438 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 16:34:12] 2025-10-13 07:33:42,444 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:42,615 | INFO     | all job control threads have been joined
[2025-10-13 16:34:12] 2025-10-13 07:33:42,814 | INFO     | [job] job monitor thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:42,815 | INFO     | [data] copytool_in thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:42,865 | INFO     | [data] control thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:43,219 | INFO     | [payload] failed_post thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:43,240 | INFO     | [payload] control thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:43,318 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:43,578 | INFO     | [job] validate thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:43,620 | INFO     | [job] control thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:44,444 | INFO     | [data] copytool_out thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:45,127 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 16:34:12] 2025-10-13 07:33:54,297 | INFO     | [monitor] cgroup control has ended
[2025-10-13 16:34:12] 2025-10-13 07:33:54,900 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139759729465152)>', '<ExcThread(monitor, started 139759083046656)>']
[2025-10-13 16:34:12] 2025-10-13 07:33:59,926 | INFO     | all workflow threads have been joined
[2025-10-13 16:34:12] 2025-10-13 07:33:59,926 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 16:34:12] 2025-10-13 07:33:59,926 | INFO     | traces error code: 0
[2025-10-13 16:34:12] 2025-10-13 07:33:59,926 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 16:34:12] 2025-10-13 07:34:11,882 | INFO     | PID=4047650 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 16:34:12] 2025-10-13 07:34:11,884 | INFO     | .. there are 2 such processes running
[2025-10-13 16:34:12] 2025-10-13 07:34:11,884 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 16:34:12] 2025-10-13 07:34:11,884 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 16:34:12] 2025-10-13 07:34:11,885 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 16:34:12] 2025-10-13 07:34:11,885 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 16:34:12] 2025-10-13 07:34:11,885 | INFO     | [monitor] control thread has ended
[2025-10-13 16:34:12] 2025-10-13 07:34:11,957 [wrapper] ==== pilot stdout END ====
[2025-10-13 16:34:12] 2025-10-13 07:34:11,959 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 16:34:12] 2025-10-13 07:34:11,961 [wrapper] pilotpid: 4047650
[2025-10-13 16:34:12] 2025-10-13 07:34:11,963 [wrapper] Pilot exit status: 0
[2025-10-13 16:34:12] 2025-10-13 07:34:11,971 [wrapper] pandaids: 6840531172
[2025-10-13 16:34:12] 2025-10-13 07:34:11,997 [wrapper] cleanup supervisor_pilot 4093615 4047651
[2025-10-13 16:34:12] 2025-10-13 07:34:11,999 [wrapper] Test setup, not cleaning
[2025-10-13 16:34:12] 2025-10-13 07:34:12,001 [wrapper] apfmon messages muted
[2025-10-13 16:34:12] 2025-10-13 07:34:12,003 [wrapper] ==== wrapper stdout END ====
[2025-10-13 16:34:12] 2025-10-13 07:34:12,005 [wrapper] ==== wrapper stderr END ====
[2025-10-13 16:34:12]  *** Error codes and diagnostics ***
[2025-10-13 16:34:12]     "exeErrorCode": 0,
[2025-10-13 16:34:12]     "exeErrorDiag": "",
[2025-10-13 16:34:12]     "pilotErrorCode": 0,
[2025-10-13 16:34:12]     "pilotErrorDiag": "",
[2025-10-13 16:34:12]  *** Listing of results directory ***
[2025-10-13 16:34:12] total 412604
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc    557409 Oct 13 02:57 pilot3.tar.gz
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc      5112 Oct 13 03:04 queuedata.json
[2025-10-13 16:34:12] -rwx------. 1 boinc boinc     36292 Oct 13 03:04 runpilot2-wrapper.sh
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc       100 Oct 13 15:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 16:34:12] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 15:03 run_atlas
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc       105 Oct 13 15:03 job.xml
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc      9362 Oct 13 15:03 init_data.xml
[2025-10-13 16:34:12] -rw-r--r--. 2 boinc boinc 221068235 Oct 13 15:03 EVNT.46676267._004384.pool.root.1
[2025-10-13 16:34:12] -rw-r--r--. 2 boinc boinc     15120 Oct 13 15:03 start_atlas.sh
[2025-10-13 16:34:12] drwxrwx--x. 2 boinc boinc        68 Oct 13 15:03 shared
[2025-10-13 16:34:12] -rw-r--r--. 2 boinc boinc    569681 Oct 13 15:03 input.tar.gz
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc         0 Oct 13 15:03 boinc_lockfile
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc      2550 Oct 13 15:03 pandaJob.out
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc    973230 Oct 13 15:03 agis_schedconf.cvmfs.json
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc   1560580 Oct 13 15:03 agis_ddmendpoints.agis.ALL.json
[2025-10-13 16:34:12] drwx------. 5 boinc boinc      4096 Oct 13 15:03 pilot3
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc 195350595 Oct 13 16:31 HITS.46676269._085614.pool.root.1
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc       529 Oct 13 16:32 boinc_task_state.xml
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc      1018 Oct 13 16:32 memory_monitor_summary.json
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc    312030 Oct 13 16:32 log.46676269._085614.job.log.tgz.1
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc        95 Oct 13 16:33 pilot_heartbeat.json
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc      7753 Oct 13 16:33 heartbeat.json
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc        27 Oct 13 16:34 wrapper_checkpoint.txt
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc      8192 Oct 13 16:34 boinc_mmap_file
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc       822 Oct 13 16:34 pilotlog.txt
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc    787913 Oct 13 16:34 log.46676269._085614.job.log.1
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc       357 Oct 13 16:34 output.list
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc       620 Oct 13 16:34 runtime_log
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc   1116160 Oct 13 16:34 result.tar.gz
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc      8661 Oct 13 16:34 runtime_log.err
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc       642 Oct 13 16:34 ollLDmGcFS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmadUMDm5lNXgn.diag
[2025-10-13 16:34:12] -rw-r--r--. 1 boinc boinc     21924 Oct 13 16:34 stderr.txt
[2025-10-13 16:34:12] HITS file was successfully produced:
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc 195350595 Oct 13 16:31 shared/HITS.pool.root.1
[2025-10-13 16:34:12]  *** Contents of shared directory: ***
[2025-10-13 16:34:12] total 408332
[2025-10-13 16:34:12] -rw-r--r--. 2 boinc boinc 221068235 Oct 13 15:03 ATLAS.root_0
[2025-10-13 16:34:12] -rw-r--r--. 2 boinc boinc     15120 Oct 13 15:03 start_atlas.sh
[2025-10-13 16:34:12] -rw-r--r--. 2 boinc boinc    569681 Oct 13 15:03 input.tar.gz
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc 195350595 Oct 13 16:31 HITS.pool.root.1
[2025-10-13 16:34:12] -rw-------. 1 boinc boinc   1116160 Oct 13 16:34 result.tar.gz
16:34:13 (4043857): run_atlas exited; CPU time 29385.716411
16:34:13 (4043857): called boinc_finish(0)

</stderr_txt>
]]>

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