Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
10:01:40 (3027034): wrapper (7.7.26015): starting
10:01:40 (3027034): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 10:01:40] Arguments: --nthreads 4
[2025-10-13 10:01:40] Threads: 4
[2025-10-13 10:01:40] Checking for CVMFS
[2025-10-13 10:01:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:01:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:01:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:01:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:01:41] 2.13.1.0 3889163 5388 61692 151653 3 188 2864361 4096000 922 130560 0 9895626 99.996 188240 1653 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 10:01:41] CVMFS is ok
[2025-10-13 10:01:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:01:41] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 10:01:41] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 10:01:41] Further information can be found at the LHC@home message board.
[2025-10-13 10:01:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:01:41] Checking for apptainer binary...
[2025-10-13 10:01:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:01:41] Running /usr/bin/apptainer --version
[2025-10-13 10:01:41] apptainer version 1.2.3
[2025-10-13 10:01:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:01:41] Ryzen-7-7700-Zen4-Deb12
[2025-10-13 10:01:41] apptainer works
[2025-10-13 10:01:41] Set ATHENA_PROC_NUMBER=4
[2025-10-13 10:01:41] Set ATHENA_CORE_NUMBER=4
[2025-10-13 10:01:41] Starting ATLAS job with PandaID=6840536062
[2025-10-13 10:01:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 14:25:43]  *** The last 200 lines of the pilot log: ***
[2025-10-13 14:25:43]  status=None
[2025-10-13 14:25:43]  status_code=0
[2025-10-13 14:25:43]  storage_token=
[2025-10-13 14:25:43]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6840536062/log.46676269._086117.job.log.tgz.1
[2025-10-13 14:25:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/4f/log.46676269._086117.job.log.tgz.1
[2025-10-13 14:25:43]  workdir=None
[2025-10-13 14:25:43] ]
[2025-10-13 14:25:43] 2025-10-13 09:15:55,666 | INFO     | transferring file log.46676269._086117.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6840536062/log.46676269._086117.job.log.tgz.1 to /var/lib/boinc
[2025-10-13 14:25:43] 2025-10-13 09:15:55,666 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6840536062/log.46676269._086117.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.466762
[2025-10-13 14:25:43] 2025-10-13 09:15:55,705 | INFO     | adding to output.list: log.46676269._086117.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/4f/log.46676269._086117.job.log.tg
[2025-10-13 14:25:43] 2025-10-13 09:15:55,705 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 14:25:43] 2025-10-13 09:15:55,705 | INFO     | summary of transferred files:
[2025-10-13 14:25:43] 2025-10-13 09:15:55,705 | INFO     |  -- lfn=log.46676269._086117.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 14:25:43] 2025-10-13 09:15:55,706 | INFO     | stage-out finished correctly
[2025-10-13 14:25:43] 2025-10-13 09:15:55,969 | INFO     | time since job start (4448s) is within the limit (172800.0s)
[2025-10-13 14:25:43] 2025-10-13 09:15:56,304 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 14:25:43] 2025-10-13 09:15:57,461 | INFO     | job 6840536062 has state=finished
[2025-10-13 14:25:43] 2025-10-13 09:15:57,461 | INFO     | preparing for final server update for job 6840536062 in state='finished'
[2025-10-13 14:25:43] 2025-10-13 09:15:57,461 | INFO     | this job has now completed (state=finished)
[2025-10-13 14:25:43] 2025-10-13 09:15:57,461 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 14:25:43] 2025-10-13 09:15:57,461 | INFO     | log transfer has been attempted: DONE
[2025-10-13 14:25:43] 2025-10-13 09:15:57,461 | INFO     | job 6840536062 has finished - writing final server update
[2025-10-13 14:25:43] 2025-10-13 09:15:57,461 | INFO     | total number of processed events: 400 (read)
[2025-10-13 14:25:43] 2025-10-13 09:15:57,465 | INFO     | executing command: lscpu
[2025-10-13 14:25:43] 2025-10-13 09:15:57,485 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 14:25:43] 2025-10-13 09:15:57,973 | INFO     | time since job start (4450s) is within the limit (172800.0s)
[2025-10-13 14:25:43] 2025-10-13 09:15:58,012 | WARNING  | process 3037799 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 14:25:43] 2025-10-13 09:15:58,012 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6840536062/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 14:25:43] 2025-10-13 09:15:58,043 | INFO     | number of running child processes to parent process 3037799: 1
[2025-10-13 14:25:43] 2025-10-13 09:15:58,043 | INFO     | maximum number of monitored processes: 6
[2025-10-13 14:25:43] 2025-10-13 09:15:59,977 | INFO     | time since job start (4452s) is within the limit (172800.0s)
[2025-10-13 14:25:43] 2025-10-13 09:16:00,544 | INFO     | monitor loop #340: job 0:6840536062 is in state 'finished'
[2025-10-13 14:25:43] 2025-10-13 09:16:00,545 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 14:25:43] 2025-10-13 09:16:01,059 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 14:25:43] 2025-10-13 09:16:01,060 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4846.831499999999
[2025-10-13 14:25:43] 2025-10-13 09:16:01,061 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6840536062/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 14:25:43] 2025-10-13 09:16:01,062 | INFO     | extracted standard info from prmon json
[2025-10-13 14:25:43] 2025-10-13 09:16:01,062 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 14:25:43] 2025-10-13 09:16:01,062 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 14:25:43] 2025-10-13 09:16:01,062 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 14:25:43] 2025-10-13 09:16:01,062 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | fitting pss+swap vs Time
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | sum of square deviations: 89127252.5
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | sum of deviations: -1725359227.4999998
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | mean x: 1760344812.5
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | mean y: 2371070.4696969697
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | -- intersect: 34079794985.546986
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | intersect: 34079794985.546986
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | chi2: 0.03312637918184798
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | -- intersect: 34079794985.546986
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | current memory leak: -19.36 B/s (using 66 data points, chi2=0.03)
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | could have reported an average CPU frequency of 4867 MHz (6 samples)
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | ..............................
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | . Timing measurements:
[2025-10-13 14:25:43] 2025-10-13 09:16:01,063 | INFO     | . get job = 0 s
[2025-10-13 14:25:43] 2025-10-13 09:16:01,064 | INFO     | . initial setup = 1 s
[2025-10-13 14:25:43] 2025-10-13 09:16:01,064 | INFO     | . payload setup = 2 s
[2025-10-13 14:25:43] 2025-10-13 09:16:01,064 | INFO     | . stage-in = 0 s
[2025-10-13 14:25:43] 2025-10-13 09:16:01,064 | INFO     | . payload execution = 4428 s
[2025-10-13 14:25:43] 2025-10-13 09:16:01,064 | INFO     | . stage-out = 0 s
[2025-10-13 14:25:43] 2025-10-13 09:16:01,064 | INFO     | . log creation = 0 s
[2025-10-13 14:25:43] 2025-10-13 09:16:01,064 | INFO     | ..............................
[2025-10-13 14:25:43] 2025-10-13 09:16:01,175 | INFO     | 
[2025-10-13 14:25:43] 2025-10-13 09:16:01,175 | INFO     | job summary report
[2025-10-13 14:25:43] 2025-10-13 09:16:01,175 | INFO     | --------------------------------------------------
[2025-10-13 14:25:43] 2025-10-13 09:16:01,175 | INFO     | PanDA job id: 6840536062
[2025-10-13 14:25:43] 2025-10-13 09:16:01,175 | INFO     | task id: 46676269
[2025-10-13 14:25:43] 2025-10-13 09:16:01,175 | INFO     | errors: (none)
[2025-10-13 14:25:43] 2025-10-13 09:16:01,175 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | pilot state: finished 
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | transexitcode: 0
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | exeerrorcode: 0
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | exeerrordiag: 
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | exitcode: 0
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | exitmsg: OK
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | cpuconsumptiontime: 17162 s
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | nevents: 400
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | neventsw: 0
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | pid: 3037799
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | pgrp: 3037799
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | corecount: 4
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | event service: False
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | sizes: {0: 2348864, 2: 2349126, 10: 2349154, 4434: 2375407, 4436: 2384475, 4441: 2384613}
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | --------------------------------------------------
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | 
[2025-10-13 14:25:43] 2025-10-13 09:16:01,176 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 14:25:43] 2025-10-13 09:16:01,189 | INFO     | job 6840536062 has completed (purged errors)
[2025-10-13 14:25:43] 2025-10-13 09:16:01,190 | INFO     | overall cleanup function is called
[2025-10-13 14:25:43] 2025-10-13 09:16:02,192 | INFO     | --- collectZombieJob: --- 10, [3037799]
[2025-10-13 14:25:43] 2025-10-13 09:16:02,193 | INFO     | zombie collector waiting for pid 3037799
[2025-10-13 14:25:43] 2025-10-13 09:16:02,193 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 14:25:43] 2025-10-13 09:16:02,193 | INFO     | collected zombie processes
[2025-10-13 14:25:43] 2025-10-13 09:16:02,193 | INFO     | will attempt to kill all subprocesses of pid=3037799
[2025-10-13 14:25:43] 2025-10-13 09:16:02,235 | INFO     | process IDs to be killed: [3037799] (in reverse order)
[2025-10-13 14:25:43] 2025-10-13 09:16:02,262 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 14:25:43] 2025-10-13 09:16:02,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 14:25:43] 2025-10-13 09:16:02,263 | INFO     | did not find any defunct processes belonging to 3037799
[2025-10-13 14:25:43] 2025-10-13 09:16:02,264 | INFO     | did not find any defunct processes belonging to 3037799
[2025-10-13 14:25:43] 2025-10-13 09:16:02,264 | INFO     | ready for new job
[2025-10-13 14:25:43] 2025-10-13 09:16:02,268 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 14:25:43] 2025-10-13 09:16:02,269 | INFO     | ***************************************
[2025-10-13 14:25:43] 2025-10-13 09:16:02,269 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 14:25:43] 2025-10-13 09:16:02,269 | INFO     | ***************************************
[2025-10-13 14:25:43] 2025-10-13 09:16:02,269 | INFO     | 
[2025-10-13 14:25:43] 2025-10-13 09:16:02,270 | INFO     | architecture information:
[2025-10-13 14:25:43] 2025-10-13 09:16:02,270 | INFO     | executing command: cat /etc/os-release
[2025-10-13 14:25:43] 2025-10-13 09:16:02,285 | INFO     | cat /etc/os-release:
[2025-10-13 14:25:43] NAME="CentOS Linux"
[2025-10-13 14:25:43] VERSION="7 (Core)"
[2025-10-13 14:25:43] ID="centos"
[2025-10-13 14:25:43] ID_LIKE="rhel fedora"
[2025-10-13 14:25:43] VERSION_ID="7"
[2025-10-13 14:25:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 14:25:43] ANSI_COLOR="0;31"
[2025-10-13 14:25:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 14:25:43] HOME_URL="https://www.centos.org/"
[2025-10-13 14:25:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 14:25:43] 
[2025-10-13 14:25:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 14:25:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 14:25:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 14:25:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 14:25:43] 
[2025-10-13 14:25:43] 2025-10-13 09:16:02,285 | INFO     | ***************************************
[2025-10-13 14:25:43] 2025-10-13 09:16:02,788 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-13 14:25:43] 2025-10-13 09:16:02,801 | INFO     | sufficient remaining disk space (883210321920 B)
[2025-10-13 14:25:43] 2025-10-13 09:16:02,801 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 14:25:43] 2025-10-13 09:16:02,801 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 14:25:43] 2025-10-13 09:16:02,801 | INFO     | update_server=False
[2025-10-13 14:25:43] 2025-10-13 09:16:02,801 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 14:25:43] 2025-10-13 09:16:02,801 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:25:43] 2025-10-13 09:16:02,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 14:25:43] 2025-10-13 09:16:02,992 | INFO     | all payload control threads have been joined
[2025-10-13 14:25:43] 2025-10-13 09:16:03,006 | INFO     | all job control threads have been joined
[2025-10-13 14:25:43] 2025-10-13 09:16:03,047 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 14:25:43] 2025-10-13 09:16:03,048 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 14:25:43] 2025-10-13 09:16:03,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:25:43] 2025-10-13 09:16:03,048 | INFO     | will abort loop
[2025-10-13 14:25:43] 2025-10-13 09:16:03,588 | INFO     | all data control threads have been joined
[2025-10-13 14:25:43] 2025-10-13 09:16:03,748 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 14:25:43] 2025-10-13 09:16:03,804 | INFO     | [job] retrieve thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:03,806 | INFO     | [job] queue monitor thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:03,852 | INFO     | [data] copytool_in thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:03,972 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:03,996 | INFO     | [payload] control thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:04,008 | INFO     | [job] control thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:04,044 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:04,052 | INFO     | [job] job monitor thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:04,112 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:04,592 | INFO     | [data] control thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:05,016 | INFO     | [job] validate thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:05,132 | INFO     | [payload] failed_post thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:05,204 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:05,304 | INFO     | [payload] validate_post thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:05,752 | INFO     | [data] copytool_out thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:06,804 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 14:25:43] 2025-10-13 09:16:33,034 | INFO     | PID=3031112 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 14:25:43] 2025-10-13 09:16:33,034 | INFO     | .. there are 2 such processes running
[2025-10-13 14:25:43] 2025-10-13 09:16:33,062 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 14:25:43] 2025-10-13 09:16:33,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 14:25:43] 2025-10-13 09:16:33,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 14:25:43] 2025-10-13 09:16:46,273 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-13 14:25:43] 2025-10-13 09:16:54,724 | INFO     | [monitor] cgroup control has ended
[2025-10-13 14:25:43] 2025-10-13 09:16:55,976 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140207157892928)>', '<ExcThread(monitor, started 140206447519488)>']
[2025-10-13 14:25:43] 2025-10-13 09:16:56,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 14:25:43] 2025-10-13 09:16:56,153 | INFO     | [monitor] control thread has ended
[2025-10-13 14:25:43] 2025-10-13 09:17:01,000 | INFO     | all workflow threads have been joined
[2025-10-13 14:25:43] 2025-10-13 09:17:01,001 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 14:25:43] 2025-10-13 09:17:01,001 | INFO     | traces error code: 0
[2025-10-13 14:25:43] 2025-10-13 09:17:01,001 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 14:25:43] 2025-10-13 09:17:01,077 [wrapper] ==== pilot stdout END ====
[2025-10-13 14:25:43] 2025-10-13 09:17:01,078 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 14:25:43] 2025-10-13 09:17:01,080 [wrapper] pilotpid: 3031112
[2025-10-13 14:25:43] 2025-10-13 09:17:01,081 [wrapper] Pilot exit status: 0
[2025-10-13 14:25:43] 2025-10-13 09:17:01,087 [wrapper] pandaids: 6840536062
[2025-10-13 14:25:43] 2025-10-13 09:17:01,099 [wrapper] cleanup supervisor_pilot 3083170 3031113
[2025-10-13 14:25:43] 2025-10-13 09:17:01,101 [wrapper] Test setup, not cleaning
[2025-10-13 14:25:43] 2025-10-13 09:17:01,102 [wrapper] apfmon messages muted
[2025-10-13 14:25:43] 2025-10-13 09:17:01,105 [wrapper] ==== wrapper stdout END ====
[2025-10-13 14:25:43] 2025-10-13 09:17:01,109 [wrapper] ==== wrapper stderr END ====
[2025-10-13 14:25:43]  *** Error codes and diagnostics ***
[2025-10-13 14:25:43]     "exeErrorCode": 0,
[2025-10-13 14:25:43]     "exeErrorDiag": "",
[2025-10-13 14:25:43]     "pilotErrorCode": 0,
[2025-10-13 14:25:43]     "pilotErrorDiag": "",
[2025-10-13 14:25:43]  *** Listing of results directory ***
[2025-10-13 14:25:43] total 408176
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:20 pilot3.tar.gz
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc      5112 Oct 12 20:28 queuedata.json
[2025-10-13 14:25:43] -rwx------ 1 boinc boinc     36292 Oct 12 20:28 runpilot2-wrapper.sh
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc       100 Oct 13 10:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 14:25:43] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 10:01 run_atlas
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc       105 Oct 13 10:01 job.xml
[2025-10-13 14:25:43] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:01 start_atlas.sh
[2025-10-13 14:25:43] drwxrwx--x 2 boinc boinc      4096 Oct 13 10:01 shared
[2025-10-13 14:25:43] -rw-r--r-- 2 boinc boinc    569684 Oct 13 10:01 input.tar.gz
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc      6737 Oct 13 10:01 init_data.xml
[2025-10-13 14:25:43] -rw-r--r-- 2 boinc boinc 221980244 Oct 13 10:01 EVNT.46676267._004404.pool.root.1
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:01 boinc_lockfile
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc      2550 Oct 13 10:01 pandaJob.out
[2025-10-13 14:25:43] -rw------- 1 boinc boinc    972849 Oct 13 10:01 agis_schedconf.cvmfs.json
[2025-10-13 14:25:43] -rw------- 1 boinc boinc   1560580 Oct 13 10:01 agis_ddmendpoints.agis.ALL.json
[2025-10-13 14:25:43] drwx------ 5 boinc boinc      4096 Oct 13 10:01 pilot3
[2025-10-13 14:25:43] -rw------- 1 boinc boinc 190181553 Oct 13 11:15 HITS.46676269._086117.pool.root.1
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc       529 Oct 13 11:15 boinc_task_state.xml
[2025-10-13 14:25:43] -rw------- 1 boinc boinc      1018 Oct 13 11:15 memory_monitor_summary.json
[2025-10-13 14:25:43] -rw------- 1 boinc boinc    272272 Oct 13 11:15 log.46676269._086117.job.log.tgz.1
[2025-10-13 14:25:43] -rw------- 1 boinc boinc      7748 Oct 13 11:16 heartbeat.json
[2025-10-13 14:25:43] -rw------- 1 boinc boinc        95 Oct 13 11:16 pilot_heartbeat.json
[2025-10-13 14:25:43] -rw------- 1 boinc boinc      5017 Oct 13 11:17 pilotlog.txt
[2025-10-13 14:25:43] -rw------- 1 boinc boinc    677559 Oct 13 11:17 log.46676269._086117.job.log.1
[2025-10-13 14:25:43] -rw------- 1 boinc boinc       357 Oct 13 11:17 output.list
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc       620 Oct 13 11:17 runtime_log
[2025-10-13 14:25:43] -rw------- 1 boinc boinc    972800 Oct 13 11:17 result.tar.gz
[2025-10-13 14:25:43] -rw------- 1 boinc boinc       655 Oct 13 11:17 z7ULDmUzFS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm83kNDmk9vLhn.diag
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc      8826 Oct 13 11:17 runtime_log.err
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc      8192 Oct 13 14:25 boinc_mmap_file
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc        27 Oct 13 14:25 wrapper_checkpoint.txt
[2025-10-13 14:25:43] -rw-r--r-- 1 boinc boinc     22074 Oct 13 14:25 stderr.txt
[2025-10-13 14:25:43] HITS file was successfully produced:
[2025-10-13 14:25:43] -rw------- 1 boinc boinc 190181553 Oct 13 11:15 shared/HITS.pool.root.1
[2025-10-13 14:25:43]  *** Contents of shared directory: ***
[2025-10-13 14:25:43] total 404044
[2025-10-13 14:25:43] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:01 start_atlas.sh
[2025-10-13 14:25:43] -rw-r--r-- 2 boinc boinc    569684 Oct 13 10:01 input.tar.gz
[2025-10-13 14:25:43] -rw-r--r-- 2 boinc boinc 221980244 Oct 13 10:01 ATLAS.root_0
[2025-10-13 14:25:43] -rw------- 1 boinc boinc 190181553 Oct 13 11:15 HITS.pool.root.1
[2025-10-13 14:25:43] -rw------- 1 boinc boinc    972800 Oct 13 11:17 result.tar.gz
14:25:45 (3027034): run_atlas exited; CPU time 17179.757831
14:25:45 (3027034): called boinc_finish(0)

</stderr_txt>
]]>

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