Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:08:14 (1237375): wrapper (7.7.26015): starting
17:08:14 (1237375): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 17:08:14] Arguments: --nthreads 4
[2025-10-13 17:08:14] Threads: 4
[2025-10-13 17:08:14] Checking for CVMFS
[2025-10-13 17:08:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 17:08:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 17:08:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 17:08:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 17:08:14] 2.9.2.0 3256619 5992 99992 151664 3 57 3617729 36864000 0 130560 0 5375397 99.992 200217 722 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 17:08:14] CVMFS is ok
[2025-10-13 17:08:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 17:08:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 17:08:14] Further information can be found at the LHC@home message board.
[2025-10-13 17:08:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:08:14] Checking for apptainer binary...
[2025-10-13 17:08:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 17:08:14] Running /usr/bin/apptainer --version
[2025-10-13 17:08:14] apptainer version 1.4.1-1.1
[2025-10-13 17:08:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:08:15] thA330
[2025-10-13 17:08:15] apptainer works
[2025-10-13 17:08:15] Set ATHENA_PROC_NUMBER=4
[2025-10-13 17:08:15] Set ATHENA_CORE_NUMBER=4
[2025-10-13 17:08:15] Starting ATLAS job with PandaID=6840392503
[2025-10-13 17:08:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:17:33]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:17:33] 2025-10-13 16:16:27,314 | INFO     | --- collectZombieJob: --- 10, [1247731]
[2025-10-13 18:17:33] 2025-10-13 16:16:27,314 | INFO     | zombie collector waiting for pid 1247731
[2025-10-13 18:17:33] 2025-10-13 16:16:27,314 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:17:33] 2025-10-13 16:16:27,314 | INFO     | collected zombie processes
[2025-10-13 18:17:33] 2025-10-13 16:16:27,314 | INFO     | will attempt to kill all subprocesses of pid=1247731
[2025-10-13 18:17:33] 2025-10-13 16:16:27,364 | INFO     | process IDs to be killed: [1247731] (in reverse order)
[2025-10-13 18:17:33] 2025-10-13 16:16:27,400 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:17:33] 2025-10-13 16:16:27,400 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:17:33] 2025-10-13 16:16:27,402 | INFO     | did not find any defunct processes belonging to 1247731
[2025-10-13 18:17:33] 2025-10-13 16:16:27,404 | INFO     | did not find any defunct processes belonging to 1247731
[2025-10-13 18:17:33] 2025-10-13 16:16:27,404 | INFO     | ready for new job
[2025-10-13 18:17:33] 2025-10-13 16:16:27,404 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:17:33] 2025-10-13 16:16:27,405 | INFO     | ***************************************
[2025-10-13 18:17:33] 2025-10-13 16:16:27,405 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 18:17:33] 2025-10-13 16:16:27,405 | INFO     | ***************************************
[2025-10-13 18:17:33] 2025-10-13 16:16:27,405 | INFO     | 
[2025-10-13 18:17:33] 2025-10-13 16:16:27,405 | INFO     | architecture information:
[2025-10-13 18:17:33] 2025-10-13 16:16:27,405 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:17:33] 2025-10-13 16:16:27,420 | INFO     | cat /etc/os-release:
[2025-10-13 18:17:33] NAME="CentOS Linux"
[2025-10-13 18:17:33] VERSION="7 (Core)"
[2025-10-13 18:17:33] ID="centos"
[2025-10-13 18:17:33] ID_LIKE="rhel fedora"
[2025-10-13 18:17:33] VERSION_ID="7"
[2025-10-13 18:17:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:17:33] ANSI_COLOR="0;31"
[2025-10-13 18:17:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:17:33] HOME_URL="https://www.centos.org/"
[2025-10-13 18:17:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:17:33] 
[2025-10-13 18:17:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:17:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:17:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:17:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:17:33] 
[2025-10-13 18:17:33] 2025-10-13 16:16:27,420 | INFO     | ***************************************
[2025-10-13 18:17:33] 2025-10-13 16:16:27,923 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 18:17:33] 2025-10-13 16:16:27,941 | INFO     | sufficient remaining disk space (256326500352 B)
[2025-10-13 18:17:33] 2025-10-13 16:16:27,941 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:17:33] 2025-10-13 16:16:27,941 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:17:33] 2025-10-13 16:16:27,941 | INFO     | update_server=False
[2025-10-13 18:17:33] 2025-10-13 16:16:27,941 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:17:33] 2025-10-13 16:16:27,941 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:17:33] 2025-10-13 16:16:27,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:17:33] 2025-10-13 16:16:28,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:17:33] 2025-10-13 16:16:28,122 | INFO     | aborting loop
[2025-10-13 18:17:33] 2025-10-13 16:16:28,292 | INFO     | all job control threads have been joined
[2025-10-13 18:17:33] 2025-10-13 16:16:28,733 | INFO     | all payload control threads have been joined
[2025-10-13 18:17:33] 2025-10-13 16:16:28,784 | INFO     | all data control threads have been joined
[2025-10-13 18:17:33] 2025-10-13 16:16:28,947 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:28,947 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:29,095 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:29,126 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:29,128 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:29,298 | INFO     | [job] control thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:29,485 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:29,739 | INFO     | [payload] control thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:29,790 | INFO     | [data] control thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:29,947 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:29,977 | INFO     | [job] validate thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:30,092 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:30,146 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:30,156 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:30,941 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:17:33] 2025-10-13 16:16:34,948 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:38,741 | INFO     | job.realtimelogging is not enabled
[2025-10-13 18:17:33] 2025-10-13 16:16:39,746 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:17:33] 2025-10-13 16:16:58,547 | INFO     | PID=1241162 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 18:17:33] 2025-10-13 16:16:58,548 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:17:33] 2025-10-13 16:16:58,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:17:33] 2025-10-13 16:16:58,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:17:33] 2025-10-13 16:17:27,142 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:17:33] 2025-10-13 16:17:28,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140348132505408)>', '<ExcThread(monitor, started 140346906371840)>']
[2025-10-13 18:17:33] 2025-10-13 16:17:28,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:17:33] 2025-10-13 16:17:28,704 | INFO     | [monitor] control thread has ended
[2025-10-13 18:17:33] 2025-10-13 16:17:33,562 | INFO     | all workflow threads have been joined
[2025-10-13 18:17:33] 2025-10-13 16:17:33,562 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:17:33] 2025-10-13 16:17:33,563 | INFO     | traces error code: 0
[2025-10-13 18:17:33] 2025-10-13 16:17:33,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:17:33] 2025-10-13 16:17:33,642 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:17:33] 2025-10-13 16:17:33,646 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:17:33] 2025-10-13 16:17:33,650 [wrapper] pilotpid: 1241162
[2025-10-13 18:17:33] 2025-10-13 16:17:33,655 [wrapper] Pilot exit status: 0
[2025-10-13 18:17:33] 2025-10-13 16:17:33,667 [wrapper] pandaids: 6840392503
[2025-10-13 18:17:33] 2025-10-13 16:17:33,693 [wrapper] cleanup supervisor_pilot 1258651 1241163
[2025-10-13 18:17:33] 2025-10-13 16:17:33,696 [wrapper] Test setup, not cleaning
[2025-10-13 18:17:33] 2025-10-13 16:17:33,701 [wrapper] apfmon messages muted
[2025-10-13 18:17:33] 2025-10-13 16:17:33,705 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:17:33] 2025-10-13 16:17:33,708 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:17:33]  *** Error codes and diagnostics ***
[2025-10-13 18:17:33]     "exeErrorCode": 0,
[2025-10-13 18:17:33]     "exeErrorDiag": "",
[2025-10-13 18:17:33]     "pilotErrorCode": 0,
[2025-10-13 18:17:33]     "pilotErrorDiag": "",
[2025-10-13 18:17:33]  *** Listing of results directory ***
[2025-10-13 18:17:33] total 406628
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc    563267 Oct  7 09:02 pilot3.tar.gz
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc      5112 Oct 12 18:43 queuedata.json
[2025-10-13 18:17:33] -rwx------ 1 boinc boinc     36292 Oct 12 18:44 runpilot2-wrapper.sh
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc       100 Oct 13 17:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:17:33] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 17:08 run_atlas
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc       105 Oct 13 17:08 job.xml
[2025-10-13 18:17:33] -rw-r--r-- 2 boinc boinc 220473628 Oct 13 17:08 EVNT.46676267._004786.pool.root.1
[2025-10-13 18:17:33] -rw-r--r-- 2 boinc boinc    576717 Oct 13 17:08 input.tar.gz
[2025-10-13 18:17:33] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:08 start_atlas.sh
[2025-10-13 18:17:33] drwxrwx--x 2 boinc boinc      4096 Oct 13 17:08 shared
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:08 boinc_setup_complete
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc      6454 Oct 13 17:08 init_data.xml
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:08 boinc_lockfile
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc      2549 Oct 13 17:08 pandaJob.out
[2025-10-13 18:17:33] -rw------- 1 boinc boinc    972791 Oct 13 17:08 agis_schedconf.cvmfs.json
[2025-10-13 18:17:33] -rw------- 1 boinc boinc   1560580 Oct 13 17:08 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:17:33] drwx------ 4 boinc boinc      4096 Oct 13 17:08 pilot3
[2025-10-13 18:17:33] -rw------- 1 boinc boinc 190317132 Oct 13 18:15 HITS.46676269._083964.pool.root.1
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc       529 Oct 13 18:16 boinc_task_state.xml
[2025-10-13 18:17:33] -rw------- 1 boinc boinc      1019 Oct 13 18:16 memory_monitor_summary.json
[2025-10-13 18:17:33] -rw------- 1 boinc boinc    240329 Oct 13 18:16 log.46676269._083964.job.log.tgz.1
[2025-10-13 18:17:33] -rw------- 1 boinc boinc      7753 Oct 13 18:16 heartbeat.json
[2025-10-13 18:17:33] -rw------- 1 boinc boinc        95 Oct 13 18:16 pilot_heartbeat.json
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc      8192 Oct 13 18:17 boinc_mmap_file
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc        27 Oct 13 18:17 wrapper_checkpoint.txt
[2025-10-13 18:17:33] -rw------- 1 boinc boinc      4824 Oct 13 18:17 pilotlog.txt
[2025-10-13 18:17:33] -rw------- 1 boinc boinc    606179 Oct 13 18:17 log.46676269._083964.job.log.1
[2025-10-13 18:17:33] -rw------- 1 boinc boinc       357 Oct 13 18:17 output.list
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc       620 Oct 13 18:17 runtime_log
[2025-10-13 18:17:33] -rw------- 1 boinc boinc    870400 Oct 13 18:17 result.tar.gz
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc      8777 Oct 13 18:17 runtime_log.err
[2025-10-13 18:17:33] -rw------- 1 boinc boinc       658 Oct 13 18:17 LUVLDmPMES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3hkNDmCh9BWn.diag
[2025-10-13 18:17:33] -rw-r--r-- 1 boinc boinc     10706 Oct 13 18:17 stderr.txt
[2025-10-13 18:17:33] HITS file was successfully produced:
[2025-10-13 18:17:33] -rw------- 1 boinc boinc 190317132 Oct 13 18:15 shared/HITS.pool.root.1
[2025-10-13 18:17:33]  *** Contents of shared directory: ***
[2025-10-13 18:17:33] total 402608
[2025-10-13 18:17:33] -rw-r--r-- 2 boinc boinc 220473628 Oct 13 17:08 ATLAS.root_0
[2025-10-13 18:17:33] -rw-r--r-- 2 boinc boinc    576717 Oct 13 17:08 input.tar.gz
[2025-10-13 18:17:33] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:08 start_atlas.sh
[2025-10-13 18:17:33] -rw------- 1 boinc boinc 190317132 Oct 13 18:15 HITS.pool.root.1
[2025-10-13 18:17:33] -rw------- 1 boinc boinc    870400 Oct 13 18:17 result.tar.gz
18:17:35 (1237375): run_atlas exited; CPU time 15284.329185
18:17:35 (1237375): called boinc_finish(0)

</stderr_txt>
]]>

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