Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:04:18 (5912): wrapper (7.7.26015): starting
18:04:18 (5912): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 18:04:18] Arguments: --nthreads 8
[2025-10-12 18:04:18] Threads: 8
[2025-10-12 18:04:18] Checking for CVMFS
[2025-10-12 18:04:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:04:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:04:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:04:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:04:18] 2.11.2.0 3733 53476 125156 151638 1 61 14651912 18432000 1833 130560 0 48450538 99.975 2400023 39122 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 18:04:18] CVMFS is ok
[2025-10-12 18:04:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:04:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:04:18] Further information can be found at the LHC@home message board.
[2025-10-12 18:04:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:04:18] Checking for apptainer binary...
[2025-10-12 18:04:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:04:18] Running /usr/bin/apptainer --version
[2025-10-12 18:04:18] apptainer version 1.3.2-1.el7
[2025-10-12 18:04:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:04:19] c-206-23.aglt2.org
[2025-10-12 18:04:19] apptainer works
[2025-10-12 18:04:19] Set ATHENA_PROC_NUMBER=8
[2025-10-12 18:04:19] Set ATHENA_CORE_NUMBER=8
[2025-10-12 18:04:19] Starting ATLAS job with PandaID=6840532011
[2025-10-12 18:04:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:17:56]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:17:56] 2025-10-13 01:17:14,613 | INFO     | -- intersect: -37546259403.353775
[2025-10-12 21:17:56] 2025-10-13 01:17:14,614 | INFO     | intersect: -37546259403.353775
[2025-10-12 21:17:56] 2025-10-13 01:17:14,614 | INFO     | chi2: 1.6609117619514524
[2025-10-12 21:17:56] 2025-10-13 01:17:14,615 | INFO     | sum of square deviations: 1931608310.0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,616 | INFO     | sum of deviations: 43470563742.50001
[2025-10-12 21:17:56] 2025-10-13 01:17:14,616 | INFO     | mean x: 1760312277.5
[2025-10-12 21:17:56] 2025-10-13 01:17:14,616 | INFO     | mean y: 2456539.6358695654
[2025-10-12 21:17:56] 2025-10-13 01:17:14,617 | INFO     | -- intersect: -39613114934.98111
[2025-10-12 21:17:56] 2025-10-13 01:17:14,617 | INFO     | intersect: -39613114934.98111
[2025-10-12 21:17:56] 2025-10-13 01:17:14,617 | INFO     | chi2: 1.660039459523682
[2025-10-12 21:17:56] 2025-10-13 01:17:14,618 | INFO     | current chi2=1.660039459523682 (change=0.05251949247113966 %)
[2025-10-12 21:17:56] 2025-10-13 01:17:14,618 | INFO     | right removable region: 183
[2025-10-12 21:17:56] 2025-10-13 01:17:14,618 | INFO     | sum of square deviations: 1931608310.0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,620 | INFO     | sum of deviations: 13641159068.500002
[2025-10-12 21:17:56] 2025-10-13 01:17:14,620 | INFO     | mean x: 1760312582.5
[2025-10-12 21:17:56] 2025-10-13 01:17:14,620 | INFO     | mean y: 2486589.570652174
[2025-10-12 21:17:56] 2025-10-13 01:17:14,620 | INFO     | -- intersect: -12428969531.139727
[2025-10-12 21:17:56] 2025-10-13 01:17:14,621 | INFO     | intersect: -12428969531.139727
[2025-10-12 21:17:56] 2025-10-13 01:17:14,621 | INFO     | chi2: 0.17299371039601844
[2025-10-12 21:17:56] 2025-10-13 01:17:14,621 | INFO     | current chi2=0.17299371039601844 (change=89.58441294962213 %)
[2025-10-12 21:17:56] 2025-10-13 01:17:14,622 | INFO     | sum of square deviations: 1778377530.0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,623 | INFO     | sum of deviations: 5211742766.000001
[2025-10-12 21:17:56] 2025-10-13 01:17:14,623 | INFO     | mean x: 1760312735.0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,624 | INFO     | mean y: 2494993.1117318436
[2025-10-12 21:17:56] 2025-10-13 01:17:14,624 | INFO     | -- intersect: -5156306784.221749
[2025-10-12 21:17:56] 2025-10-13 01:17:14,624 | INFO     | intersect: -5156306784.221749
[2025-10-12 21:17:56] 2025-10-13 01:17:14,624 | INFO     | chi2: 0.10550903476290628
[2025-10-12 21:17:56] 2025-10-13 01:17:14,625 | INFO     | current chi2=0.10550903476290628 (change=39.00990127249468 %)
[2025-10-12 21:17:56] 2025-10-13 01:17:14,625 | INFO     | sum of square deviations: 1633472487.5
[2025-10-12 21:17:56] 2025-10-13 01:17:14,626 | INFO     | sum of deviations: -3570948540.0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,627 | INFO     | mean x: 1760312887.5
[2025-10-12 21:17:56] 2025-10-13 01:17:14,627 | INFO     | mean y: 2504195.885057471
[2025-10-12 21:17:56] 2025-10-13 01:17:14,627 | INFO     | -- intersect: 3850739647.4547977
[2025-10-12 21:17:56] 2025-10-13 01:17:14,627 | INFO     | intersect: 3850739647.4547977
[2025-10-12 21:17:56] 2025-10-13 01:17:14,628 | INFO     | chi2: 0.006938456941857781
[2025-10-12 21:17:56] 2025-10-13 01:17:14,628 | INFO     | current chi2=0.006938456941857781 (change=93.42382672967345 %)
[2025-10-12 21:17:56] 2025-10-13 01:17:14,628 | INFO     | sum of square deviations: 1496660620.0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,630 | INFO     | sum of deviations: -4375795106.0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,630 | INFO     | mean x: 1760313040.0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,630 | INFO     | mean y: 2505087.094674556
[2025-10-12 21:17:56] 2025-10-13 01:17:14,630 | INFO     | -- intersect: 5149142262.234609
[2025-10-12 21:17:56] 2025-10-13 01:17:14,630 | INFO     | intersect: 5149142262.234609
[2025-10-12 21:17:56] 2025-10-13 01:17:14,631 | INFO     | chi2: 0.00526945412662495
[2025-10-12 21:17:56] 2025-10-13 01:17:14,631 | INFO     | current chi2=0.00526945412662495 (change=24.054380234951108 %)
[2025-10-12 21:17:56] 2025-10-13 01:17:14,631 | INFO     | left removable region: 40
[2025-10-12 21:17:56] 2025-10-13 01:17:14,632 | INFO     | sum of square deviations: 906703512.0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,633 | INFO     | sum of deviations: -3868526852.9999995
[2025-10-12 21:17:56] 2025-10-13 01:17:14,633 | INFO     | mean x: 1760313467.0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,633 | INFO     | mean y: 2504825.20979021
[2025-10-12 21:17:56] 2025-10-13 01:17:14,633 | INFO     | -- intersect: 7513030401.278175
[2025-10-12 21:17:56] 2025-10-13 01:17:14,633 | INFO     | intersect: 7513030401.278175
[2025-10-12 21:17:56] 2025-10-13 01:17:14,634 | INFO     | chi2: 0.004448051330387291
[2025-10-12 21:17:56] 2025-10-13 01:17:14,634 | INFO     | -- intersect: 7513030401.278175
[2025-10-12 21:17:56] 2025-10-13 01:17:14,634 | INFO     | current memory leak: -4.27 B/s (using 143 data points, chi2=0.00)
[2025-10-12 21:17:56] 2025-10-13 01:17:14,635 | INFO     | could have reported an average CPU frequency of 2574 MHz (10 samples)
[2025-10-12 21:17:56] 2025-10-13 01:17:14,635 | INFO     | ..............................
[2025-10-12 21:17:56] 2025-10-13 01:17:14,635 | INFO     | . Timing measurements:
[2025-10-12 21:17:56] 2025-10-13 01:17:14,635 | INFO     | . get job = 0 s
[2025-10-12 21:17:56] 2025-10-13 01:17:14,636 | INFO     | . initial setup = 2 s
[2025-10-12 21:17:56] 2025-10-13 01:17:14,636 | INFO     | . payload setup = 4 s
[2025-10-12 21:17:56] 2025-10-13 01:17:14,636 | INFO     | . stage-in = 0 s
[2025-10-12 21:17:56] 2025-10-13 01:17:14,636 | INFO     | . payload execution = 11533 s
[2025-10-12 21:17:56] 2025-10-13 01:17:14,636 | INFO     | . stage-out = 2 s
[2025-10-12 21:17:56] 2025-10-13 01:17:14,636 | INFO     | . log creation = 0 s
[2025-10-12 21:17:56] 2025-10-13 01:17:14,637 | INFO     | ..............................
[2025-10-12 21:17:56] 2025-10-13 01:17:14,806 | INFO     | 
[2025-10-12 21:17:56] 2025-10-13 01:17:14,807 | INFO     | job summary report
[2025-10-12 21:17:56] 2025-10-13 01:17:14,807 | INFO     | --------------------------------------------------
[2025-10-12 21:17:56] 2025-10-13 01:17:14,807 | INFO     | PanDA job id: 6840532011
[2025-10-12 21:17:56] 2025-10-13 01:17:14,807 | INFO     | task id: 46676269
[2025-10-12 21:17:56] 2025-10-13 01:17:14,807 | INFO     | errors: (none)
[2025-10-12 21:17:56] 2025-10-13 01:17:14,807 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:17:56] 2025-10-13 01:17:14,808 | INFO     | pilot state: finished 
[2025-10-12 21:17:56] 2025-10-13 01:17:14,808 | INFO     | transexitcode: 0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,808 | INFO     | exeerrorcode: 0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,808 | INFO     | exeerrordiag: 
[2025-10-12 21:17:56] 2025-10-13 01:17:14,808 | INFO     | exitcode: 0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,809 | INFO     | exitmsg: OK
[2025-10-12 21:17:56] 2025-10-13 01:17:14,809 | INFO     | cpuconsumptiontime: 83750 s
[2025-10-12 21:17:56] 2025-10-13 01:17:14,809 | INFO     | nevents: 400
[2025-10-12 21:17:56] 2025-10-13 01:17:14,809 | INFO     | neventsw: 0
[2025-10-12 21:17:56] 2025-10-13 01:17:14,809 | INFO     | pid: 16006
[2025-10-12 21:17:56] 2025-10-13 01:17:14,809 | INFO     | pgrp: 16006
[2025-10-12 21:17:56] 2025-10-13 01:17:14,810 | INFO     | corecount: 8
[2025-10-12 21:17:56] 2025-10-13 01:17:14,810 | INFO     | event service: False
[2025-10-12 21:17:56] 2025-10-13 01:17:14,810 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 12: 2349175, 11542: 2378445, 11545: 2387655, 11549: 2387793}
[2025-10-12 21:17:56] 2025-10-13 01:17:14,810 | INFO     | --------------------------------------------------
[2025-10-12 21:17:56] 2025-10-13 01:17:14,810 | INFO     | 
[2025-10-12 21:17:56] 2025-10-13 01:17:14,811 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 21:17:56] 2025-10-13 01:17:14,830 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,831 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,831 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,831 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,831 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,831 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,831 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,831 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,831 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,831 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,832 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,832 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,832 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,832 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,832 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,832 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,832 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,832 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:17:56] 2025-10-13 01:17:14,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,833 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:17:56] 2025-10-13 01:17:14,833 | INFO     | job 6840532011 has completed (purged errors)
[2025-10-12 21:17:56] 2025-10-13 01:17:14,833 | INFO     | overall cleanup function is called
[2025-10-12 21:17:56] 2025-10-13 01:17:15,840 | INFO     | --- collectZombieJob: --- 10, [16006]
[2025-10-12 21:17:56] 2025-10-13 01:17:15,852 | INFO     | zombie collector waiting for pid 16006
[2025-10-12 21:17:56] 2025-10-13 01:17:15,852 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:17:56] 2025-10-13 01:17:15,852 | INFO     | collected zombie processes
[2025-10-12 21:17:56] 2025-10-13 01:17:15,852 | INFO     | will attempt to kill all subprocesses of pid=16006
[2025-10-12 21:17:56] 2025-10-13 01:17:15,977 | INFO     | process IDs to be killed: [16006] (in reverse order)
[2025-10-12 21:17:56] 2025-10-13 01:17:16,021 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:17:56] 2025-10-13 01:17:16,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:17:56] 2025-10-13 01:17:16,024 | INFO     | did not find any defunct processes belonging to 16006
[2025-10-12 21:17:56] 2025-10-13 01:17:16,026 | INFO     | did not find any defunct processes belonging to 16006
[2025-10-12 21:17:56] 2025-10-13 01:17:16,026 | INFO     | ready for new job
[2025-10-12 21:17:56] 2025-10-13 01:17:16,026 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:17:56] 2025-10-13 01:17:16,028 | INFO     | ***************************************
[2025-10-12 21:17:56] 2025-10-13 01:17:16,028 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:17:56] 2025-10-13 01:17:16,028 | INFO     | ***************************************
[2025-10-12 21:17:56] 2025-10-13 01:17:16,028 | INFO     | 
[2025-10-12 21:17:56] 2025-10-13 01:17:16,029 | INFO     | architecture information:
[2025-10-12 21:17:56] 2025-10-13 01:17:16,029 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:17:56] 2025-10-13 01:17:16,038 | INFO     | cat /etc/os-release:
[2025-10-12 21:17:56] NAME="CentOS Linux"
[2025-10-12 21:17:56] VERSION="7 (Core)"
[2025-10-12 21:17:56] ID="centos"
[2025-10-12 21:17:56] ID_LIKE="rhel fedora"
[2025-10-12 21:17:56] VERSION_ID="7"
[2025-10-12 21:17:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:17:56] ANSI_COLOR="0;31"
[2025-10-12 21:17:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:17:56] HOME_URL="https://www.centos.org/"
[2025-10-12 21:17:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:17:56] 
[2025-10-12 21:17:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:17:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:17:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:17:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:17:56] 
[2025-10-12 21:17:56] 2025-10-13 01:17:16,039 | INFO     | ***************************************
[2025-10-12 21:17:56] 2025-10-13 01:17:16,542 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 21:17:56] 2025-10-13 01:17:16,562 | INFO     | sufficient remaining disk space (28179431424 B)
[2025-10-12 21:17:56] 2025-10-13 01:17:16,562 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:17:56] 2025-10-13 01:17:16,562 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:17:56] 2025-10-13 01:17:16,562 | INFO     | update_server=False
[2025-10-12 21:17:56] 2025-10-13 01:17:16,563 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:17:56] 2025-10-13 01:17:16,563 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:17:56] 2025-10-13 01:17:16,563 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:17:56] 2025-10-13 01:17:16,594 | INFO     | all data control threads have been joined
[2025-10-12 21:17:56] 2025-10-13 01:17:16,652 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:17:56] 2025-10-13 01:17:16,652 | INFO     | aborting loop
[2025-10-12 21:17:56] 2025-10-13 01:17:17,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:17:56] 2025-10-13 01:17:17,221 | INFO     | all job control threads have been joined
[2025-10-12 21:17:56] 2025-10-13 01:17:17,564 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:17,568 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:17,600 | INFO     | [data] control thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:17,647 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:17,657 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:17,723 | INFO     | all payload control threads have been joined
[2025-10-12 21:17:56] 2025-10-13 01:17:17,727 | INFO     | [job] validate thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:18,228 | INFO     | [job] control thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:18,317 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:18,327 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:18,355 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:18,356 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:18,406 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:18,569 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:18,728 | INFO     | [payload] control thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:19,070 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:21,169 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:17:56] 2025-10-13 01:17:47,541 | INFO     | PID=9591 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 21:17:56] 2025-10-13 01:17:47,542 | INFO     | .. there are 3 such processes running
[2025-10-12 21:17:56] 2025-10-13 01:17:47,543 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:17:56] 2025-10-13 01:17:47,543 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:17:56] 2025-10-13 01:17:47,543 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:17:56] 2025-10-13 01:17:48,827 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:17:56] 2025-10-13 01:17:50,781 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140201359812416)>', '<ExcThread(monitor, started 140200927807232)>']
[2025-10-12 21:17:56] 2025-10-13 01:17:51,562 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:17:56] 2025-10-13 01:17:51,563 | INFO     | [monitor] control thread has ended
[2025-10-12 21:17:56] 2025-10-13 01:17:55,808 | INFO     | all workflow threads have been joined
[2025-10-12 21:17:56] 2025-10-13 01:17:55,808 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:17:56] 2025-10-13 01:17:55,808 | INFO     | traces error code: 0
[2025-10-12 21:17:56] 2025-10-13 01:17:55,809 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:17:56] 2025-10-13 01:17:55,917 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:17:56] 2025-10-13 01:17:55,919 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:17:56] 2025-10-13 01:17:55,921 [wrapper] pilotpid: 9591
[2025-10-12 21:17:56] 2025-10-13 01:17:55,924 [wrapper] Pilot exit status: 0
[2025-10-12 21:17:56] 2025-10-13 01:17:55,933 [wrapper] pandaids: 6840532011
[2025-10-12 21:17:56] 2025-10-13 01:17:55,967 [wrapper] cleanup supervisor_pilot 18277 9592
[2025-10-12 21:17:56] 2025-10-13 01:17:55,969 [wrapper] Test setup, not cleaning
[2025-10-12 21:17:56] 2025-10-13 01:17:55,971 [wrapper] apfmon messages muted
[2025-10-12 21:17:56] 2025-10-13 01:17:55,973 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:17:56] 2025-10-13 01:17:55,975 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:17:56]  *** Error codes and diagnostics ***
[2025-10-12 21:17:56]     "exeErrorCode": 0,
[2025-10-12 21:17:56]     "exeErrorDiag": "",
[2025-10-12 21:17:56]     "pilotErrorCode": 0,
[2025-10-12 21:17:56]     "pilotErrorDiag": "",
[2025-10-12 21:17:56]  *** Listing of results directory ***
[2025-10-12 21:17:56] total 414236
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 14:20 pilot3.tar.gz
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 14:22 queuedata.json
[2025-10-12 21:17:56] -rwx------ 1 boincer umatlas     36292 Oct 12 14:22 runpilot2-wrapper.sh
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas       100 Oct 12 18:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:17:56] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 18:04 run_atlas
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas       105 Oct 12 18:04 job.xml
[2025-10-12 21:17:56] -rw-r--r-- 2 boincer umatlas 219576524 Oct 12 18:04 EVNT.46676267._004401.pool.root.1
[2025-10-12 21:17:56] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 18:04 start_atlas.sh
[2025-10-12 21:17:56] drwxrwx--x 2 boincer umatlas      4096 Oct 12 18:04 shared
[2025-10-12 21:17:56] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 18:04 input.tar.gz
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas         0 Oct 12 18:04 boinc_lockfile
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 18:04 pandaJob.out
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas    975528 Oct 12 18:04 agis_schedconf.cvmfs.json
[2025-10-12 21:17:56] drwx------ 5 boincer umatlas      4096 Oct 12 18:04 pilot3
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 21:12 init_data.xml
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas 196581623 Oct 12 21:16 HITS.46676269._086032.pool.root.1
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas       530 Oct 12 21:16 boinc_task_state.xml
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas      1054 Oct 12 21:17 memory_monitor_summary.json
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas   1560580 Oct 12 21:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas    429654 Oct 12 21:17 log.46676269._086032.job.log.tgz.1
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas      7862 Oct 12 21:17 heartbeat.json
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 21:17 boinc_mmap_file
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas        28 Oct 12 21:17 wrapper_checkpoint.txt
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas        95 Oct 12 21:17 pilot_heartbeat.json
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas      4820 Oct 12 21:17 pilotlog.txt
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas   1628008 Oct 12 21:17 log.46676269._086032.job.log.1
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas       357 Oct 12 21:17 output.list
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas       620 Oct 12 21:17 runtime_log
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas   2078720 Oct 12 21:17 result.tar.gz
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 21:17 runtime_log.err
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas       662 Oct 12 21:17 eqOLDmStFS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmO2kNDm7VP5Ro.diag
[2025-10-12 21:17:56] -rw-r--r-- 1 boincer umatlas     20863 Oct 12 21:17 stderr.txt
[2025-10-12 21:17:56] HITS file was successfully produced:
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas 196581623 Oct 12 21:16 shared/HITS.pool.root.1
[2025-10-12 21:17:56]  *** Contents of shared directory: ***
[2025-10-12 21:17:56] total 409020
[2025-10-12 21:17:56] -rw-r--r-- 2 boincer umatlas 219576524 Oct 12 18:04 ATLAS.root_0
[2025-10-12 21:17:56] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 18:04 start_atlas.sh
[2025-10-12 21:17:56] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 18:04 input.tar.gz
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas 196581623 Oct 12 21:16 HITS.pool.root.1
[2025-10-12 21:17:56] -rw------- 1 boincer umatlas   2078720 Oct 12 21:17 result.tar.gz
21:17:57 (5912): run_atlas exited; CPU time 83901.537736
21:17:57 (5912): called boinc_finish(0)

</stderr_txt>
]]>

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