Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:07:55 (37504): wrapper (7.7.26015): starting
18:07:55 (37504): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 18:07:55] Arguments: --nthreads 8
[2025-10-12 18:07:55] Threads: 8
[2025-10-12 18:07:55] Checking for CVMFS
[2025-10-12 18:07:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:07:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:07:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:07:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:07:56] 2.11.2.0 13817 481138 275180 151639 2 57 9901351 18432000 2749 130560 8 209995845 99.520 263803094 24851 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-10-12 18:07:56] CVMFS is ok
[2025-10-12 18:07:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:07:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:07:56] Further information can be found at the LHC@home message board.
[2025-10-12 18:07:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:07:56] Checking for apptainer binary...
[2025-10-12 18:07:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:07:56] Running /usr/bin/apptainer --version
[2025-10-12 18:07:56] apptainer version 1.3.2-1.el7
[2025-10-12 18:07:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:07:56] c-9-29.aglt2.org
[2025-10-12 18:07:56] apptainer works
[2025-10-12 18:07:56] Set ATHENA_PROC_NUMBER=8
[2025-10-12 18:07:56] Set ATHENA_CORE_NUMBER=8
[2025-10-12 18:07:56] Starting ATLAS job with PandaID=6840223829
[2025-10-12 18:07:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:54:29]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:54:29] 2025-10-13 00:53:30,282 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 20:54:29] 2025-10-13 00:53:30,282 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 20:54:29] 2025-10-13 00:53:30,287 | INFO     | fitting pss+swap vs Time
[2025-10-12 20:54:29] 2025-10-13 00:53:30,287 | INFO     | sum of square deviations: 1342841922.0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,288 | INFO     | sum of deviations: 13068014139.999992
[2025-10-12 20:54:29] 2025-10-13 00:53:30,288 | INFO     | mean x: 1760311854.0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,288 | INFO     | mean y: 2438942.7975460123
[2025-10-12 20:54:29] 2025-10-13 00:53:30,288 | INFO     | -- intersect: -17128229844.054344
[2025-10-12 20:54:29] 2025-10-13 00:53:30,288 | INFO     | intersect: -17128229844.054344
[2025-10-12 20:54:29] 2025-10-13 00:53:30,289 | INFO     | chi2: 2.0712299812672557
[2025-10-12 20:54:29] 2025-10-13 00:53:30,289 | INFO     | sum of square deviations: 1223016419.5
[2025-10-12 20:54:29] 2025-10-13 00:53:30,290 | INFO     | sum of deviations: 23415505445.0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,290 | INFO     | mean x: 1760311701.5
[2025-10-12 20:54:29] 2025-10-13 00:53:30,290 | INFO     | mean y: 2451765.2784810127
[2025-10-12 20:54:29] 2025-10-13 00:53:30,290 | INFO     | -- intersect: -33699947952.479736
[2025-10-12 20:54:29] 2025-10-13 00:53:30,290 | INFO     | intersect: -33699947952.479736
[2025-10-12 20:54:29] 2025-10-13 00:53:30,290 | INFO     | chi2: 1.2511702365936903
[2025-10-12 20:54:29] 2025-10-13 00:53:30,290 | INFO     | current chi2=1.2511702365936903 (change=39.59288693628422 %)
[2025-10-12 20:54:29] 2025-10-13 00:53:30,290 | INFO     | sum of square deviations: 1110539892.0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,291 | INFO     | sum of deviations: 22606460676.0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,291 | INFO     | mean x: 1760311549.0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,291 | INFO     | mean y: 2450667.9803921566
[2025-10-12 20:54:29] 2025-10-13 00:53:30,291 | INFO     | -- intersect: -35830943608.663155
[2025-10-12 20:54:29] 2025-10-13 00:53:30,291 | INFO     | intersect: -35830943608.663155
[2025-10-12 20:54:29] 2025-10-13 00:53:30,292 | INFO     | chi2: 1.2518309896812185
[2025-10-12 20:54:29] 2025-10-13 00:53:30,292 | INFO     | current chi2=1.2518309896812185 (change=-0.05281080609199276 %)
[2025-10-12 20:54:29] 2025-10-13 00:53:30,292 | INFO     | right removable region: 152
[2025-10-12 20:54:29] 2025-10-13 00:53:30,292 | INFO     | sum of square deviations: 1223016419.5
[2025-10-12 20:54:29] 2025-10-13 00:53:30,293 | INFO     | sum of deviations: -7318746328.0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,293 | INFO     | mean x: 1760312006.5
[2025-10-12 20:54:29] 2025-10-13 00:53:30,293 | INFO     | mean y: 2464457.139240506
[2025-10-12 20:54:29] 2025-10-13 00:53:30,293 | INFO     | -- intersect: 10536482503.252796
[2025-10-12 20:54:29] 2025-10-13 00:53:30,293 | INFO     | intersect: 10536482503.252796
[2025-10-12 20:54:29] 2025-10-13 00:53:30,293 | INFO     | chi2: 0.8525658264785894
[2025-10-12 20:54:29] 2025-10-13 00:53:30,293 | INFO     | current chi2=0.8525658264785894 (change=58.8377034810515 %)
[2025-10-12 20:54:29] 2025-10-13 00:53:30,294 | INFO     | sum of square deviations: 1110539892.0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,294 | INFO     | sum of deviations: -7370591448.0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,294 | INFO     | mean x: 1760312159.0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,294 | INFO     | mean y: 2464566.8169934643
[2025-10-12 20:54:29] 2025-10-13 00:53:30,294 | INFO     | -- intersect: 11685558383.077505
[2025-10-12 20:54:29] 2025-10-13 00:53:30,295 | INFO     | intersect: 11685558383.077505
[2025-10-12 20:54:29] 2025-10-13 00:53:30,295 | INFO     | chi2: 0.8442740829758262
[2025-10-12 20:54:29] 2025-10-13 00:53:30,295 | INFO     | current chi2=0.8442740829758262 (change=0.9725634367742764 %)
[2025-10-12 20:54:29] 2025-10-13 00:53:30,295 | INFO     | left removable region: 20
[2025-10-12 20:54:29] 2025-10-13 00:53:30,295 | INFO     | sum of square deviations: 713140813.0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,296 | INFO     | sum of deviations: 1596364662.4999995
[2025-10-12 20:54:29] 2025-10-13 00:53:30,296 | INFO     | mean x: 1760312128.5
[2025-10-12 20:54:29] 2025-10-13 00:53:30,296 | INFO     | mean y: 2480916.2954545454
[2025-10-12 20:54:29] 2025-10-13 00:53:30,296 | INFO     | -- intersect: -3937975197.9552355
[2025-10-12 20:54:29] 2025-10-13 00:53:30,296 | INFO     | intersect: -3937975197.9552355
[2025-10-12 20:54:29] 2025-10-13 00:53:30,296 | INFO     | chi2: 0.00023401101960793282
[2025-10-12 20:54:29] 2025-10-13 00:53:30,296 | INFO     | -- intersect: -3937975197.9552355
[2025-10-12 20:54:29] 2025-10-13 00:53:30,296 | INFO     | current memory leak: 2.24 B/s (using 132 data points, chi2=0.00)
[2025-10-12 20:54:29] 2025-10-13 00:53:30,297 | INFO     | could have reported an average CPU frequency of 2999 MHz (9 samples)
[2025-10-12 20:54:29] 2025-10-13 00:53:30,297 | INFO     | ..............................
[2025-10-12 20:54:29] 2025-10-13 00:53:30,297 | INFO     | . Timing measurements:
[2025-10-12 20:54:29] 2025-10-13 00:53:30,297 | INFO     | . get job = 0 s
[2025-10-12 20:54:29] 2025-10-13 00:53:30,297 | INFO     | . initial setup = 2 s
[2025-10-12 20:54:29] 2025-10-13 00:53:30,297 | INFO     | . payload setup = 4 s
[2025-10-12 20:54:29] 2025-10-13 00:53:30,297 | INFO     | . stage-in = 0 s
[2025-10-12 20:54:29] 2025-10-13 00:53:30,297 | INFO     | . payload execution = 9890 s
[2025-10-12 20:54:29] 2025-10-13 00:53:30,297 | INFO     | . stage-out = 1 s
[2025-10-12 20:54:29] 2025-10-13 00:53:30,297 | INFO     | . log creation = 0 s
[2025-10-12 20:54:29] 2025-10-13 00:53:30,298 | INFO     | ..............................
[2025-10-12 20:54:29] 2025-10-13 00:53:30,445 | INFO     | 
[2025-10-12 20:54:29] 2025-10-13 00:53:30,445 | INFO     | job summary report
[2025-10-12 20:54:29] 2025-10-13 00:53:30,446 | INFO     | --------------------------------------------------
[2025-10-12 20:54:29] 2025-10-13 00:53:30,446 | INFO     | PanDA job id: 6840223829
[2025-10-12 20:54:29] 2025-10-13 00:53:30,446 | INFO     | task id: 46676269
[2025-10-12 20:54:29] 2025-10-13 00:53:30,446 | INFO     | errors: (none)
[2025-10-12 20:54:29] 2025-10-13 00:53:30,446 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:54:29] 2025-10-13 00:53:30,446 | INFO     | pilot state: finished 
[2025-10-12 20:54:29] 2025-10-13 00:53:30,447 | INFO     | transexitcode: 0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,447 | INFO     | exeerrorcode: 0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,447 | INFO     | exeerrordiag: 
[2025-10-12 20:54:29] 2025-10-13 00:53:30,447 | INFO     | exitcode: 0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,447 | INFO     | exitmsg: OK
[2025-10-12 20:54:29] 2025-10-13 00:53:30,447 | INFO     | cpuconsumptiontime: 74927 s
[2025-10-12 20:54:29] 2025-10-13 00:53:30,447 | INFO     | nevents: 400
[2025-10-12 20:54:29] 2025-10-13 00:53:30,448 | INFO     | neventsw: 0
[2025-10-12 20:54:29] 2025-10-13 00:53:30,448 | INFO     | pid: 48242
[2025-10-12 20:54:29] 2025-10-13 00:53:30,448 | INFO     | pgrp: 48242
[2025-10-12 20:54:29] 2025-10-13 00:53:30,448 | INFO     | corecount: 8
[2025-10-12 20:54:29] 2025-10-13 00:53:30,448 | INFO     | event service: False
[2025-10-12 20:54:29] 2025-10-13 00:53:30,448 | INFO     | sizes: {0: 2348029, 1: 2348885, 5: 2349147, 12: 2349203, 9899: 2377767, 9902: 2386949, 9908: 2387151}
[2025-10-12 20:54:29] 2025-10-13 00:53:30,449 | INFO     | --------------------------------------------------
[2025-10-12 20:54:29] 2025-10-13 00:53:30,449 | INFO     | 
[2025-10-12 20:54:29] 2025-10-13 00:53:30,449 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 20:54:29] 2025-10-13 00:53:30,476 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,477 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,477 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,477 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,477 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,478 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,478 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,478 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,478 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,478 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,478 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,479 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,479 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,479 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,479 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,479 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,479 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,480 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:54:29] 2025-10-13 00:53:30,480 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,480 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:54:29] 2025-10-13 00:53:30,480 | INFO     | job 6840223829 has completed (purged errors)
[2025-10-12 20:54:29] 2025-10-13 00:53:30,480 | INFO     | overall cleanup function is called
[2025-10-12 20:54:29] 2025-10-13 00:53:31,487 | INFO     | --- collectZombieJob: --- 10, [48242]
[2025-10-12 20:54:29] 2025-10-13 00:53:31,487 | INFO     | zombie collector waiting for pid 48242
[2025-10-12 20:54:29] 2025-10-13 00:53:31,488 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:54:29] 2025-10-13 00:53:31,488 | INFO     | collected zombie processes
[2025-10-12 20:54:29] 2025-10-13 00:53:31,488 | INFO     | will attempt to kill all subprocesses of pid=48242
[2025-10-12 20:54:29] 2025-10-13 00:53:31,724 | INFO     | process IDs to be killed: [48242] (in reverse order)
[2025-10-12 20:54:29] 2025-10-13 00:53:31,799 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:54:29] 2025-10-13 00:53:31,800 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:54:29] 2025-10-13 00:53:31,808 | INFO     | did not find any defunct processes belonging to 48242
[2025-10-12 20:54:29] 2025-10-13 00:53:31,815 | INFO     | did not find any defunct processes belonging to 48242
[2025-10-12 20:54:29] 2025-10-13 00:53:31,815 | INFO     | ready for new job
[2025-10-12 20:54:29] 2025-10-13 00:53:31,815 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:54:29] 2025-10-13 00:53:31,817 | INFO     | ***************************************
[2025-10-12 20:54:29] 2025-10-13 00:53:31,817 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:54:29] 2025-10-13 00:53:31,817 | INFO     | ***************************************
[2025-10-12 20:54:29] 2025-10-13 00:53:31,818 | INFO     | 
[2025-10-12 20:54:29] 2025-10-13 00:53:31,819 | INFO     | architecture information:
[2025-10-12 20:54:29] 2025-10-13 00:53:31,820 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:54:29] 2025-10-13 00:53:31,832 | INFO     | cat /etc/os-release:
[2025-10-12 20:54:29] NAME="CentOS Linux"
[2025-10-12 20:54:29] VERSION="7 (Core)"
[2025-10-12 20:54:29] ID="centos"
[2025-10-12 20:54:29] ID_LIKE="rhel fedora"
[2025-10-12 20:54:29] VERSION_ID="7"
[2025-10-12 20:54:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:54:29] ANSI_COLOR="0;31"
[2025-10-12 20:54:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:54:29] HOME_URL="https://www.centos.org/"
[2025-10-12 20:54:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:54:29] 
[2025-10-12 20:54:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:54:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:54:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:54:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:54:29] 
[2025-10-12 20:54:29] 2025-10-13 00:53:31,832 | INFO     | ***************************************
[2025-10-12 20:54:29] 2025-10-13 00:53:32,336 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 20:54:29] 2025-10-13 00:53:32,372 | INFO     | sufficient remaining disk space (105062072320 B)
[2025-10-12 20:54:29] 2025-10-13 00:53:32,372 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:54:29] 2025-10-13 00:53:32,372 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:54:29] 2025-10-13 00:53:32,372 | INFO     | update_server=False
[2025-10-12 20:54:29] 2025-10-13 00:53:32,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:54:29] 2025-10-13 00:53:32,372 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:54:29] 2025-10-13 00:53:32,373 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:54:29] 2025-10-13 00:53:32,373 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:54:29] 2025-10-13 00:53:32,373 | INFO     | aborting loop
[2025-10-12 20:54:29] 2025-10-13 00:53:32,444 | INFO     | all job control threads have been joined
[2025-10-12 20:54:29] 2025-10-13 00:53:33,255 | INFO     | all payload control threads have been joined
[2025-10-12 20:54:29] 2025-10-13 00:53:33,271 | INFO     | all data control threads have been joined
[2025-10-12 20:54:29] 2025-10-13 00:53:33,379 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:33,379 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:33,380 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:33,405 | INFO     | [job] validate thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:33,437 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:33,449 | INFO     | [job] control thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:33,653 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:34,008 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:34,261 | INFO     | [payload] control thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:34,277 | INFO     | [data] control thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:34,379 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:34,539 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:34,589 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:34,612 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:54:29] 2025-10-13 00:53:34,703 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:38,620 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:53:42,659 | INFO     | job.realtimelogging is not enabled
[2025-10-12 20:54:29] 2025-10-13 00:53:43,665 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:54:29] 2025-10-13 00:54:03,570 | INFO     | PID=41245 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 20:54:29] 2025-10-13 00:54:03,571 | INFO     | .. there are 4 such processes running
[2025-10-12 20:54:29] 2025-10-13 00:54:03,571 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:54:29] 2025-10-13 00:54:03,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:54:29] 2025-10-13 00:54:03,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:54:29] 2025-10-13 00:54:22,946 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:54:29] 2025-10-13 00:54:24,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140325416064832)>', '<ExcThread(monitor, started 140324768839424)>']
[2025-10-12 20:54:29] 2025-10-13 00:54:24,687 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:54:29] 2025-10-13 00:54:24,687 | INFO     | [monitor] control thread has ended
[2025-10-12 20:54:29] 2025-10-13 00:54:29,030 | INFO     | all workflow threads have been joined
[2025-10-12 20:54:29] 2025-10-13 00:54:29,031 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:54:29] 2025-10-13 00:54:29,031 | INFO     | traces error code: 0
[2025-10-12 20:54:29] 2025-10-13 00:54:29,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:54:29] 2025-10-13 00:54:29,110 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:54:29] 2025-10-13 00:54:29,112 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:54:29] 2025-10-13 00:54:29,115 [wrapper] pilotpid: 41245
[2025-10-12 20:54:29] 2025-10-13 00:54:29,117 [wrapper] Pilot exit status: 0
[2025-10-12 20:54:29] 2025-10-13 00:54:29,124 [wrapper] pandaids: 6840223829
[2025-10-12 20:54:29] 2025-10-13 00:54:29,158 [wrapper] cleanup supervisor_pilot  2407 41246
[2025-10-12 20:54:29] 2025-10-13 00:54:29,161 [wrapper] Test setup, not cleaning
[2025-10-12 20:54:29] 2025-10-13 00:54:29,165 [wrapper] apfmon messages muted
[2025-10-12 20:54:29] 2025-10-13 00:54:29,167 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:54:29] 2025-10-13 00:54:29,170 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:54:29]  *** Error codes and diagnostics ***
[2025-10-12 20:54:29]     "exeErrorCode": 0,
[2025-10-12 20:54:29]     "exeErrorDiag": "",
[2025-10-12 20:54:29]     "pilotErrorCode": 0,
[2025-10-12 20:54:29]     "pilotErrorDiag": "",
[2025-10-12 20:54:29]  *** Listing of results directory ***
[2025-10-12 20:54:29] total 413032
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 11:12 queuedata.json
[2025-10-12 20:54:29] -rwx------ 1 boincer umatlas     36292 Oct 12 11:12 runpilot2-wrapper.sh
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas       100 Oct 12 18:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:54:29] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 18:07 run_atlas
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas       105 Oct 12 18:07 job.xml
[2025-10-12 20:54:29] -rw-r--r-- 2 boincer umatlas 222118867 Oct 12 18:07 EVNT.46676267._004559.pool.root.1
[2025-10-12 20:54:29] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 18:07 start_atlas.sh
[2025-10-12 20:54:29] drwxrwx--x 2 boincer umatlas      4096 Oct 12 18:07 shared
[2025-10-12 20:54:29] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 18:07 input.tar.gz
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas         0 Oct 12 18:07 boinc_lockfile
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 18:07 pandaJob.out
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas    975528 Oct 12 18:08 agis_schedconf.cvmfs.json
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas   1560580 Oct 12 18:08 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:54:29] drwx------ 5 boincer umatlas      4096 Oct 12 18:08 pilot3
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas      6035 Oct 12 20:48 init_data.xml
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas 193311656 Oct 12 20:52 HITS.46676269._081933.pool.root.1
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas       530 Oct 12 20:52 boinc_task_state.xml
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas        95 Oct 12 20:53 pilot_heartbeat.json
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas      1045 Oct 12 20:53 memory_monitor_summary.json
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas    415386 Oct 12 20:53 log.46676269._081933.job.log.tgz.1
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas      7830 Oct 12 20:53 heartbeat.json
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 20:54 boinc_mmap_file
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas        28 Oct 12 20:54 wrapper_checkpoint.txt
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas      4894 Oct 12 20:54 pilotlog.txt
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas   1391098 Oct 12 20:54 log.46676269._081933.job.log.1
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas       357 Oct 12 20:54 output.list
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas       620 Oct 12 20:54 runtime_log
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas   1822720 Oct 12 20:54 result.tar.gz
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas      8693 Oct 12 20:54 runtime_log.err
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas       657 Oct 12 20:54 g3oLDmUvCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1PkNDmZeFESn.diag
[2025-10-12 20:54:29] -rw-r--r-- 1 boincer umatlas     20858 Oct 12 20:54 stderr.txt
[2025-10-12 20:54:29] HITS file was successfully produced:
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas 193311656 Oct 12 20:52 shared/HITS.pool.root.1
[2025-10-12 20:54:29]  *** Contents of shared directory: ***
[2025-10-12 20:54:29] total 408060
[2025-10-12 20:54:29] -rw-r--r-- 2 boincer umatlas 222118867 Oct 12 18:07 ATLAS.root_0
[2025-10-12 20:54:29] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 18:07 start_atlas.sh
[2025-10-12 20:54:29] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 18:07 input.tar.gz
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas 193311656 Oct 12 20:52 HITS.pool.root.1
[2025-10-12 20:54:29] -rw------- 1 boincer umatlas   1822720 Oct 12 20:54 result.tar.gz
20:54:30 (37504): run_atlas exited; CPU time 75146.422118
20:54:30 (37504): called boinc_finish(0)

</stderr_txt>
]]>

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