Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:57:22 (621634): wrapper (7.7.26015): starting
10:57:22 (621634): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 10:57:22] Arguments: --nthreads 4
[2025-10-13 10:57:22] Threads: 4
[2025-10-13 10:57:22] Checking for CVMFS
[2025-10-13 10:57:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:57:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:57:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:57:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:57:22] 2.9.2.0 4261 1719 87564 151654 2 57 33077249 36864000 0 130560 0 1571236 99.993 58522 617 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 10:57:22] CVMFS is ok
[2025-10-13 10:57:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:57:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 10:57:22] Further information can be found at the LHC@home message board.
[2025-10-13 10:57:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:57:22] Checking for apptainer binary...
[2025-10-13 10:57:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:57:22] Running /usr/bin/apptainer --version
[2025-10-13 10:57:22] apptainer version 1.4.1-1.1
[2025-10-13 10:57:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:57:23] atlasA237
[2025-10-13 10:57:23] apptainer works
[2025-10-13 10:57:23] Set ATHENA_PROC_NUMBER=4
[2025-10-13 10:57:23] Set ATHENA_CORE_NUMBER=4
[2025-10-13 10:57:23] Starting ATLAS job with PandaID=6840531993
[2025-10-13 10:57:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:12:43]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:12:43] 2025-10-13 10:12:24,193 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,193 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,193 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,193 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,193 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | job 6840531993 has completed (purged errors)
[2025-10-13 12:12:43] 2025-10-13 10:12:24,194 | INFO     | overall cleanup function is called
[2025-10-13 12:12:43] 2025-10-13 10:12:25,201 | INFO     | --- collectZombieJob: --- 10, [632026]
[2025-10-13 12:12:43] 2025-10-13 10:12:25,201 | INFO     | zombie collector waiting for pid 632026
[2025-10-13 12:12:43] 2025-10-13 10:12:25,201 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:12:43] 2025-10-13 10:12:25,201 | INFO     | collected zombie processes
[2025-10-13 12:12:43] 2025-10-13 10:12:25,201 | INFO     | will attempt to kill all subprocesses of pid=632026
[2025-10-13 12:12:43] 2025-10-13 10:12:25,268 | INFO     | process IDs to be killed: [632026] (in reverse order)
[2025-10-13 12:12:43] 2025-10-13 10:12:25,308 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:12:43] 2025-10-13 10:12:25,308 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:12:43] 2025-10-13 10:12:25,311 | INFO     | did not find any defunct processes belonging to 632026
[2025-10-13 12:12:43] 2025-10-13 10:12:25,313 | INFO     | did not find any defunct processes belonging to 632026
[2025-10-13 12:12:43] 2025-10-13 10:12:25,313 | INFO     | ready for new job
[2025-10-13 12:12:43] 2025-10-13 10:12:25,313 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:12:43] 2025-10-13 10:12:25,314 | INFO     | ***************************************
[2025-10-13 12:12:43] 2025-10-13 10:12:25,314 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:12:43] 2025-10-13 10:12:25,314 | INFO     | ***************************************
[2025-10-13 12:12:43] 2025-10-13 10:12:25,314 | INFO     | 
[2025-10-13 12:12:43] 2025-10-13 10:12:25,314 | INFO     | architecture information:
[2025-10-13 12:12:43] 2025-10-13 10:12:25,314 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:12:43] 2025-10-13 10:12:25,327 | INFO     | cat /etc/os-release:
[2025-10-13 12:12:43] NAME="CentOS Linux"
[2025-10-13 12:12:43] VERSION="7 (Core)"
[2025-10-13 12:12:43] ID="centos"
[2025-10-13 12:12:43] ID_LIKE="rhel fedora"
[2025-10-13 12:12:43] VERSION_ID="7"
[2025-10-13 12:12:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:12:43] ANSI_COLOR="0;31"
[2025-10-13 12:12:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:12:43] HOME_URL="https://www.centos.org/"
[2025-10-13 12:12:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:12:43] 
[2025-10-13 12:12:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:12:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:12:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:12:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:12:43] 
[2025-10-13 12:12:43] 2025-10-13 10:12:25,328 | INFO     | ***************************************
[2025-10-13 12:12:43] 2025-10-13 10:12:25,830 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 12:12:43] 2025-10-13 10:12:25,846 | INFO     | sufficient remaining disk space (326213042176 B)
[2025-10-13 12:12:43] 2025-10-13 10:12:25,847 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:12:43] 2025-10-13 10:12:25,847 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:12:43] 2025-10-13 10:12:25,847 | INFO     | update_server=False
[2025-10-13 12:12:43] 2025-10-13 10:12:25,847 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:12:43] 2025-10-13 10:12:25,847 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:12:43] 2025-10-13 10:12:25,847 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 12:12:43] 2025-10-13 10:12:25,847 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:12:43] 2025-10-13 10:12:25,847 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:12:43] 2025-10-13 10:12:25,847 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:12:43] 2025-10-13 10:12:25,847 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:12:43] 2025-10-13 10:12:25,848 | INFO     | aborting loop
[2025-10-13 12:12:43] 2025-10-13 10:12:25,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:12:43] 2025-10-13 10:12:26,272 | INFO     | all job control threads have been joined
[2025-10-13 12:12:43] 2025-10-13 10:12:26,380 | INFO     | all data control threads have been joined
[2025-10-13 12:12:43] 2025-10-13 10:12:26,473 | INFO     | all payload control threads have been joined
[2025-10-13 12:12:43] 2025-10-13 10:12:26,852 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:26,853 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:26,853 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:26,937 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:27,278 | INFO     | [job] control thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:27,383 | INFO     | [data] control thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:27,450 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:27,479 | INFO     | [payload] control thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:27,556 | INFO     | [job] validate thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:27,699 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:27,791 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:27,853 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:27,982 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:28,205 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:28,414 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:12:43] 2025-10-13 10:12:29,195 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-13 12:12:43] 2025-10-13 10:12:32,421 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:36,255 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:12:43] 2025-10-13 10:12:36,757 | INFO     | job.realtimelogging is not enabled
[2025-10-13 12:12:43] 2025-10-13 10:12:37,763 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:12:43] 2025-10-13 10:12:38,744 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140586114684736)>', '<ExcThread(monitor, started 140584807294720)>']
[2025-10-13 12:12:43] 2025-10-13 10:12:38,908 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:12:43] 2025-10-13 10:12:38,908 | INFO     | [monitor] control thread has ended
[2025-10-13 12:12:43] 2025-10-13 10:12:43,769 | INFO     | all workflow threads have been joined
[2025-10-13 12:12:43] 2025-10-13 10:12:43,770 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:12:43] 2025-10-13 10:12:43,770 | INFO     | traces error code: 0
[2025-10-13 12:12:43] 2025-10-13 10:12:43,770 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:12:43] 2025-10-13 10:12:43,858 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:12:43] 2025-10-13 10:12:43,862 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:12:43] 2025-10-13 10:12:43,867 [wrapper] pilotpid: 625440
[2025-10-13 12:12:43] 2025-10-13 10:12:43,871 [wrapper] Pilot exit status: 0
[2025-10-13 12:12:43] 2025-10-13 10:12:43,882 [wrapper] pandaids: 6840531993
[2025-10-13 12:12:43] 2025-10-13 10:12:43,909 [wrapper] cleanup supervisor_pilot  667089 625441
[2025-10-13 12:12:43] 2025-10-13 10:12:43,913 [wrapper] Test setup, not cleaning
[2025-10-13 12:12:43] 2025-10-13 10:12:43,917 [wrapper] apfmon messages muted
[2025-10-13 12:12:43] 2025-10-13 10:12:43,920 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:12:43] 2025-10-13 10:12:43,923 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:12:43]  *** Error codes and diagnostics ***
[2025-10-13 12:12:43]     "exeErrorCode": 0,
[2025-10-13 12:12:43]     "exeErrorDiag": "",
[2025-10-13 12:12:43]     "pilotErrorCode": 0,
[2025-10-13 12:12:43]     "pilotErrorDiag": "",
[2025-10-13 12:12:43]  *** Listing of results directory ***
[2025-10-13 12:12:43] total 416544
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:20 pilot3.tar.gz
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc      5112 Oct 12 20:22 queuedata.json
[2025-10-13 12:12:43] -rwx------ 1 boinc boinc     36292 Oct 12 20:22 runpilot2-wrapper.sh
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc       100 Oct 13 10:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:12:43] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 10:57 run_atlas
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc       105 Oct 13 10:57 job.xml
[2025-10-13 12:12:43] -rw-r--r-- 2 boinc boinc 219647339 Oct 13 10:57 EVNT.46676267._004400.pool.root.1
[2025-10-13 12:12:43] -rw-r--r-- 2 boinc boinc    569680 Oct 13 10:57 input.tar.gz
[2025-10-13 12:12:43] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:57 start_atlas.sh
[2025-10-13 12:12:43] drwxrwx--x 2 boinc boinc      4096 Oct 13 10:57 shared
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:57 boinc_setup_complete
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc      6370 Oct 13 10:57 init_data.xml
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc         0 Oct 13 10:57 boinc_lockfile
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc      2550 Oct 13 10:57 pandaJob.out
[2025-10-13 12:12:43] -rw------- 1 boinc boinc    972857 Oct 13 10:57 agis_schedconf.cvmfs.json
[2025-10-13 12:12:43] -rw------- 1 boinc boinc   1560580 Oct 13 10:57 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:12:43] drwx------ 5 boinc boinc      4096 Oct 13 10:57 pilot3
[2025-10-13 12:12:43] -rw------- 1 boinc boinc 201131750 Oct 13 12:11 HITS.46676269._086014.pool.root.1
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc       529 Oct 13 12:12 boinc_task_state.xml
[2025-10-13 12:12:43] -rw------- 1 boinc boinc        95 Oct 13 12:12 pilot_heartbeat.json
[2025-10-13 12:12:43] -rw------- 1 boinc boinc      1030 Oct 13 12:12 memory_monitor_summary.json
[2025-10-13 12:12:43] -rw------- 1 boinc boinc    270602 Oct 13 12:12 log.46676269._086014.job.log.tgz.1
[2025-10-13 12:12:43] -rw------- 1 boinc boinc      7783 Oct 13 12:12 heartbeat.json
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc        27 Oct 13 12:12 wrapper_checkpoint.txt
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc      8192 Oct 13 12:12 boinc_mmap_file
[2025-10-13 12:12:43] -rw------- 1 boinc boinc      4628 Oct 13 12:12 pilotlog.txt
[2025-10-13 12:12:43] -rw------- 1 boinc boinc    661538 Oct 13 12:12 log.46676269._086014.job.log.1
[2025-10-13 12:12:43] -rw------- 1 boinc boinc       357 Oct 13 12:12 output.list
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc       620 Oct 13 12:12 runtime_log
[2025-10-13 12:12:43] -rw------- 1 boinc boinc    952320 Oct 13 12:12 result.tar.gz
[2025-10-13 12:12:43] -rw------- 1 boinc boinc       661 Oct 13 12:12 yp7KDmStFS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmB2kNDmrfSMqn.diag
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc      8792 Oct 13 12:12 runtime_log.err
[2025-10-13 12:12:43] -rw-r--r-- 1 boinc boinc     12843 Oct 13 12:12 stderr.txt
[2025-10-13 12:12:43] HITS file was successfully produced:
[2025-10-13 12:12:43] -rw------- 1 boinc boinc 201131750 Oct 13 12:11 shared/HITS.pool.root.1
[2025-10-13 12:12:43]  *** Contents of shared directory: ***
[2025-10-13 12:12:44] total 412436
[2025-10-13 12:12:44] -rw-r--r-- 2 boinc boinc 219647339 Oct 13 10:57 ATLAS.root_0
[2025-10-13 12:12:44] -rw-r--r-- 2 boinc boinc    569680 Oct 13 10:57 input.tar.gz
[2025-10-13 12:12:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 10:57 start_atlas.sh
[2025-10-13 12:12:44] -rw------- 1 boinc boinc 201131750 Oct 13 12:11 HITS.pool.root.1
[2025-10-13 12:12:44] -rw------- 1 boinc boinc    952320 Oct 13 12:12 result.tar.gz
12:12:45 (621634): run_atlas exited; CPU time 16966.221394
12:12:45 (621634): called boinc_finish(0)

</stderr_txt>
]]>

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