Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:59:40 (2028137): wrapper (7.7.26015): starting
18:59:40 (2028137): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 18:59:40] Arguments: --nthreads 8
[2025-10-12 18:59:40] Threads: 8
[2025-10-12 18:59:40] Checking for CVMFS
[2025-10-12 18:59:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:59:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:59:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:59:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:59:40] 2.13.1.0 4140 4869 72384 151640 3 188 35688060 39288833 2030 16776704 0 16308431 99.997 166090 34674 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 18:59:40] CVMFS is ok
[2025-10-12 18:59:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:59:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:59:40] Further information can be found at the LHC@home message board.
[2025-10-12 18:59:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:59:40] Checking for apptainer binary...
[2025-10-12 18:59:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 18:59:40] Running /usr/bin/apptainer --version
[2025-10-12 18:59:40] apptainer version 1.4.3-1.el9
[2025-10-12 18:59:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:59:40] c-210-16.aglt2.org
[2025-10-12 18:59:40] apptainer works
[2025-10-12 18:59:40] Set ATHENA_PROC_NUMBER=8
[2025-10-12 18:59:40] Set ATHENA_CORE_NUMBER=8
[2025-10-12 18:59:40] Starting ATLAS job with PandaID=6840392509
[2025-10-12 18:59:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:04:18]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:04:18]  status_code=0
[2025-10-12 20:04:18]  storage_token=
[2025-10-12 20:04:18]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6840392509/log.46676269._083970.job.log.tgz.1
[2025-10-12 20:04:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/ab/log.46676269._083970.job.log.tgz.1
[2025-10-12 20:04:18]  workdir=None
[2025-10-12 20:04:18] ]
[2025-10-12 20:04:18] 2025-10-13 00:03:39,015 | INFO     | transferring file log.46676269._083970.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6840392509/log.46676269._083970.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 20:04:18] 2025-10-13 00:03:39,015 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6840392509/log.46676269._083970.job.log.tgz.1 /tmp/boinchome/slots/4/log.46676269._083970.job
[2025-10-12 20:04:18] 2025-10-13 00:03:39,027 | INFO     | adding to output.list: log.46676269._083970.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/ab/log.46676269._083970.job.log.tg
[2025-10-12 20:04:18] 2025-10-13 00:03:39,027 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 20:04:18] 2025-10-13 00:03:39,027 | INFO     | summary of transferred files:
[2025-10-12 20:04:18] 2025-10-13 00:03:39,027 | INFO     |  -- lfn=log.46676269._083970.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 20:04:18] 2025-10-13 00:03:39,028 | INFO     | stage-out finished correctly
[2025-10-12 20:04:18] 2025-10-13 00:03:39,174 | INFO     | monitor loop #290: job 0:6840392509 is in state 'finished'
[2025-10-12 20:04:18] 2025-10-13 00:03:39,174 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:04:18] 2025-10-13 00:03:40,968 | INFO     | time since job start (3832s) is within the limit (172800.0s)
[2025-10-12 20:04:18] 2025-10-13 00:03:41,677 | INFO     | monitor loop #291: job 0:6840392509 is in state 'finished'
[2025-10-12 20:04:18] 2025-10-13 00:03:41,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:04:18] 2025-10-13 00:03:42,174 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 20:04:18] 2025-10-13 00:03:42,974 | INFO     | time since job start (3834s) is within the limit (172800.0s)
[2025-10-12 20:04:18] 2025-10-13 00:03:43,419 | INFO     | job 6840392509 has state=finished
[2025-10-12 20:04:18] 2025-10-13 00:03:43,419 | INFO     | preparing for final server update for job 6840392509 in state='finished'
[2025-10-12 20:04:18] 2025-10-13 00:03:43,420 | INFO     | this job has now completed (state=finished)
[2025-10-12 20:04:18] 2025-10-13 00:03:43,420 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 20:04:18] 2025-10-13 00:03:43,420 | INFO     | log transfer has been attempted: DONE
[2025-10-12 20:04:18] 2025-10-13 00:03:43,420 | INFO     | job 6840392509 has finished - writing final server update
[2025-10-12 20:04:18] 2025-10-13 00:03:43,421 | INFO     | total number of processed events: 400 (read)
[2025-10-12 20:04:18] 2025-10-13 00:03:43,421 | INFO     | executing command: lscpu
[2025-10-12 20:04:18] 2025-10-13 00:03:43,446 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 20:04:18] 2025-10-13 00:03:44,133 | INFO     | PID=2031846 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:04:18] 2025-10-13 00:03:44,133 | INFO     | .. there are 5 such processes running
[2025-10-12 20:04:18] 2025-10-13 00:03:44,180 | INFO     | monitor loop #292: job 0:6840392509 is in state 'finished'
[2025-10-12 20:04:18] 2025-10-13 00:03:44,180 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:04:18] 2025-10-13 00:03:45,134 | INFO     | time since job start (3837s) is within the limit (172800.0s)
[2025-10-12 20:04:18] 2025-10-13 00:03:45,928 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 20:04:18] 2025-10-13 00:03:45,934 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2762.822225
[2025-10-12 20:04:18] 2025-10-13 00:03:45,940 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6840392509/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:04:18] 2025-10-13 00:03:45,941 | INFO     | extracted standard info from prmon json
[2025-10-12 20:04:18] 2025-10-13 00:03:45,941 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 20:04:18] 2025-10-13 00:03:45,941 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 20:04:18] 2025-10-13 00:03:45,942 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 20:04:18] 2025-10-13 00:03:45,942 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 20:04:18] 2025-10-13 00:03:45,943 | INFO     | fitting pss+swap vs Time
[2025-10-12 20:04:18] 2025-10-13 00:03:45,944 | INFO     | sum of square deviations: 54438230.0
[2025-10-12 20:04:18] 2025-10-13 00:03:45,944 | INFO     | sum of deviations: -2367208395.0
[2025-10-12 20:04:18] 2025-10-13 00:03:45,944 | INFO     | mean x: 1760311991.5
[2025-10-12 20:04:18] 2025-10-13 00:03:45,944 | INFO     | mean y: 2568685.6071428573
[2025-10-12 20:04:18] 2025-10-13 00:03:45,944 | INFO     | -- intersect: 76548505687.93013
[2025-10-12 20:04:18] 2025-10-13 00:03:45,944 | INFO     | intersect: 76548505687.93013
[2025-10-12 20:04:18] 2025-10-13 00:03:45,945 | INFO     | chi2: 0.011674413539196718
[2025-10-12 20:04:18] 2025-10-13 00:03:45,945 | INFO     | -- intersect: 76548505687.93013
[2025-10-12 20:04:18] 2025-10-13 00:03:45,945 | INFO     | current memory leak: -43.48 B/s (using 56 data points, chi2=0.01)
[2025-10-12 20:04:18] 2025-10-13 00:03:45,945 | INFO     | could have reported an average CPU frequency of 2693 MHz (6 samples)
[2025-10-12 20:04:18] 2025-10-13 00:03:45,945 | INFO     | ..............................
[2025-10-12 20:04:18] 2025-10-13 00:03:45,945 | INFO     | . Timing measurements:
[2025-10-12 20:04:18] 2025-10-13 00:03:45,946 | INFO     | . get job = 0 s
[2025-10-12 20:04:18] 2025-10-13 00:03:45,946 | INFO     | . initial setup = 2 s
[2025-10-12 20:04:18] 2025-10-13 00:03:45,946 | INFO     | . payload setup = 3 s
[2025-10-12 20:04:18] 2025-10-13 00:03:45,946 | INFO     | . stage-in = 0 s
[2025-10-12 20:04:18] 2025-10-13 00:03:45,946 | INFO     | . payload execution = 3809 s
[2025-10-12 20:04:18] 2025-10-13 00:03:45,946 | INFO     | . stage-out = 0 s
[2025-10-12 20:04:18] 2025-10-13 00:03:45,946 | INFO     | . log creation = 0 s
[2025-10-12 20:04:18] 2025-10-13 00:03:45,946 | INFO     | ..............................
[2025-10-12 20:04:18] 2025-10-13 00:03:46,033 | INFO     | 
[2025-10-12 20:04:18] 2025-10-13 00:03:46,033 | INFO     | job summary report
[2025-10-12 20:04:18] 2025-10-13 00:03:46,033 | INFO     | --------------------------------------------------
[2025-10-12 20:04:18] 2025-10-13 00:03:46,033 | INFO     | PanDA job id: 6840392509
[2025-10-12 20:04:18] 2025-10-13 00:03:46,033 | INFO     | task id: 46676269
[2025-10-12 20:04:18] 2025-10-13 00:03:46,033 | INFO     | errors: (none)
[2025-10-12 20:04:18] 2025-10-13 00:03:46,033 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | pilot state: finished 
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | transexitcode: 0
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | exeerrorcode: 0
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | exeerrordiag: 
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | exitcode: 0
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | exitmsg: OK
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | cpuconsumptiontime: 28335 s
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | nevents: 400
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | neventsw: 0
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | pid: 2039536
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | pgrp: 2039536
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | corecount: 8
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | event service: False
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | sizes: {0: 2348857, 1: 2348857, 3: 2349147, 11: 2349175, 3816: 2375047, 3817: 2384045, 3820: 2384229, 3824: 2384423}
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | --------------------------------------------------
[2025-10-12 20:04:18] 2025-10-13 00:03:46,034 | INFO     | 
[2025-10-12 20:04:18] 2025-10-13 00:03:46,035 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-12 20:04:18] 2025-10-13 00:03:46,046 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,046 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,046 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,046 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,046 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,046 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,047 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,047 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,047 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,047 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,047 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,047 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,047 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,047 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,048 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,048 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,048 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,048 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:04:18] 2025-10-13 00:03:46,048 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,048 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:04:18] 2025-10-13 00:03:46,048 | INFO     | job 6840392509 has completed (purged errors)
[2025-10-12 20:04:18] 2025-10-13 00:03:46,048 | INFO     | overall cleanup function is called
[2025-10-12 20:04:18] 2025-10-13 00:03:47,056 | INFO     | --- collectZombieJob: --- 10, [2039536]
[2025-10-12 20:04:18] 2025-10-13 00:03:47,057 | INFO     | zombie collector waiting for pid 2039536
[2025-10-12 20:04:18] 2025-10-13 00:03:47,057 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:04:18] 2025-10-13 00:03:47,057 | INFO     | collected zombie processes
[2025-10-12 20:04:18] 2025-10-13 00:03:47,057 | INFO     | will attempt to kill all subprocesses of pid=2039536
[2025-10-12 20:04:18] 2025-10-13 00:03:47,222 | INFO     | process IDs to be killed: [2039536] (in reverse order)
[2025-10-12 20:04:18] 2025-10-13 00:03:47,258 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:04:18] 2025-10-13 00:03:47,259 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:04:18] 2025-10-13 00:03:47,262 | INFO     | did not find any defunct processes belonging to 2039536
[2025-10-12 20:04:18] 2025-10-13 00:03:47,265 | INFO     | did not find any defunct processes belonging to 2039536
[2025-10-12 20:04:18] 2025-10-13 00:03:47,265 | INFO     | ready for new job
[2025-10-12 20:04:18] 2025-10-13 00:03:47,265 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:04:18] 2025-10-13 00:03:47,266 | INFO     | ***************************************
[2025-10-12 20:04:18] 2025-10-13 00:03:47,266 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:04:18] 2025-10-13 00:03:47,266 | INFO     | ***************************************
[2025-10-12 20:04:18] 2025-10-13 00:03:47,266 | INFO     | 
[2025-10-12 20:04:18] 2025-10-13 00:03:47,267 | INFO     | architecture information:
[2025-10-12 20:04:18] 2025-10-13 00:03:47,267 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:04:18] 2025-10-13 00:03:47,275 | INFO     | cat /etc/os-release:
[2025-10-12 20:04:18] NAME="CentOS Linux"
[2025-10-12 20:04:18] VERSION="7 (Core)"
[2025-10-12 20:04:18] ID="centos"
[2025-10-12 20:04:18] ID_LIKE="rhel fedora"
[2025-10-12 20:04:18] VERSION_ID="7"
[2025-10-12 20:04:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:04:18] ANSI_COLOR="0;31"
[2025-10-12 20:04:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:04:18] HOME_URL="https://www.centos.org/"
[2025-10-12 20:04:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:04:18] 
[2025-10-12 20:04:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:04:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:04:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:04:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:04:18] 
[2025-10-12 20:04:18] 2025-10-13 00:03:47,276 | INFO     | ***************************************
[2025-10-12 20:04:18] 2025-10-13 00:03:47,779 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-12 20:04:18] 2025-10-13 00:03:47,788 | INFO     | sufficient remaining disk space (51146391552 B)
[2025-10-12 20:04:18] 2025-10-13 00:03:47,789 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:04:18] 2025-10-13 00:03:47,789 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:04:18] 2025-10-13 00:03:47,789 | INFO     | update_server=False
[2025-10-12 20:04:18] 2025-10-13 00:03:47,789 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:04:18] 2025-10-13 00:03:47,789 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:04:18] 2025-10-13 00:03:47,789 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:04:18] 2025-10-13 00:03:47,789 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:04:18] 2025-10-13 00:03:47,790 | INFO     | aborting loop
[2025-10-12 20:04:18] 2025-10-13 00:03:48,072 | INFO     | all job control threads have been joined
[2025-10-12 20:04:18] 2025-10-13 00:03:48,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:04:18] 2025-10-13 00:03:48,667 | INFO     | all data control threads have been joined
[2025-10-12 20:04:18] 2025-10-13 00:03:48,746 | INFO     | all payload control threads have been joined
[2025-10-12 20:04:18] 2025-10-13 00:03:48,793 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:48,794 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:48,795 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:49,077 | INFO     | [job] control thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:49,177 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:49,549 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:49,581 | INFO     | [job] validate thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:49,672 | INFO     | [data] control thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:49,751 | INFO     | [payload] control thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:49,779 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:49,795 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:49,859 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:49,889 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:50,021 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:52,238 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:03:52,977 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:04:18] 2025-10-13 00:03:58,699 | INFO     | job.realtimelogging is not enabled
[2025-10-12 20:04:18] 2025-10-13 00:03:59,703 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:04:18] 2025-10-13 00:04:00,060 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140170003023680)>', '<ExcThread(monitor, started 140169629898496)>']
[2025-10-12 20:04:18] 2025-10-13 00:04:05,085 | INFO     | all workflow threads have been joined
[2025-10-12 20:04:18] 2025-10-13 00:04:05,085 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:04:18] 2025-10-13 00:04:05,085 | INFO     | traces error code: 0
[2025-10-12 20:04:18] 2025-10-13 00:04:05,086 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:04:18] 2025-10-13 00:04:18,403 | INFO     | PID=2031846 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:04:18] 2025-10-13 00:04:18,403 | INFO     | .. there are 5 such processes running
[2025-10-12 20:04:18] 2025-10-13 00:04:18,404 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:04:18] 2025-10-13 00:04:18,404 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:04:18] 2025-10-13 00:04:18,404 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:04:18] 2025-10-13 00:04:18,404 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:04:18] 2025-10-13 00:04:18,404 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 20:04:18] 2025-10-13 00:04:18,404 | INFO     | [monitor] control thread has ended
[2025-10-12 20:04:18] 2025-10-13 00:04:18,493 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:04:18] 2025-10-13 00:04:18,494 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:04:18] 2025-10-13 00:04:18,496 [wrapper] pilotpid: 2031846
[2025-10-12 20:04:18] 2025-10-13 00:04:18,498 [wrapper] Pilot exit status: 0
[2025-10-12 20:04:18] 2025-10-13 00:04:18,505 [wrapper] pandaids: 6840392509
[2025-10-12 20:04:18] 2025-10-13 00:04:18,529 [wrapper] cleanup supervisor_pilot 2148927 2031847
[2025-10-12 20:04:18] 2025-10-13 00:04:18,531 [wrapper] Test setup, not cleaning
[2025-10-12 20:04:18] 2025-10-13 00:04:18,533 [wrapper] apfmon messages muted
[2025-10-12 20:04:18] 2025-10-13 00:04:18,535 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:04:18] 2025-10-13 00:04:18,536 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:04:18]  *** Error codes and diagnostics ***
[2025-10-12 20:04:18]     "exeErrorCode": 0,
[2025-10-12 20:04:18]     "exeErrorDiag": "",
[2025-10-12 20:04:18]     "pilotErrorCode": 0,
[2025-10-12 20:04:18]     "pilotErrorDiag": "",
[2025-10-12 20:04:18]  *** Listing of results directory ***
[2025-10-12 20:04:18] total 406468
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 12:42 pilot3.tar.gz
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 12:47 queuedata.json
[2025-10-12 20:04:18] -rwx------. 1 boincer umatlas     36292 Oct 12 12:47 runpilot2-wrapper.sh
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas       100 Oct 12 18:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:04:18] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 18:59 run_atlas
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas       105 Oct 12 18:59 job.xml
[2025-10-12 20:04:18] -rw-r--r--. 2 boincer umatlas 220473628 Oct 12 18:59 EVNT.46676267._004786.pool.root.1
[2025-10-12 20:04:18] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 18:59 start_atlas.sh
[2025-10-12 20:04:18] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 18:59 shared
[2025-10-12 20:04:18] -rw-r--r--. 2 boincer umatlas    569683 Oct 12 18:59 input.tar.gz
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas         0 Oct 12 18:59 boinc_lockfile
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 18:59 pandaJob.out
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas    975603 Oct 12 18:59 agis_schedconf.cvmfs.json
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas   1560580 Oct 12 18:59 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:04:18] drwx------. 5 boincer umatlas      4096 Oct 12 18:59 pilot3
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas      6659 Oct 12 20:02 init_data.xml
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas 190066427 Oct 12 20:03 HITS.46676269._083970.pool.root.1
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas       529 Oct 12 20:03 boinc_task_state.xml
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas      1044 Oct 12 20:03 memory_monitor_summary.json
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas        95 Oct 12 20:03 pilot_heartbeat.json
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas    311408 Oct 12 20:03 log.46676269._083970.job.log.tgz.1
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas      7816 Oct 12 20:03 heartbeat.json
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 20:04 boinc_mmap_file
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas        27 Oct 12 20:04 wrapper_checkpoint.txt
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas       892 Oct 12 20:04 pilotlog.txt
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas    580934 Oct 12 20:04 log.46676269._083970.job.log.1
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas       357 Oct 12 20:04 output.list
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas       620 Oct 12 20:04 runtime_log
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas    911360 Oct 12 20:04 result.tar.gz
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 20:04 runtime_log.err
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas       650 Oct 12 20:04 cGJLDmRPES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1ikNDmOwYvjn.diag
[2025-10-12 20:04:18] -rw-r--r--. 1 boincer umatlas     22119 Oct 12 20:04 stderr.txt
[2025-10-12 20:04:18] HITS file was successfully produced:
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas 190066427 Oct 12 20:03 shared/HITS.pool.root.1
[2025-10-12 20:04:18]  *** Contents of shared directory: ***
[2025-10-12 20:04:18] total 402392
[2025-10-12 20:04:18] -rw-r--r--. 2 boincer umatlas 220473628 Oct 12 18:59 ATLAS.root_0
[2025-10-12 20:04:18] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 18:59 start_atlas.sh
[2025-10-12 20:04:18] -rw-r--r--. 2 boincer umatlas    569683 Oct 12 18:59 input.tar.gz
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas 190066427 Oct 12 20:03 HITS.pool.root.1
[2025-10-12 20:04:18] -rw-------. 1 boincer umatlas    911360 Oct 12 20:04 result.tar.gz
20:04:20 (2028137): run_atlas exited; CPU time 28409.824019
20:04:20 (2028137): called boinc_finish(0)

</stderr_txt>
]]>

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