Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:53:47 (8874): wrapper (7.7.26015): starting
17:53:47 (8874): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 17:53:47] Arguments: --nthreads 8
[2025-10-12 17:53:47] Threads: 8
[2025-10-12 17:53:47] Checking for CVMFS
[2025-10-12 17:53:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:53:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:53:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:53:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:53:47] 2.11.2.0 1598 216768 123900 151638 2 188 10941431 20275201 917 130560 1 222772083 99.992 11723139 11188 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 17:53:47] CVMFS is ok
[2025-10-12 17:53:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:53:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:53:47] Further information can be found at the LHC@home message board.
[2025-10-12 17:53:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:53:47] Checking for apptainer binary...
[2025-10-12 17:53:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:53:47] Running /usr/bin/apptainer --version
[2025-10-12 17:53:47] apptainer version 1.3.2-1.el7
[2025-10-12 17:53:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:53:48] c-205-36.aglt2.org
[2025-10-12 17:53:48] apptainer works
[2025-10-12 17:53:48] Set ATHENA_PROC_NUMBER=8
[2025-10-12 17:53:48] Set ATHENA_CORE_NUMBER=8
[2025-10-12 17:53:48] Starting ATLAS job with PandaID=6840225022
[2025-10-12 17:53:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:04:20]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:04:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840225022/log.46676269._082316.job.log.tgz.1
[2025-10-12 19:04:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ac/e9/log.46676269._082316.job.log.tgz.1
[2025-10-12 19:04:20]  workdir=None
[2025-10-12 19:04:20] ]
[2025-10-12 19:04:20] 2025-10-12 23:03:41,309 | INFO     | transferring file log.46676269._082316.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840225022/log.46676269._082316.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 19:04:20] 2025-10-12 23:03:41,309 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840225022/log.46676269._082316.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._082316.job
[2025-10-12 19:04:20] 2025-10-12 23:03:41,327 | INFO     | adding to output.list: log.46676269._082316.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ac/e9/log.46676269._082316.job.log.tg
[2025-10-12 19:04:20] 2025-10-12 23:03:41,328 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 19:04:20] 2025-10-12 23:03:41,328 | INFO     | summary of transferred files:
[2025-10-12 19:04:20] 2025-10-12 23:03:41,329 | INFO     |  -- lfn=log.46676269._082316.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 19:04:20] 2025-10-12 23:03:41,329 | INFO     | stage-out finished correctly
[2025-10-12 19:04:20] 2025-10-12 23:03:41,412 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 19:04:20] 2025-10-12 23:03:41,492 | INFO     | job 6840225022 has state=finished
[2025-10-12 19:04:20] 2025-10-12 23:03:41,493 | INFO     | preparing for final server update for job 6840225022 in state='finished'
[2025-10-12 19:04:20] 2025-10-12 23:03:41,493 | INFO     | this job has now completed (state=finished)
[2025-10-12 19:04:20] 2025-10-12 23:03:41,494 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 19:04:20] 2025-10-12 23:03:41,494 | INFO     | log transfer has been attempted: DONE
[2025-10-12 19:04:20] 2025-10-12 23:03:41,494 | INFO     | job 6840225022 has finished - writing final server update
[2025-10-12 19:04:20] 2025-10-12 23:03:41,494 | INFO     | total number of processed events: 400 (read)
[2025-10-12 19:04:20] 2025-10-12 23:03:41,495 | INFO     | executing command: lscpu
[2025-10-12 19:04:20] 2025-10-12 23:03:41,523 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 19:04:20] 2025-10-12 23:03:41,761 | INFO     | monitor loop #312: job 0:6840225022 is in state 'finished'
[2025-10-12 19:04:20] 2025-10-12 23:03:41,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:04:20] 2025-10-12 23:03:42,837 | INFO     | time since job start (4182s) is within the limit (172800.0s)
[2025-10-12 19:04:20] 2025-10-12 23:03:44,264 | INFO     | monitor loop #313: job 0:6840225022 is in state 'finished'
[2025-10-12 19:04:20] 2025-10-12 23:03:44,264 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:04:20] 2025-10-12 23:03:44,842 | INFO     | time since job start (4184s) is within the limit (172800.0s)
[2025-10-12 19:04:20] 2025-10-12 23:03:46,765 | INFO     | monitor loop #314: job 0:6840225022 is in state 'finished'
[2025-10-12 19:04:20] 2025-10-12 23:03:46,766 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:04:20] 2025-10-12 23:03:46,847 | INFO     | time since job start (4186s) is within the limit (172800.0s)
[2025-10-12 19:04:20] 2025-10-12 23:03:47,171 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 19:04:20] 2025-10-12 23:03:47,175 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 1987.9208125000002
[2025-10-12 19:04:20] 2025-10-12 23:03:47,178 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840225022/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:04:20] 2025-10-12 23:03:47,179 | INFO     | extracted standard info from prmon json
[2025-10-12 19:04:20] 2025-10-12 23:03:47,179 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:04:20] 2025-10-12 23:03:47,180 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:04:20] 2025-10-12 23:03:47,180 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:04:20] 2025-10-12 23:03:47,180 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:04:20] 2025-10-12 23:03:47,182 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:04:20] 2025-10-12 23:03:47,182 | INFO     | sum of square deviations: 73882315.5
[2025-10-12 19:04:20] 2025-10-12 23:03:47,183 | INFO     | sum of deviations: -485067669.0
[2025-10-12 19:04:20] 2025-10-12 23:03:47,183 | INFO     | mean x: 1760308230.5
[2025-10-12 19:04:20] 2025-10-12 23:03:47,183 | INFO     | mean y: 2518519.64516129
[2025-10-12 19:04:20] 2025-10-12 23:03:47,183 | INFO     | -- intersect: 11559663207.268679
[2025-10-12 19:04:20] 2025-10-12 23:03:47,183 | INFO     | intersect: 11559663207.268679
[2025-10-12 19:04:20] 2025-10-12 23:03:47,183 | INFO     | chi2: 0.008880009009219366
[2025-10-12 19:04:20] 2025-10-12 23:03:47,183 | INFO     | -- intersect: 11559663207.268679
[2025-10-12 19:04:20] 2025-10-12 23:03:47,183 | INFO     | current memory leak: -6.57 B/s (using 62 data points, chi2=0.01)
[2025-10-12 19:04:20] 2025-10-12 23:03:47,184 | INFO     | could have reported an average CPU frequency of 2228 MHz (6 samples)
[2025-10-12 19:04:20] 2025-10-12 23:03:47,184 | INFO     | ..............................
[2025-10-12 19:04:20] 2025-10-12 23:03:47,184 | INFO     | . Timing measurements:
[2025-10-12 19:04:20] 2025-10-12 23:03:47,184 | INFO     | . get job = 0 s
[2025-10-12 19:04:20] 2025-10-12 23:03:47,184 | INFO     | . initial setup = 2 s
[2025-10-12 19:04:20] 2025-10-12 23:03:47,184 | INFO     | . payload setup = 6 s
[2025-10-12 19:04:20] 2025-10-12 23:03:47,184 | INFO     | . stage-in = 0 s
[2025-10-12 19:04:20] 2025-10-12 23:03:47,185 | INFO     | . payload execution = 4154 s
[2025-10-12 19:04:20] 2025-10-12 23:03:47,185 | INFO     | . stage-out = 0 s
[2025-10-12 19:04:20] 2025-10-12 23:03:47,185 | INFO     | . log creation = 0 s
[2025-10-12 19:04:20] 2025-10-12 23:03:47,185 | INFO     | ..............................
[2025-10-12 19:04:20] 2025-10-12 23:03:47,260 | INFO     | 
[2025-10-12 19:04:20] 2025-10-12 23:03:47,261 | INFO     | job summary report
[2025-10-12 19:04:20] 2025-10-12 23:03:47,261 | INFO     | --------------------------------------------------
[2025-10-12 19:04:20] 2025-10-12 23:03:47,261 | INFO     | PanDA job id: 6840225022
[2025-10-12 19:04:20] 2025-10-12 23:03:47,261 | INFO     | task id: 46676269
[2025-10-12 19:04:20] 2025-10-12 23:03:47,261 | INFO     | errors: (none)
[2025-10-12 19:04:20] 2025-10-12 23:03:47,261 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:04:20] 2025-10-12 23:03:47,261 | INFO     | pilot state: finished 
[2025-10-12 19:04:20] 2025-10-12 23:03:47,261 | INFO     | transexitcode: 0
[2025-10-12 19:04:20] 2025-10-12 23:03:47,261 | INFO     | exeerrorcode: 0
[2025-10-12 19:04:20] 2025-10-12 23:03:47,261 | INFO     | exeerrordiag: 
[2025-10-12 19:04:20] 2025-10-12 23:03:47,262 | INFO     | exitcode: 0
[2025-10-12 19:04:20] 2025-10-12 23:03:47,262 | INFO     | exitmsg: OK
[2025-10-12 19:04:20] 2025-10-12 23:03:47,262 | INFO     | cpuconsumptiontime: 30407 s
[2025-10-12 19:04:20] 2025-10-12 23:03:47,262 | INFO     | nevents: 400
[2025-10-12 19:04:20] 2025-10-12 23:03:47,262 | INFO     | neventsw: 0
[2025-10-12 19:04:20] 2025-10-12 23:03:47,262 | INFO     | pid: 18993
[2025-10-12 19:04:20] 2025-10-12 23:03:47,262 | INFO     | pgrp: 18993
[2025-10-12 19:04:20] 2025-10-12 23:03:47,262 | INFO     | corecount: 8
[2025-10-12 19:04:20] 2025-10-12 23:03:47,262 | INFO     | event service: False
[2025-10-12 19:04:20] 2025-10-12 23:03:47,262 | INFO     | sizes: {0: 2348628, 1: 2348883, 5: 2349145, 12: 2349201, 4163: 2375207, 4164: 2375206, 4165: 2384444, 4171: 2384582}
[2025-10-12 19:04:20] 2025-10-12 23:03:47,263 | INFO     | --------------------------------------------------
[2025-10-12 19:04:20] 2025-10-12 23:03:47,263 | INFO     | 
[2025-10-12 19:04:20] 2025-10-12 23:03:47,263 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 19:04:20] 2025-10-12 23:03:47,285 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,285 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,285 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,285 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,285 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,285 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,286 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,286 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,286 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,286 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,286 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,286 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,286 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,287 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,287 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,287 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:04:20] 2025-10-12 23:03:47,287 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,287 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:04:20] 2025-10-12 23:03:47,287 | INFO     | job 6840225022 has completed (purged errors)
[2025-10-12 19:04:20] 2025-10-12 23:03:47,287 | INFO     | overall cleanup function is called
[2025-10-12 19:04:20] 2025-10-12 23:03:47,987 | INFO     | PID=12563 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:04:20] 2025-10-12 23:03:47,987 | INFO     | .. there are 2 such processes running
[2025-10-12 19:04:20] 2025-10-12 23:03:48,295 | INFO     | --- collectZombieJob: --- 10, [18993]
[2025-10-12 19:04:20] 2025-10-12 23:03:48,296 | INFO     | zombie collector waiting for pid 18993
[2025-10-12 19:04:20] 2025-10-12 23:03:48,296 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:04:20] 2025-10-12 23:03:48,296 | INFO     | collected zombie processes
[2025-10-12 19:04:20] 2025-10-12 23:03:48,296 | INFO     | will attempt to kill all subprocesses of pid=18993
[2025-10-12 19:04:20] 2025-10-12 23:03:48,413 | INFO     | process IDs to be killed: [18993] (in reverse order)
[2025-10-12 19:04:20] 2025-10-12 23:03:48,471 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:04:20] 2025-10-12 23:03:48,472 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:04:20] 2025-10-12 23:03:48,475 | INFO     | did not find any defunct processes belonging to 18993
[2025-10-12 19:04:20] 2025-10-12 23:03:48,478 | INFO     | did not find any defunct processes belonging to 18993
[2025-10-12 19:04:20] 2025-10-12 23:03:48,478 | INFO     | ready for new job
[2025-10-12 19:04:20] 2025-10-12 23:03:48,479 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:04:20] 2025-10-12 23:03:48,480 | INFO     | ***************************************
[2025-10-12 19:04:20] 2025-10-12 23:03:48,480 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:04:20] 2025-10-12 23:03:48,481 | INFO     | ***************************************
[2025-10-12 19:04:20] 2025-10-12 23:03:48,481 | INFO     | 
[2025-10-12 19:04:20] 2025-10-12 23:03:48,482 | INFO     | architecture information:
[2025-10-12 19:04:20] 2025-10-12 23:03:48,482 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:04:20] 2025-10-12 23:03:48,498 | INFO     | cat /etc/os-release:
[2025-10-12 19:04:20] NAME="CentOS Linux"
[2025-10-12 19:04:20] VERSION="7 (Core)"
[2025-10-12 19:04:20] ID="centos"
[2025-10-12 19:04:20] ID_LIKE="rhel fedora"
[2025-10-12 19:04:20] VERSION_ID="7"
[2025-10-12 19:04:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:04:20] ANSI_COLOR="0;31"
[2025-10-12 19:04:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:04:20] HOME_URL="https://www.centos.org/"
[2025-10-12 19:04:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:04:20] 
[2025-10-12 19:04:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:04:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:04:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:04:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:04:20] 
[2025-10-12 19:04:20] 2025-10-12 23:03:48,498 | INFO     | ***************************************
[2025-10-12 19:04:20] 2025-10-12 23:03:49,001 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 19:04:20] 2025-10-12 23:03:49,019 | INFO     | sufficient remaining disk space (32743882752 B)
[2025-10-12 19:04:20] 2025-10-12 23:03:49,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:04:20] 2025-10-12 23:03:49,020 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:04:20] 2025-10-12 23:03:49,020 | INFO     | update_server=False
[2025-10-12 19:04:20] 2025-10-12 23:03:49,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:04:20] 2025-10-12 23:03:49,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:04:20] 2025-10-12 23:03:49,269 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 19:04:20] 2025-10-12 23:03:49,269 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 19:04:20] 2025-10-12 23:03:49,270 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:04:20] 2025-10-12 23:03:49,270 | INFO     | will abort loop
[2025-10-12 19:04:20] 2025-10-12 23:03:49,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:04:20] 2025-10-12 23:03:49,856 | INFO     | all data control threads have been joined
[2025-10-12 19:04:20] 2025-10-12 23:03:50,026 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:50,026 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:50,275 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:50,334 | INFO     | all payload control threads have been joined
[2025-10-12 19:04:20] 2025-10-12 23:03:50,399 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:50,614 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:50,664 | INFO     | all job control threads have been joined
[2025-10-12 19:04:20] 2025-10-12 23:03:50,862 | INFO     | [data] control thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:51,152 | INFO     | [job] validate thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:51,312 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:51,319 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:51,336 | INFO     | [payload] control thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:51,426 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:51,428 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:51,470 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:51,669 | INFO     | [job] control thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:52,001 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:04:20] 2025-10-12 23:03:56,006 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:03:59,584 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:04:20] 2025-10-12 23:04:00,589 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:04:20] 2025-10-12 23:04:06,756 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:04:20] 2025-10-12 23:04:08,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648031041344)>', '<ExcThread(monitor, started 140647738623744)>']
[2025-10-12 19:04:20] 2025-10-12 23:04:13,224 | INFO     | all workflow threads have been joined
[2025-10-12 19:04:20] 2025-10-12 23:04:13,224 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:04:20] 2025-10-12 23:04:13,224 | INFO     | traces error code: 0
[2025-10-12 19:04:20] 2025-10-12 23:04:13,225 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:04:20] 2025-10-12 23:04:20,206 | INFO     | PID=12563 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:04:20] 2025-10-12 23:04:20,206 | INFO     | .. there are 2 such processes running
[2025-10-12 19:04:20] 2025-10-12 23:04:20,207 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:04:20] 2025-10-12 23:04:20,207 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:04:20] 2025-10-12 23:04:20,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:04:20] 2025-10-12 23:04:20,207 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:04:20] 2025-10-12 23:04:20,207 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 19:04:20] 2025-10-12 23:04:20,207 | INFO     | [monitor] control thread has ended
[2025-10-12 19:04:20] 2025-10-12 23:04:20,303 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:04:20] 2025-10-12 23:04:20,307 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:04:20] 2025-10-12 23:04:20,311 [wrapper] pilotpid: 12563
[2025-10-12 19:04:20] 2025-10-12 23:04:20,314 [wrapper] Pilot exit status: 0
[2025-10-12 19:04:20] 2025-10-12 23:04:20,326 [wrapper] pandaids: 6840225022
[2025-10-12 19:04:20] 2025-10-12 23:04:20,367 [wrapper] cleanup supervisor_pilot 29535 12564
[2025-10-12 19:04:20] 2025-10-12 23:04:20,371 [wrapper] Test setup, not cleaning
[2025-10-12 19:04:20] 2025-10-12 23:04:20,375 [wrapper] apfmon messages muted
[2025-10-12 19:04:20] 2025-10-12 23:04:20,378 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:04:20] 2025-10-12 23:04:20,382 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:04:20]  *** Error codes and diagnostics ***
[2025-10-12 19:04:20]     "exeErrorCode": 0,
[2025-10-12 19:04:20]     "exeErrorDiag": "",
[2025-10-12 19:04:20]     "pilotErrorCode": 0,
[2025-10-12 19:04:20]     "pilotErrorDiag": "",
[2025-10-12 19:04:20]  *** Listing of results directory ***
[2025-10-12 19:04:20] total 417304
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 11:38 queuedata.json
[2025-10-12 19:04:20] -rwx------ 1 boincer umatlas     36292 Oct 12 11:38 runpilot2-wrapper.sh
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas       100 Oct 12 17:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:04:20] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 17:53 run_atlas
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas       105 Oct 12 17:53 job.xml
[2025-10-12 19:04:20] -rw-r--r-- 2 boincer umatlas 220889195 Oct 12 17:53 EVNT.46676267._004575.pool.root.1
[2025-10-12 19:04:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:53 start_atlas.sh
[2025-10-12 19:04:20] drwxrwx--x 2 boincer umatlas      4096 Oct 12 17:53 shared
[2025-10-12 19:04:20] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 17:53 input.tar.gz
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas         0 Oct 12 17:53 boinc_lockfile
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 17:53 pandaJob.out
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas    975528 Oct 12 17:53 agis_schedconf.cvmfs.json
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas   1560580 Oct 12 17:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:04:20] drwx------ 5 boincer umatlas      4096 Oct 12 17:54 pilot3
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas      6135 Oct 12 19:00 init_data.xml
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas 200659846 Oct 12 19:03 HITS.46676269._082316.pool.root.1
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas       530 Oct 12 19:03 boinc_task_state.xml
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas      1046 Oct 12 19:03 memory_monitor_summary.json
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas    308163 Oct 12 19:03 log.46676269._082316.job.log.tgz.1
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas      7833 Oct 12 19:03 heartbeat.json
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 19:04 boinc_mmap_file
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas        27 Oct 12 19:04 wrapper_checkpoint.txt
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas        95 Oct 12 19:04 pilot_heartbeat.json
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas       890 Oct 12 19:04 pilotlog.txt
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas    625555 Oct 12 19:04 log.46676269._082316.job.log.1
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas       357 Oct 12 19:04 output.list
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas       620 Oct 12 19:04 runtime_log
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas    952320 Oct 12 19:04 result.tar.gz
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas       657 Oct 12 19:04 zgFLDmSKDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpRkNDmhQQKyn.diag
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 19:04 runtime_log.err
[2025-10-12 19:04:20] -rw-r--r-- 1 boincer umatlas     22252 Oct 12 19:04 stderr.txt
[2025-10-12 19:04:20] HITS file was successfully produced:
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas 200659846 Oct 12 19:03 shared/HITS.pool.root.1
[2025-10-12 19:04:20]  *** Contents of shared directory: ***
[2025-10-12 19:04:20] total 413188
[2025-10-12 19:04:20] -rw-r--r-- 2 boincer umatlas 220889195 Oct 12 17:53 ATLAS.root_0
[2025-10-12 19:04:20] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:53 start_atlas.sh
[2025-10-12 19:04:20] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 17:53 input.tar.gz
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas 200659846 Oct 12 19:03 HITS.pool.root.1
[2025-10-12 19:04:20] -rw------- 1 boincer umatlas    952320 Oct 12 19:04 result.tar.gz
19:04:21 (8874): run_atlas exited; CPU time 30415.499933
19:04:21 (8874): called boinc_finish(0)

</stderr_txt>
]]>

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