Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:56:35 (27523): wrapper (7.7.26015): starting
17:56:35 (27523): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 17:56:35] Arguments: --nthreads 8
[2025-10-12 17:56:35] Threads: 8
[2025-10-12 17:56:35] Checking for CVMFS
[2025-10-12 17:56:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:56:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:56:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:56:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:56:35] 2.11.2.0 2908 105629 84360 151638 2 57 14479065 20275200 1 130560 2 51631101 99.988 3360110 19759 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 17:56:35] CVMFS is ok
[2025-10-12 17:56:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:56:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:56:35] Further information can be found at the LHC@home message board.
[2025-10-12 17:56:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:56:35] Checking for apptainer binary...
[2025-10-12 17:56:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:56:35] Running /usr/bin/apptainer --version
[2025-10-12 17:56:35] apptainer version 1.3.2-1.el7
[2025-10-12 17:56:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:56:36] c-115-5.aglt2.org
[2025-10-12 17:56:36] apptainer works
[2025-10-12 17:56:36] Set ATHENA_PROC_NUMBER=8
[2025-10-12 17:56:36] Set ATHENA_CORE_NUMBER=8
[2025-10-12 17:56:36] Starting ATLAS job with PandaID=6840390983
[2025-10-12 17:56:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:46:11]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:46:11] 2025-10-12 23:45:23,195 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:46:11] 2025-10-12 23:45:23,196 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:46:11] 2025-10-12 23:45:23,196 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:46:11] 2025-10-12 23:45:23,200 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:46:11] 2025-10-12 23:45:23,200 | INFO     | sum of square deviations: 379832238.0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,201 | INFO     | sum of deviations: 8874054788.000004
[2025-10-12 19:46:11] 2025-10-12 23:45:23,201 | INFO     | mean x: 1760309478.0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,201 | INFO     | mean y: 2454737.2897196263
[2025-10-12 19:46:11] 2025-10-12 23:45:23,201 | INFO     | -- intersect: -41123814148.83807
[2025-10-12 19:46:11] 2025-10-12 23:45:23,202 | INFO     | intersect: -41123814148.83807
[2025-10-12 19:46:11] 2025-10-12 23:45:23,202 | INFO     | chi2: 2.0922623439300327
[2025-10-12 19:46:11] 2025-10-12 23:45:23,202 | INFO     | sum of square deviations: 329031285.5
[2025-10-12 19:46:11] 2025-10-12 23:45:23,203 | INFO     | sum of deviations: 15204907336.0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,203 | INFO     | mean x: 1760309325.5
[2025-10-12 19:46:11] 2025-10-12 23:45:23,203 | INFO     | mean y: 2472937.294117647
[2025-10-12 19:46:11] 2025-10-12 23:45:23,203 | INFO     | -- intersect: -81343409221.75719
[2025-10-12 19:46:11] 2025-10-12 23:45:23,203 | INFO     | intersect: -81343409221.75719
[2025-10-12 19:46:11] 2025-10-12 23:45:23,203 | INFO     | chi2: 1.3226862399529251
[2025-10-12 19:46:11] 2025-10-12 23:45:23,203 | INFO     | current chi2=1.3226862399529251 (change=36.782008059828804 %)
[2025-10-12 19:46:11] 2025-10-12 23:45:23,204 | INFO     | sum of square deviations: 282974608.0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,204 | INFO     | sum of deviations: 14362439630.0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,204 | INFO     | mean x: 1760309173.0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,204 | INFO     | mean y: 2470149.649484536
[2025-10-12 19:46:11] 2025-10-12 23:45:23,205 | INFO     | -- intersect: -89342416326.34035
[2025-10-12 19:46:11] 2025-10-12 23:45:23,205 | INFO     | intersect: -89342416326.34035
[2025-10-12 19:46:11] 2025-10-12 23:45:23,205 | INFO     | chi2: 1.324473925374254
[2025-10-12 19:46:11] 2025-10-12 23:45:23,205 | INFO     | current chi2=1.324473925374254 (change=-0.13515566786212374 %)
[2025-10-12 19:46:11] 2025-10-12 23:45:23,205 | INFO     | right removable region: 96
[2025-10-12 19:46:11] 2025-10-12 23:45:23,205 | INFO     | sum of square deviations: 329031285.5
[2025-10-12 19:46:11] 2025-10-12 23:45:23,206 | INFO     | sum of deviations: -5195454607.0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,206 | INFO     | mean x: 1760309630.5
[2025-10-12 19:46:11] 2025-10-12 23:45:23,206 | INFO     | mean y: 2495940.8039215687
[2025-10-12 19:46:11] 2025-10-12 23:45:23,206 | INFO     | -- intersect: 27798055763.1166
[2025-10-12 19:46:11] 2025-10-12 23:45:23,206 | INFO     | intersect: 27798055763.1166
[2025-10-12 19:46:11] 2025-10-12 23:45:23,207 | INFO     | chi2: 0.8121707070690611
[2025-10-12 19:46:11] 2025-10-12 23:45:23,207 | INFO     | current chi2=0.8121707070690611 (change=61.182176344888575 %)
[2025-10-12 19:46:11] 2025-10-12 23:45:23,207 | INFO     | sum of square deviations: 282974608.0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,207 | INFO     | sum of deviations: -5092550779.0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,208 | INFO     | mean x: 1760309783.0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,208 | INFO     | mean y: 2495691.0824742266
[2025-10-12 19:46:11] 2025-10-12 23:45:23,208 | INFO     | -- intersect: 31681899790.47068
[2025-10-12 19:46:11] 2025-10-12 23:45:23,208 | INFO     | intersect: 31681899790.47068
[2025-10-12 19:46:11] 2025-10-12 23:45:23,208 | INFO     | chi2: 0.8046644133891259
[2025-10-12 19:46:11] 2025-10-12 23:45:23,208 | INFO     | current chi2=0.8046644133891259 (change=0.9242261035273943 %)
[2025-10-12 19:46:11] 2025-10-12 23:45:23,208 | INFO     | left removable region: 20
[2025-10-12 19:46:11] 2025-10-12 23:45:23,209 | INFO     | sum of square deviations: 136095575.0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,209 | INFO     | sum of deviations: 355796865.5
[2025-10-12 19:46:11] 2025-10-12 23:45:23,209 | INFO     | mean x: 1760309752.5
[2025-10-12 19:46:11] 2025-10-12 23:45:23,209 | INFO     | mean y: 2521398.3552631577
[2025-10-12 19:46:11] 2025-10-12 23:45:23,209 | INFO     | -- intersect: -4599484892.066603
[2025-10-12 19:46:11] 2025-10-12 23:45:23,209 | INFO     | intersect: -4599484892.066603
[2025-10-12 19:46:11] 2025-10-12 23:45:23,210 | INFO     | chi2: 0.0002083220335380464
[2025-10-12 19:46:11] 2025-10-12 23:45:23,210 | INFO     | -- intersect: -4599484892.066603
[2025-10-12 19:46:11] 2025-10-12 23:45:23,210 | INFO     | current memory leak: 2.61 B/s (using 76 data points, chi2=0.00)
[2025-10-12 19:46:11] 2025-10-12 23:45:23,210 | INFO     | could have reported an average CPU frequency of 2099 MHz (7 samples)
[2025-10-12 19:46:11] 2025-10-12 23:45:23,210 | INFO     | ..............................
[2025-10-12 19:46:11] 2025-10-12 23:45:23,210 | INFO     | . Timing measurements:
[2025-10-12 19:46:11] 2025-10-12 23:45:23,211 | INFO     | . get job = 0 s
[2025-10-12 19:46:11] 2025-10-12 23:45:23,211 | INFO     | . initial setup = 2 s
[2025-10-12 19:46:11] 2025-10-12 23:45:23,211 | INFO     | . payload setup = 8 s
[2025-10-12 19:46:11] 2025-10-12 23:45:23,211 | INFO     | . stage-in = 0 s
[2025-10-12 19:46:11] 2025-10-12 23:45:23,211 | INFO     | . payload execution = 6472 s
[2025-10-12 19:46:11] 2025-10-12 23:45:23,211 | INFO     | . stage-out = 0 s
[2025-10-12 19:46:11] 2025-10-12 23:45:23,211 | INFO     | . log creation = 0 s
[2025-10-12 19:46:11] 2025-10-12 23:45:23,211 | INFO     | ..............................
[2025-10-12 19:46:11] 2025-10-12 23:45:23,483 | INFO     | 
[2025-10-12 19:46:11] 2025-10-12 23:45:23,484 | INFO     | job summary report
[2025-10-12 19:46:11] 2025-10-12 23:45:23,484 | INFO     | --------------------------------------------------
[2025-10-12 19:46:11] 2025-10-12 23:45:23,484 | INFO     | PanDA job id: 6840390983
[2025-10-12 19:46:11] 2025-10-12 23:45:23,484 | INFO     | task id: 46676269
[2025-10-12 19:46:11] 2025-10-12 23:45:23,484 | INFO     | errors: (none)
[2025-10-12 19:46:11] 2025-10-12 23:45:23,484 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:46:11] 2025-10-12 23:45:23,484 | INFO     | pilot state: finished 
[2025-10-12 19:46:11] 2025-10-12 23:45:23,484 | INFO     | transexitcode: 0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,485 | INFO     | exeerrorcode: 0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,485 | INFO     | exeerrordiag: 
[2025-10-12 19:46:11] 2025-10-12 23:45:23,485 | INFO     | exitcode: 0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,485 | INFO     | exitmsg: OK
[2025-10-12 19:46:11] 2025-10-12 23:45:23,485 | INFO     | cpuconsumptiontime: 48041 s
[2025-10-12 19:46:11] 2025-10-12 23:45:23,485 | INFO     | nevents: 400
[2025-10-12 19:46:11] 2025-10-12 23:45:23,485 | INFO     | neventsw: 0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,485 | INFO     | pid: 5386
[2025-10-12 19:46:11] 2025-10-12 23:45:23,485 | INFO     | pgrp: 5386
[2025-10-12 19:46:11] 2025-10-12 23:45:23,486 | INFO     | corecount: 8
[2025-10-12 19:46:11] 2025-10-12 23:45:23,486 | INFO     | event service: False
[2025-10-12 19:46:11] 2025-10-12 23:45:23,486 | INFO     | sizes: {0: 2348857, 1: 2348857, 6: 2349147, 11: 2349175, 6481: 2376231, 6483: 2385229, 6484: 2385413, 6491: 2385607}
[2025-10-12 19:46:11] 2025-10-12 23:45:23,486 | INFO     | --------------------------------------------------
[2025-10-12 19:46:11] 2025-10-12 23:45:23,486 | INFO     | 
[2025-10-12 19:46:11] 2025-10-12 23:45:23,486 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 19:46:11] 2025-10-12 23:45:23,516 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,517 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,517 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,517 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,517 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,517 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,518 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,518 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,518 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,518 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,518 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,519 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,519 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,519 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,519 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,519 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,520 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:46:11] 2025-10-12 23:45:23,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,520 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:46:11] 2025-10-12 23:45:23,521 | INFO     | job 6840390983 has completed (purged errors)
[2025-10-12 19:46:11] 2025-10-12 23:45:23,521 | INFO     | overall cleanup function is called
[2025-10-12 19:46:11] 2025-10-12 23:45:24,529 | INFO     | --- collectZombieJob: --- 10, [5386]
[2025-10-12 19:46:11] 2025-10-12 23:45:24,529 | INFO     | zombie collector waiting for pid 5386
[2025-10-12 19:46:11] 2025-10-12 23:45:24,530 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:46:11] 2025-10-12 23:45:24,530 | INFO     | collected zombie processes
[2025-10-12 19:46:11] 2025-10-12 23:45:24,530 | INFO     | will attempt to kill all subprocesses of pid=5386
[2025-10-12 19:46:11] 2025-10-12 23:45:24,618 | INFO     | process IDs to be killed: [5386] (in reverse order)
[2025-10-12 19:46:11] 2025-10-12 23:45:24,679 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:46:11] 2025-10-12 23:45:24,680 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:46:11] 2025-10-12 23:45:24,684 | INFO     | did not find any defunct processes belonging to 5386
[2025-10-12 19:46:11] 2025-10-12 23:45:24,687 | INFO     | did not find any defunct processes belonging to 5386
[2025-10-12 19:46:11] 2025-10-12 23:45:24,687 | INFO     | ready for new job
[2025-10-12 19:46:11] 2025-10-12 23:45:24,688 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:46:11] 2025-10-12 23:45:24,690 | INFO     | ***************************************
[2025-10-12 19:46:11] 2025-10-12 23:45:24,690 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:46:11] 2025-10-12 23:45:24,690 | INFO     | ***************************************
[2025-10-12 19:46:11] 2025-10-12 23:45:24,690 | INFO     | 
[2025-10-12 19:46:11] 2025-10-12 23:45:24,691 | INFO     | architecture information:
[2025-10-12 19:46:11] 2025-10-12 23:45:24,692 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:46:11] 2025-10-12 23:45:24,713 | INFO     | cat /etc/os-release:
[2025-10-12 19:46:11] NAME="CentOS Linux"
[2025-10-12 19:46:11] VERSION="7 (Core)"
[2025-10-12 19:46:11] ID="centos"
[2025-10-12 19:46:11] ID_LIKE="rhel fedora"
[2025-10-12 19:46:11] VERSION_ID="7"
[2025-10-12 19:46:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:46:11] ANSI_COLOR="0;31"
[2025-10-12 19:46:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:46:11] HOME_URL="https://www.centos.org/"
[2025-10-12 19:46:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:46:11] 
[2025-10-12 19:46:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:46:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:46:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:46:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:46:11] 
[2025-10-12 19:46:11] 2025-10-12 23:45:24,713 | INFO     | ***************************************
[2025-10-12 19:46:11] 2025-10-12 23:45:25,216 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 19:46:11] 2025-10-12 23:45:25,239 | INFO     | sufficient remaining disk space (18588106752 B)
[2025-10-12 19:46:11] 2025-10-12 23:45:25,240 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:46:11] 2025-10-12 23:45:25,240 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:46:11] 2025-10-12 23:45:25,240 | INFO     | update_server=False
[2025-10-12 19:46:11] 2025-10-12 23:45:25,240 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:46:11] 2025-10-12 23:45:25,241 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:46:11] 2025-10-12 23:45:25,241 | INFO     | aborting loop
[2025-10-12 19:46:11] 2025-10-12 23:45:25,241 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:46:11] 2025-10-12 23:45:25,242 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:46:11] 2025-10-12 23:45:25,901 | INFO     | all data control threads have been joined
[2025-10-12 19:46:11] 2025-10-12 23:45:25,969 | INFO     | all job control threads have been joined
[2025-10-12 19:46:11] 2025-10-12 23:45:26,009 | INFO     | all payload control threads have been joined
[2025-10-12 19:46:11] 2025-10-12 23:45:26,246 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:26,247 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:26,247 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:26,459 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:26,768 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:46:11] 2025-10-12 23:45:26,900 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:26,907 | INFO     | [data] control thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:26,922 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:26,975 | INFO     | [job] control thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:27,016 | INFO     | [payload] control thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:27,247 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:27,354 | INFO     | [job] validate thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:27,532 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:27,658 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:27,727 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:30,775 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:36,166 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:46:11] 2025-10-12 23:45:37,171 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:46:11] 2025-10-12 23:45:54,980 | INFO     | PID=31264 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:46:11] 2025-10-12 23:45:54,981 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:46:11] 2025-10-12 23:45:54,981 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:46:11] 2025-10-12 23:45:54,981 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:46:11] 2025-10-12 23:46:04,749 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:46:11] 2025-10-12 23:46:06,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140164883670848)>', '<ExcThread(monitor, started 140164277974784)>']
[2025-10-12 19:46:11] 2025-10-12 23:46:07,043 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:46:11] 2025-10-12 23:46:07,043 | INFO     | [monitor] control thread has ended
[2025-10-12 19:46:11] 2025-10-12 23:46:11,203 | INFO     | all workflow threads have been joined
[2025-10-12 19:46:11] 2025-10-12 23:46:11,204 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:46:11] 2025-10-12 23:46:11,204 | INFO     | traces error code: 0
[2025-10-12 19:46:11] 2025-10-12 23:46:11,205 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:46:11] 2025-10-12 23:46:11,324 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:46:11] 2025-10-12 23:46:11,329 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:46:11] 2025-10-12 23:46:11,334 [wrapper] pilotpid: 31264
[2025-10-12 19:46:11] 2025-10-12 23:46:11,339 [wrapper] Pilot exit status: 0
[2025-10-12 19:46:11] 2025-10-12 23:46:11,358 [wrapper] pandaids: 6840390983
[2025-10-12 19:46:11] 2025-10-12 23:46:11,406 [wrapper] cleanup supervisor_pilot 13779 31265
[2025-10-12 19:46:11] 2025-10-12 23:46:11,410 [wrapper] Test setup, not cleaning
[2025-10-12 19:46:11] 2025-10-12 23:46:11,415 [wrapper] apfmon messages muted
[2025-10-12 19:46:11] 2025-10-12 23:46:11,419 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:46:11] 2025-10-12 23:46:11,424 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:46:11]  *** Error codes and diagnostics ***
[2025-10-12 19:46:11]     "exeErrorCode": 0,
[2025-10-12 19:46:11]     "exeErrorDiag": "",
[2025-10-12 19:46:11]     "pilotErrorCode": 0,
[2025-10-12 19:46:11]     "pilotErrorDiag": "",
[2025-10-12 19:46:11]  *** Listing of results directory ***
[2025-10-12 19:46:11] total 412224
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 12:01 pilot3.tar.gz
[2025-10-12 19:46:11] -rwx------ 1 boincer umatlas     36292 Oct 12 12:40 runpilot2-wrapper.sh
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 12:40 queuedata.json
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas       100 Oct 12 17:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:46:11] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 17:56 run_atlas
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas       105 Oct 12 17:56 job.xml
[2025-10-12 19:46:11] -rw-r--r-- 2 boincer umatlas 222539318 Oct 12 17:56 EVNT.46676267._004752.pool.root.1
[2025-10-12 19:46:11] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:56 start_atlas.sh
[2025-10-12 19:46:11] drwxrwx--x 2 boincer umatlas      4096 Oct 12 17:56 shared
[2025-10-12 19:46:11] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 17:56 input.tar.gz
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas         0 Oct 12 17:56 boinc_lockfile
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 17:56 pandaJob.out
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas    975528 Oct 12 17:56 agis_schedconf.cvmfs.json
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas   1560580 Oct 12 17:56 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:46:11] drwx------ 5 boincer umatlas      4096 Oct 12 17:56 pilot3
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas 193113406 Oct 12 19:44 HITS.46676269._083755.pool.root.1
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas       529 Oct 12 19:45 boinc_task_state.xml
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas      1050 Oct 12 19:45 memory_monitor_summary.json
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas    362611 Oct 12 19:45 log.46676269._083755.job.log.tgz.1
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas        95 Oct 12 19:45 pilot_heartbeat.json
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas      7845 Oct 12 19:45 heartbeat.json
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas      5908 Oct 12 19:45 init_data.xml
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 19:46 boinc_mmap_file
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas        27 Oct 12 19:46 wrapper_checkpoint.txt
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas      4818 Oct 12 19:46 pilotlog.txt
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas    922592 Oct 12 19:46 log.46676269._083755.job.log.1
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas       357 Oct 12 19:46 output.list
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas       620 Oct 12 19:46 runtime_log
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas   1300480 Oct 12 19:46 result.tar.gz
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas      8698 Oct 12 19:46 runtime_log.err
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas       657 Oct 12 19:46 JzaLDmPIES8n9Rq4apOajLDm4fhM0noT9bVof3QYDmvQUMDmVk2Njn.diag
[2025-10-12 19:46:11] -rw-r--r-- 1 boincer umatlas     20829 Oct 12 19:46 stderr.txt
[2025-10-12 19:46:11] HITS file was successfully produced:
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas 193113406 Oct 12 19:44 shared/HITS.pool.root.1
[2025-10-12 19:46:11]  *** Contents of shared directory: ***
[2025-10-12 19:46:11] total 407760
[2025-10-12 19:46:11] -rw-r--r-- 2 boincer umatlas 222539318 Oct 12 17:56 ATLAS.root_0
[2025-10-12 19:46:11] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:56 start_atlas.sh
[2025-10-12 19:46:11] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 17:56 input.tar.gz
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas 193113406 Oct 12 19:44 HITS.pool.root.1
[2025-10-12 19:46:11] -rw------- 1 boincer umatlas   1300480 Oct 12 19:46 result.tar.gz
19:46:13 (27523): run_atlas exited; CPU time 48069.718196
19:46:13 (27523): called boinc_finish(0)

</stderr_txt>
]]>

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