Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:53:12 (3874941): wrapper (7.7.26015): starting
14:53:12 (3874941): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 14:53:12] Arguments: --nthreads 12
[2025-10-12 14:53:12] Threads: 12
[2025-10-12 14:53:12] Checking for CVMFS
[2025-10-12 14:53:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:53:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:53:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:53:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:53:14] 2.11.5.0 2798 32060 339028 151638 1 270 37106292 45568000 18521 130560 0 338704842 99.879 125606934 20831 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 14:53:14] CVMFS is ok
[2025-10-12 14:53:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:53:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:53:14] Further information can be found at the LHC@home message board.
[2025-10-12 14:53:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:53:14] Checking for apptainer binary...
[2025-10-12 14:53:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:53:14] Running /usr/bin/apptainer --version
[2025-10-12 14:53:14] apptainer version 1.4.1-1.el9
[2025-10-12 14:53:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:53:14] wns0065.triumf.lcg
[2025-10-12 14:53:14] apptainer works
[2025-10-12 14:53:14] Set ATHENA_PROC_NUMBER=12
[2025-10-12 14:53:14] Set ATHENA_CORE_NUMBER=12
[2025-10-12 14:53:14] Starting ATLAS job with PandaID=6840748913
[2025-10-12 14:53:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:58:06]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:58:06] 2025-10-12 21:57:32,135 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:58:06] 2025-10-12 21:57:32,135 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:58:06] 2025-10-12 21:57:32,135 | WARNING  | wrong length of table data, x=[1760306089.0], y=[845.0] (must be same and length>=4)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,135 | INFO     | could have reported an average CPU frequency of 2646 MHz (4 samples)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | ..............................
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . Timing measurements:
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . get job = 0 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . initial setup = 3 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . payload setup = 17 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . stage-in = 0 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . payload execution = 44 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . stage-out = 0 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . log creation = 0 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | ..............................
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840748913/pilotlog.txt
[2025-10-12 14:58:06] 2025-10-12 21:57:32,195 | INFO     | time since job start (233s) is within the limit (172800.0s)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,235 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 14:58:06] - Log from pilotlog.txt -
[2025-10-12 14:58:06] 2025-10-12 21:57:32,134 | INFO     | extracted standard info from prmon json
[2025-10-12 14:58:06] 2025-10-12 21:57:32,134 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:58:06] 2025-10-12 21:57:32,134 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:58:06] 2025-10-12 21:57:32,135 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:58:06] 2025-10-12 21:57:32,135 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:58:06] 2025-10-12 21:57:32,135 | WARNING  | wrong length of table data, x=[1760306089.0], y=[845.0] (must be same and length>=4)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,135 | INFO     | could have reported an average CPU frequency of 2646 MHz (4 samples)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | ..............................
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . Timing measurements:
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . get job = 0 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . initial setup = 3 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . payload setup = 17 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . stage-in = 0 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . payload execution = 44 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . stage-out = 0 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . log creation = 0 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | ..............................
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840748913/pilotlog.txt
[2025-10-12 14:58:06] 2025-10-12 21:57:32,195 | INFO     | time since job start (233s) is within the limit (172800.0s)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,235 | WARNING  | 
[2025-10-12 14:58:06] [begin log extracts]
[2025-10-12 14:58:06] - Log from pilotlog.txt -
[2025-10-12 14:58:06] 2025-10-12 21:57:32,134 | INFO     | extracted standard info from prmon json
[2025-10-12 14:58:06] 2025-10-12 21:57:32,134 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:58:06] 2025-10-12 21:57:32,134 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:58:06] 2025-10-12 21:57:32,135 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:58:06] 2025-10-12 21:57:32,135 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:58:06] 2025-10-12 21:57:32,135 | WARNING  | wrong length of table data, x=[1760306089.0], y=[845.0] (must be same and length>=4)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,135 | INFO     | could have reported an average CPU frequency of 2646 MHz (4 samples)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | ..............................
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . Timing measurements:
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . get job = 0 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . initial setup = 3 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . payload setup = 17 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . stage-in = 0 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . payload execution = 44 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . stage-out = 0 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | . log creation = 0 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | ..............................
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 14:58:06] 2025-10-12 21:57:32,136 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840748913/pilotlog.txt
[2025-10-12 14:58:06] 2025-10-12 21:57:32,195 | INFO     | time since job start (233s) is within the limit (172800.0s)
[2025-10-12 14:58:06] [end log extracts]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,236 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,239 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 14:58:06] 2025-10-12 21:57:32,356 | INFO     | 
[2025-10-12 14:58:06] 2025-10-12 21:57:32,356 | INFO     | job summary report
[2025-10-12 14:58:06] 2025-10-12 21:57:32,356 | INFO     | --------------------------------------------------
[2025-10-12 14:58:06] 2025-10-12 21:57:32,356 | INFO     | PanDA job id: 6840748913
[2025-10-12 14:58:06] 2025-10-12 21:57:32,356 | INFO     | task id: 46676269
[2025-10-12 14:58:06] 2025-10-12 21:57:32,356 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 14:55:11,727 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 14:58:06] 2025-10-12 21:57:32,356 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | pilot state: failed 
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | transexitcode: 65
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | exeerrorcode: 65
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | exitcode: 65
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | cpuconsumptiontime: 18 s
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | nevents: 0
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | neventsw: 0
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | pid: 3900662
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | pgrp: 3900662
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | corecount: 12
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | event service: False
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | sizes: {0: 2348683, 1: 2348882, 11: 2348882, 14: 2349172, 22: 2349200, 65: 2372542, 66: 2372646, 67: 2376994, 198: 2377132}
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | --------------------------------------------------
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | 
[2025-10-12 14:58:06] 2025-10-12 21:57:32,357 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 14:58:06] 2025-10-12 21:57:32,389 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,389 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,389 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,389 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,389 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | job 6840748913 has completed (purged errors)
[2025-10-12 14:58:06] 2025-10-12 21:57:32,390 | INFO     | overall cleanup function is called
[2025-10-12 14:58:06] 2025-10-12 21:57:33,401 | INFO     | --- collectZombieJob: --- 10, [3900662]
[2025-10-12 14:58:06] 2025-10-12 21:57:33,401 | INFO     | zombie collector waiting for pid 3900662
[2025-10-12 14:58:06] 2025-10-12 21:57:33,402 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:58:06] 2025-10-12 21:57:33,402 | INFO     | collected zombie processes
[2025-10-12 14:58:06] 2025-10-12 21:57:33,402 | INFO     | will attempt to kill all subprocesses of pid=3900662
[2025-10-12 14:58:06] 2025-10-12 21:57:33,836 | INFO     | process IDs to be killed: [3900662] (in reverse order)
[2025-10-12 14:58:06] 2025-10-12 21:57:33,935 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:58:06] 2025-10-12 21:57:33,936 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:58:06] 2025-10-12 21:57:33,946 | INFO     | did not find any defunct processes belonging to 3900662
[2025-10-12 14:58:06] 2025-10-12 21:57:33,955 | INFO     | did not find any defunct processes belonging to 3900662
[2025-10-12 14:58:06] 2025-10-12 21:57:33,957 | INFO     | ready for new job
[2025-10-12 14:58:06] 2025-10-12 21:57:33,957 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:58:06] 2025-10-12 21:57:33,959 | INFO     | ***************************************
[2025-10-12 14:58:06] 2025-10-12 21:57:33,959 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:58:06] 2025-10-12 21:57:33,959 | INFO     | ***************************************
[2025-10-12 14:58:06] 2025-10-12 21:57:33,959 | INFO     | 
[2025-10-12 14:58:06] 2025-10-12 21:57:33,961 | INFO     | architecture information:
[2025-10-12 14:58:06] 2025-10-12 21:57:33,961 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:58:06] 2025-10-12 21:57:34,022 | INFO     | cat /etc/os-release:
[2025-10-12 14:58:06] NAME="CentOS Linux"
[2025-10-12 14:58:06] VERSION="7 (Core)"
[2025-10-12 14:58:06] ID="centos"
[2025-10-12 14:58:06] ID_LIKE="rhel fedora"
[2025-10-12 14:58:06] VERSION_ID="7"
[2025-10-12 14:58:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:58:06] ANSI_COLOR="0;31"
[2025-10-12 14:58:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:58:06] HOME_URL="https://www.centos.org/"
[2025-10-12 14:58:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:58:06] 
[2025-10-12 14:58:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:58:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:58:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:58:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:58:06] 
[2025-10-12 14:58:06] 2025-10-12 21:57:34,022 | INFO     | ***************************************
[2025-10-12 14:58:06] 2025-10-12 21:57:34,526 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 14:58:06] 2025-10-12 21:57:34,556 | INFO     | sufficient remaining disk space (1796025090048 B)
[2025-10-12 14:58:06] 2025-10-12 21:57:34,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:58:06] 2025-10-12 21:57:34,556 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:58:06] 2025-10-12 21:57:34,556 | INFO     | update_server=False
[2025-10-12 14:58:06] 2025-10-12 21:57:34,557 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:58:06] 2025-10-12 21:57:34,557 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:58:06] 2025-10-12 21:57:34,557 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:58:06] 2025-10-12 21:57:34,557 | INFO     | aborting loop
[2025-10-12 14:58:06] 2025-10-12 21:57:34,571 | INFO     | all payload control threads have been joined
[2025-10-12 14:58:06] 2025-10-12 21:57:34,594 | INFO     | all job control threads have been joined
[2025-10-12 14:58:06] 2025-10-12 21:57:34,706 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:58:06] 2025-10-12 21:57:35,085 | INFO     | all data control threads have been joined
[2025-10-12 14:58:06] 2025-10-12 21:57:35,568 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:35,568 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:35,577 | INFO     | [payload] control thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:35,600 | INFO     | [job] control thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:35,735 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:35,803 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:35,944 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:35,973 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:36,000 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:36,026 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:36,090 | INFO     | [data] control thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:36,722 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:36,948 | INFO     | [job] validate thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:36,968 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:37,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:58:06] 2025-10-12 21:57:38,388 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:38,577 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:58:06] 2025-10-12 21:57:38,934 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:58:06] 2025-10-12 21:57:39,510 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140482355754816)>', '<ExcThread(monitor, started 140481593861888)>']
[2025-10-12 14:58:06] 2025-10-12 21:57:44,535 | INFO     | all workflow threads have been joined
[2025-10-12 14:58:06] 2025-10-12 21:57:44,535 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:58:06] 2025-10-12 21:57:44,535 | INFO     | traces error code: 0
[2025-10-12 14:58:06] 2025-10-12 21:57:44,535 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:58:06] 2025-10-12 21:58:05,899 | INFO     | PID=3879774 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:58:06] 2025-10-12 21:58:05,899 | INFO     | .. there are 35 such processes running
[2025-10-12 14:58:06] 2025-10-12 21:58:05,900 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:58:06] 2025-10-12 21:58:05,900 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:58:06] 2025-10-12 21:58:05,900 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:58:06] 2025-10-12 21:58:05,900 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:58:06] 2025-10-12 21:58:05,900 | INFO     | [monitor] control thread has ended
[2025-10-12 14:58:06] 2025-10-12 21:58:06,145 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:58:06] 2025-10-12 21:58:06,150 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:58:06] 2025-10-12 21:58:06,152 [wrapper] pilotpid: 3879774
[2025-10-12 14:58:06] 2025-10-12 21:58:06,153 [wrapper] Pilot exit status: 0
[2025-10-12 14:58:06] 2025-10-12 21:58:06,171 [wrapper] pandaids: 6840748913
[2025-10-12 14:58:06] 2025-10-12 21:58:06,221 [wrapper] cleanup supervisor_pilot 3879790 3879775
[2025-10-12 14:58:06] 2025-10-12 21:58:06,223 [wrapper] Test setup, not cleaning
[2025-10-12 14:58:06] 2025-10-12 21:58:06,225 [wrapper] apfmon messages muted
[2025-10-12 14:58:06] 2025-10-12 21:58:06,226 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:58:06] 2025-10-12 21:58:06,228 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:58:06]  *** Error codes and diagnostics ***
[2025-10-12 14:58:06]     "exeErrorCode": 65,
[2025-10-12 14:58:06]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 14:58:06]     "pilotErrorCode": 1305,
[2025-10-12 14:58:06]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 14:58:06]  *** Listing of results directory ***
[2025-10-12 14:58:06] total 220024
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc    557409 Oct 12 13:08 pilot3.tar.gz
[2025-10-12 14:58:06] -rwx------. 1 boinc boinc     36292 Oct 12 13:20 runpilot2-wrapper.sh
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc      5112 Oct 12 13:20 queuedata.json
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc       100 Oct 12 14:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:58:06] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 14:53 run_atlas
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc       105 Oct 12 14:53 job.xml
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc      6594 Oct 12 14:53 init_data.xml
[2025-10-12 14:58:06] -rw-r--r--. 2 boinc boinc 221174671 Oct 12 14:53 EVNT.46676267._004491.pool.root.1
[2025-10-12 14:58:06] -rw-r--r--. 2 boinc boinc     15120 Oct 12 14:53 start_atlas.sh
[2025-10-12 14:58:06] drwxrwx--x. 2 boinc boinc      4096 Oct 12 14:53 shared
[2025-10-12 14:58:06] -rw-r--r--. 2 boinc boinc    569680 Oct 12 14:53 input.tar.gz
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc         0 Oct 12 14:53 boinc_lockfile
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc      2550 Oct 12 14:53 pandaJob.out
[2025-10-12 14:58:06] -rw-------. 1 boinc boinc    975528 Oct 12 14:53 agis_schedconf.cvmfs.json
[2025-10-12 14:58:06] -rw-------. 1 boinc boinc   1560580 Oct 12 14:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:58:06] drwx------. 5 boinc boinc      4096 Oct 12 14:53 pilot3
[2025-10-12 14:58:06] -rw-------. 1 boinc boinc       986 Oct 12 14:55 memory_monitor_summary.json
[2025-10-12 14:58:06] -rw-------. 1 boinc boinc     21728 Oct 12 14:55 log.46676269._088479.job.log.tgz.1
[2025-10-12 14:58:06] -rw-------. 1 boinc boinc      8436 Oct 12 14:57 heartbeat.json
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc       523 Oct 12 14:58 boinc_task_state.xml
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc      8192 Oct 12 14:58 boinc_mmap_file
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc        22 Oct 12 14:58 wrapper_checkpoint.txt
[2025-10-12 14:58:06] -rw-------. 1 boinc boinc        95 Oct 12 14:58 pilot_heartbeat.json
[2025-10-12 14:58:06] -rw-------. 1 boinc boinc       823 Oct 12 14:58 pilotlog.txt
[2025-10-12 14:58:06] -rw-------. 1 boinc boinc     90143 Oct 12 14:58 log.46676269._088479.job.log.1
[2025-10-12 14:58:06] -rw-------. 1 boinc boinc       188 Oct 12 14:58 output.list
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc       620 Oct 12 14:58 runtime_log
[2025-10-12 14:58:06] -rw-------. 1 boinc boinc    133120 Oct 12 14:58 result.tar.gz
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc      8528 Oct 12 14:58 runtime_log.err
[2025-10-12 14:58:06] -rw-------. 1 boinc boinc       644 Oct 12 14:58 KmONDmnjHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPQlNDmKhc72m.diag
[2025-10-12 14:58:06] -rw-r--r--. 1 boinc boinc     21740 Oct 12 14:58 stderr.txt
[2025-10-12 14:58:06] No HITS result produced
[2025-10-12 14:58:06]  *** Contents of shared directory: ***
[2025-10-12 14:58:06] total 216704
[2025-10-12 14:58:06] -rw-r--r--. 2 boinc boinc 221174671 Oct 12 14:53 ATLAS.root_0
[2025-10-12 14:58:06] -rw-r--r--. 2 boinc boinc     15120 Oct 12 14:53 start_atlas.sh
[2025-10-12 14:58:06] -rw-r--r--. 2 boinc boinc    569680 Oct 12 14:53 input.tar.gz
[2025-10-12 14:58:06] -rw-------. 1 boinc boinc    133120 Oct 12 14:58 result.tar.gz
14:58:08 (3874941): run_atlas exited; CPU time 26.839702
14:58:08 (3874941): called boinc_finish(0)

</stderr_txt>
]]>

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