Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:48:13 (31798): wrapper (7.7.26015): starting
17:48:13 (31798): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 17:48:13] Arguments: --nthreads 12
[2025-10-12 17:48:13] Threads: 12
[2025-10-12 17:48:13] Checking for CVMFS
[2025-10-12 17:48:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:48:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:48:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:48:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:48:13] 2.11.2.0 2914 223442 97556 151638 2 57 16133600 20275201 1 130560 1 109042764 99.983 13274079 12360 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 17:48:13] CVMFS is ok
[2025-10-12 17:48:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:48:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:48:13] Further information can be found at the LHC@home message board.
[2025-10-12 17:48:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:48:13] Checking for apptainer binary...
[2025-10-12 17:48:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:48:13] Running /usr/bin/apptainer --version
[2025-10-12 17:48:13] apptainer version 1.3.2-1.el7
[2025-10-12 17:48:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:48:15] c-205-5.aglt2.org
[2025-10-12 17:48:15] apptainer works
[2025-10-12 17:48:15] Set ATHENA_PROC_NUMBER=12
[2025-10-12 17:48:15] Set ATHENA_CORE_NUMBER=12
[2025-10-12 17:48:15] Starting ATLAS job with PandaID=6840428803
[2025-10-12 17:48:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:02:42]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:02:42]  mtime=0
[2025-10-12 19:02:42]  protocol_id=None
[2025-10-12 19:02:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 19:02:42]  replicas=None
[2025-10-12 19:02:42]  scope=mc23_13p6TeV
[2025-10-12 19:02:42]  status=None
[2025-10-12 19:02:42]  status_code=0
[2025-10-12 19:02:42]  storage_token=
[2025-10-12 19:02:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840428803/log.46676269._084387.job.log.tgz.1
[2025-10-12 19:02:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/47/e8/log.46676269._084387.job.log.tgz.1
[2025-10-12 19:02:42]  workdir=None
[2025-10-12 19:02:42] ]
[2025-10-12 19:02:42] 2025-10-12 23:01:39,027 | INFO     | transferring file log.46676269._084387.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840428803/log.46676269._084387.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 19:02:42] 2025-10-12 23:01:39,027 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840428803/log.46676269._084387.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._084387.job
[2025-10-12 19:02:42] 2025-10-12 23:01:39,050 | INFO     | adding to output.list: log.46676269._084387.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/47/e8/log.46676269._084387.job.log.tg
[2025-10-12 19:02:42] 2025-10-12 23:01:39,050 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 19:02:42] 2025-10-12 23:01:39,051 | INFO     | summary of transferred files:
[2025-10-12 19:02:42] 2025-10-12 23:01:39,051 | INFO     |  -- lfn=log.46676269._084387.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 19:02:42] 2025-10-12 23:01:39,051 | INFO     | stage-out finished correctly
[2025-10-12 19:02:42] 2025-10-12 23:01:40,703 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 19:02:42] 2025-10-12 23:01:40,775 | INFO     | time since job start (4390s) is within the limit (172800.0s)
[2025-10-12 19:02:42] 2025-10-12 23:01:40,784 | INFO     | job 6840428803 has state=finished
[2025-10-12 19:02:42] 2025-10-12 23:01:40,784 | INFO     | preparing for final server update for job 6840428803 in state='finished'
[2025-10-12 19:02:42] 2025-10-12 23:01:40,785 | INFO     | this job has now completed (state=finished)
[2025-10-12 19:02:42] 2025-10-12 23:01:40,785 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 19:02:42] 2025-10-12 23:01:40,785 | INFO     | log transfer has been attempted: DONE
[2025-10-12 19:02:42] 2025-10-12 23:01:40,785 | INFO     | job 6840428803 has finished - writing final server update
[2025-10-12 19:02:42] 2025-10-12 23:01:40,786 | INFO     | total number of processed events: 400 (read)
[2025-10-12 19:02:42] 2025-10-12 23:01:40,787 | INFO     | executing command: lscpu
[2025-10-12 19:02:42] 2025-10-12 23:01:40,813 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 19:02:42] 2025-10-12 23:01:42,780 | INFO     | time since job start (4392s) is within the limit (172800.0s)
[2025-10-12 19:02:42] 2025-10-12 23:01:43,922 | INFO     | PID=3200 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 19:02:42] 2025-10-12 23:01:44,010 | WARNING  | process 9581 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 19:02:42] 2025-10-12 23:01:44,010 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840428803/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:02:42] 2025-10-12 23:01:44,100 | INFO     | number of running child processes to parent process 9581: 1
[2025-10-12 19:02:42] 2025-10-12 23:01:44,100 | INFO     | maximum number of monitored processes: 6
[2025-10-12 19:02:42] 2025-10-12 23:01:44,923 | INFO     | time since job start (4394s) is within the limit (172800.0s)
[2025-10-12 19:02:42] 2025-10-12 23:01:45,571 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 19:02:42] 2025-10-12 23:01:45,575 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2025-10-12 19:02:42] 2025-10-12 23:01:45,578 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840428803/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:02:42] 2025-10-12 23:01:45,579 | INFO     | extracted standard info from prmon json
[2025-10-12 19:02:42] 2025-10-12 23:01:45,579 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:02:42] 2025-10-12 23:01:45,579 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:02:42] 2025-10-12 23:01:45,579 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:02:42] 2025-10-12 23:01:45,579 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:02:42] 2025-10-12 23:01:45,581 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:02:42] 2025-10-12 23:01:45,581 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 19:02:42] 2025-10-12 23:01:45,581 | INFO     | sum of deviations: -2771532072.0
[2025-10-12 19:02:42] 2025-10-12 23:01:45,581 | INFO     | mean x: 1760307997.0
[2025-10-12 19:02:42] 2025-10-12 23:01:45,582 | INFO     | mean y: 2711677.153846154
[2025-10-12 19:02:42] 2025-10-12 23:01:45,582 | INFO     | -- intersect: 57307759645.82227
[2025-10-12 19:02:42] 2025-10-12 23:01:45,582 | INFO     | intersect: 57307759645.82227
[2025-10-12 19:02:42] 2025-10-12 23:01:45,582 | INFO     | chi2: 0.08595601551935114
[2025-10-12 19:02:42] 2025-10-12 23:01:45,582 | INFO     | -- intersect: 57307759645.82227
[2025-10-12 19:02:42] 2025-10-12 23:01:45,582 | INFO     | current memory leak: -32.55 B/s (using 65 data points, chi2=0.09)
[2025-10-12 19:02:42] 2025-10-12 23:01:45,582 | INFO     | could have reported an average CPU frequency of 2026 MHz (6 samples)
[2025-10-12 19:02:42] 2025-10-12 23:01:45,583 | INFO     | ..............................
[2025-10-12 19:02:42] 2025-10-12 23:01:45,583 | INFO     | . Timing measurements:
[2025-10-12 19:02:42] 2025-10-12 23:01:45,583 | INFO     | . get job = 0 s
[2025-10-12 19:02:42] 2025-10-12 23:01:45,583 | INFO     | . initial setup = 2 s
[2025-10-12 19:02:42] 2025-10-12 23:01:45,583 | INFO     | . payload setup = 7 s
[2025-10-12 19:02:42] 2025-10-12 23:01:45,583 | INFO     | . stage-in = 0 s
[2025-10-12 19:02:42] 2025-10-12 23:01:45,583 | INFO     | . payload execution = 4359 s
[2025-10-12 19:02:42] 2025-10-12 23:01:45,583 | INFO     | . stage-out = 0 s
[2025-10-12 19:02:42] 2025-10-12 23:01:45,583 | INFO     | . log creation = 0 s
[2025-10-12 19:02:42] 2025-10-12 23:01:45,584 | INFO     | ..............................
[2025-10-12 19:02:42] 2025-10-12 23:01:45,666 | INFO     | 
[2025-10-12 19:02:42] 2025-10-12 23:01:45,667 | INFO     | job summary report
[2025-10-12 19:02:42] 2025-10-12 23:01:45,667 | INFO     | --------------------------------------------------
[2025-10-12 19:02:42] 2025-10-12 23:01:45,667 | INFO     | PanDA job id: 6840428803
[2025-10-12 19:02:42] 2025-10-12 23:01:45,667 | INFO     | task id: 46676269
[2025-10-12 19:02:42] 2025-10-12 23:01:45,667 | INFO     | errors: (none)
[2025-10-12 19:02:42] 2025-10-12 23:01:45,668 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:02:42] 2025-10-12 23:01:45,668 | INFO     | pilot state: finished 
[2025-10-12 19:02:42] 2025-10-12 23:01:45,668 | INFO     | transexitcode: 0
[2025-10-12 19:02:42] 2025-10-12 23:01:45,668 | INFO     | exeerrorcode: 0
[2025-10-12 19:02:42] 2025-10-12 23:01:45,668 | INFO     | exeerrordiag: 
[2025-10-12 19:02:42] 2025-10-12 23:01:45,668 | INFO     | exitcode: 0
[2025-10-12 19:02:42] 2025-10-12 23:01:45,669 | INFO     | exitmsg: OK
[2025-10-12 19:02:42] 2025-10-12 23:01:45,669 | INFO     | cpuconsumptiontime: 45949 s
[2025-10-12 19:02:42] 2025-10-12 23:01:45,669 | INFO     | nevents: 400
[2025-10-12 19:02:42] 2025-10-12 23:01:45,669 | INFO     | neventsw: 0
[2025-10-12 19:02:42] 2025-10-12 23:01:45,669 | INFO     | pid: 9581
[2025-10-12 19:02:42] 2025-10-12 23:01:45,669 | INFO     | pgrp: 9581
[2025-10-12 19:02:42] 2025-10-12 23:01:45,670 | INFO     | corecount: 12
[2025-10-12 19:02:42] 2025-10-12 23:01:45,670 | INFO     | event service: False
[2025-10-12 19:02:42] 2025-10-12 23:01:45,670 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4370: 2375250, 4372: 2384248, 4374: 2384304, 4379: 2384626}
[2025-10-12 19:02:42] 2025-10-12 23:01:45,670 | INFO     | --------------------------------------------------
[2025-10-12 19:02:42] 2025-10-12 23:01:45,670 | INFO     | 
[2025-10-12 19:02:42] 2025-10-12 23:01:45,670 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 19:02:42] 2025-10-12 23:01:45,695 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,696 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,696 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,696 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,696 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,696 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,696 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,697 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,697 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,697 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,697 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,697 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,698 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,698 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,698 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,698 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:02:42] 2025-10-12 23:01:45,698 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,699 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:02:42] 2025-10-12 23:01:45,699 | INFO     | job 6840428803 has completed (purged errors)
[2025-10-12 19:02:42] 2025-10-12 23:01:45,699 | INFO     | overall cleanup function is called
[2025-10-12 19:02:42] 2025-10-12 23:01:46,705 | INFO     | --- collectZombieJob: --- 10, [9581]
[2025-10-12 19:02:42] 2025-10-12 23:01:46,705 | INFO     | zombie collector waiting for pid 9581
[2025-10-12 19:02:42] 2025-10-12 23:01:46,705 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:02:42] 2025-10-12 23:01:46,706 | INFO     | collected zombie processes
[2025-10-12 19:02:42] 2025-10-12 23:01:46,706 | INFO     | will attempt to kill all subprocesses of pid=9581
[2025-10-12 19:02:42] 2025-10-12 23:01:46,799 | INFO     | process IDs to be killed: [9581] (in reverse order)
[2025-10-12 19:02:42] 2025-10-12 23:01:46,850 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:02:42] 2025-10-12 23:01:46,851 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:02:42] 2025-10-12 23:01:46,855 | INFO     | did not find any defunct processes belonging to 9581
[2025-10-12 19:02:42] 2025-10-12 23:01:46,858 | INFO     | did not find any defunct processes belonging to 9581
[2025-10-12 19:02:42] 2025-10-12 23:01:46,858 | INFO     | ready for new job
[2025-10-12 19:02:42] 2025-10-12 23:01:46,859 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:02:42] 2025-10-12 23:01:46,860 | INFO     | ***************************************
[2025-10-12 19:02:42] 2025-10-12 23:01:46,860 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:02:42] 2025-10-12 23:01:46,860 | INFO     | ***************************************
[2025-10-12 19:02:42] 2025-10-12 23:01:46,860 | INFO     | 
[2025-10-12 19:02:42] 2025-10-12 23:01:46,861 | INFO     | architecture information:
[2025-10-12 19:02:42] 2025-10-12 23:01:46,861 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:02:42] 2025-10-12 23:01:46,877 | INFO     | cat /etc/os-release:
[2025-10-12 19:02:42] NAME="CentOS Linux"
[2025-10-12 19:02:42] VERSION="7 (Core)"
[2025-10-12 19:02:42] ID="centos"
[2025-10-12 19:02:42] ID_LIKE="rhel fedora"
[2025-10-12 19:02:42] VERSION_ID="7"
[2025-10-12 19:02:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:02:42] ANSI_COLOR="0;31"
[2025-10-12 19:02:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:02:42] HOME_URL="https://www.centos.org/"
[2025-10-12 19:02:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:02:42] 
[2025-10-12 19:02:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:02:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:02:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:02:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:02:42] 
[2025-10-12 19:02:42] 2025-10-12 23:01:46,878 | INFO     | ***************************************
[2025-10-12 19:02:42] 2025-10-12 23:01:47,381 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 19:02:42] 2025-10-12 23:01:47,398 | INFO     | sufficient remaining disk space (29364322304 B)
[2025-10-12 19:02:42] 2025-10-12 23:01:47,398 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:02:42] 2025-10-12 23:01:47,398 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:02:42] 2025-10-12 23:01:47,399 | INFO     | update_server=False
[2025-10-12 19:02:42] 2025-10-12 23:01:47,399 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:02:42] 2025-10-12 23:01:47,399 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:02:42] 2025-10-12 23:01:47,399 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:02:42] 2025-10-12 23:01:47,400 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:02:42] 2025-10-12 23:01:47,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:02:42] 2025-10-12 23:01:47,610 | INFO     | aborting loop
[2025-10-12 19:02:42] 2025-10-12 23:01:47,925 | INFO     | all payload control threads have been joined
[2025-10-12 19:02:42] 2025-10-12 23:01:48,320 | INFO     | all data control threads have been joined
[2025-10-12 19:02:42] 2025-10-12 23:01:48,404 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:48,405 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:48,438 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:48,552 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:48,617 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:48,701 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:48,759 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:48,881 | INFO     | all job control threads have been joined
[2025-10-12 19:02:42] 2025-10-12 23:01:48,930 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:48,931 | INFO     | [payload] control thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:49,326 | INFO     | [data] control thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:49,406 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:49,545 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:49,684 | INFO     | [job] validate thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:49,685 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:49,887 | INFO     | [job] control thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:01:51,400 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:02:42] 2025-10-12 23:02:18,128 | INFO     | PID=3200 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 19:02:42] 2025-10-12 23:02:18,128 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:02:42] 2025-10-12 23:02:18,128 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:02:42] 2025-10-12 23:02:18,128 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:02:42] 2025-10-12 23:02:37,142 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:02:42] 2025-10-12 23:02:37,394 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140395307677504)>', '<ExcThread(monitor, started 140394419447552)>']
[2025-10-12 19:02:42] 2025-10-12 23:02:38,230 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:02:42] 2025-10-12 23:02:38,230 | INFO     | [monitor] control thread has ended
[2025-10-12 19:02:42] 2025-10-12 23:02:42,412 | INFO     | all workflow threads have been joined
[2025-10-12 19:02:42] 2025-10-12 23:02:42,412 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:02:42] 2025-10-12 23:02:42,413 | INFO     | traces error code: 0
[2025-10-12 19:02:42] 2025-10-12 23:02:42,413 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:02:42] 2025-10-12 23:02:42,521 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:02:42] 2025-10-12 23:02:42,525 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:02:42] 2025-10-12 23:02:42,528 [wrapper] pilotpid: 3200
[2025-10-12 19:02:42] 2025-10-12 23:02:42,532 [wrapper] Pilot exit status: 0
[2025-10-12 19:02:42] 2025-10-12 23:02:42,549 [wrapper] pandaids: 6840428803
[2025-10-12 19:02:42] 2025-10-12 23:02:42,599 [wrapper] cleanup supervisor_pilot 15894 3201
[2025-10-12 19:02:42] 2025-10-12 23:02:42,603 [wrapper] Test setup, not cleaning
[2025-10-12 19:02:42] 2025-10-12 23:02:42,607 [wrapper] apfmon messages muted
[2025-10-12 19:02:42] 2025-10-12 23:02:42,611 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:02:42] 2025-10-12 23:02:42,615 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:02:42]  *** Error codes and diagnostics ***
[2025-10-12 19:02:42]     "exeErrorCode": 0,
[2025-10-12 19:02:42]     "exeErrorDiag": "",
[2025-10-12 19:02:42]     "pilotErrorCode": 0,
[2025-10-12 19:02:42]     "pilotErrorDiag": "",
[2025-10-12 19:02:42]  *** Listing of results directory ***
[2025-10-12 19:02:42] total 412712
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 12:49 pilot3.tar.gz
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 13:11 queuedata.json
[2025-10-12 19:02:42] -rwx------ 1 boincer umatlas     36292 Oct 12 13:11 runpilot2-wrapper.sh
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas       100 Oct 12 17:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:02:42] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 17:48 run_atlas
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas       105 Oct 12 17:48 job.xml
[2025-10-12 19:02:42] -rw-r--r-- 2 boincer umatlas 221064967 Oct 12 17:48 EVNT.46676267._004800.pool.root.1
[2025-10-12 19:02:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:48 start_atlas.sh
[2025-10-12 19:02:42] drwxrwx--x 2 boincer umatlas      4096 Oct 12 17:48 shared
[2025-10-12 19:02:42] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 17:48 input.tar.gz
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas         0 Oct 12 17:48 boinc_lockfile
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 17:48 pandaJob.out
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas    975528 Oct 12 17:48 agis_schedconf.cvmfs.json
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas   1560580 Oct 12 17:48 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:02:42] drwx------ 5 boincer umatlas      4096 Oct 12 17:48 pilot3
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 19:00 init_data.xml
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas       529 Oct 12 19:01 boinc_task_state.xml
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas 195602560 Oct 12 19:01 HITS.46676269._084387.pool.root.1
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas        95 Oct 12 19:01 pilot_heartbeat.json
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas      1049 Oct 12 19:01 memory_monitor_summary.json
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas    386444 Oct 12 19:01 log.46676269._084387.job.log.tgz.1
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas      7851 Oct 12 19:01 heartbeat.json
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas        27 Oct 12 19:02 wrapper_checkpoint.txt
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 19:02 boinc_mmap_file
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas      4745 Oct 12 19:02 pilotlog.txt
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas    638217 Oct 12 19:02 log.46676269._084387.job.log.1
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas       357 Oct 12 19:02 output.list
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas       620 Oct 12 19:02 runtime_log
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas   1044480 Oct 12 19:02 result.tar.gz
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 19:02 runtime_log.err
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas       658 Oct 12 19:02 HkHNDmXmES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjnkNDmsiNg0n.diag
[2025-10-12 19:02:42] -rw-r--r-- 1 boincer umatlas     21776 Oct 12 19:02 stderr.txt
[2025-10-12 19:02:42] HITS file was successfully produced:
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas 195602560 Oct 12 19:01 shared/HITS.pool.root.1
[2025-10-12 19:02:42]  *** Contents of shared directory: ***
[2025-10-12 19:02:42] total 408504
[2025-10-12 19:02:42] -rw-r--r-- 2 boincer umatlas 221064967 Oct 12 17:48 ATLAS.root_0
[2025-10-12 19:02:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:48 start_atlas.sh
[2025-10-12 19:02:42] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 17:48 input.tar.gz
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas 195602560 Oct 12 19:01 HITS.pool.root.1
[2025-10-12 19:02:42] -rw------- 1 boincer umatlas   1044480 Oct 12 19:02 result.tar.gz
19:02:44 (31798): run_atlas exited; CPU time 45926.225801
19:02:44 (31798): called boinc_finish(0)

</stderr_txt>
]]>

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