Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:30:19 (892264): wrapper (7.7.26015): starting
04:30:19 (892264): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 04:30:19] Arguments: --nthreads 12
[2025-10-13 04:30:19] Threads: 12
[2025-10-13 04:30:19] Checking for CVMFS
[2025-10-13 04:30:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:30:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:30:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:30:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:30:20] 2.13.2.0 572020 764 63676 151645 2 57 2687744 4097024 0 130560 0 907063 99.992 33169 6368 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-13 04:30:20] CVMFS is ok
[2025-10-13 04:30:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:30:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:30:20] Further information can be found at the LHC@home message board.
[2025-10-13 04:30:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:30:20] Checking for apptainer binary...
[2025-10-13 04:30:20] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-13 04:30:20] apptainer is not installed, using version from CVMFS
[2025-10-13 04:30:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:30:20] pckelar8.cern.ch
[2025-10-13 04:30:20] apptainer works
[2025-10-13 04:30:20] Set ATHENA_PROC_NUMBER=12
[2025-10-13 04:30:20] Set ATHENA_CORE_NUMBER=12
[2025-10-13 04:30:20] Starting ATLAS job with PandaID=6840182234
[2025-10-13 04:30:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:39:40]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:39:40]  replicas=None
[2025-10-13 05:39:40]  scope=mc23_13p6TeV
[2025-10-13 05:39:40]  status=None
[2025-10-13 05:39:40]  status_code=0
[2025-10-13 05:39:40]  storage_token=
[2025-10-13 05:39:40]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6840182234/log.46676269._081084.job.log.tgz.1
[2025-10-13 05:39:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b1/d5/log.46676269._081084.job.log.tgz.1
[2025-10-13 05:39:40]  workdir=None
[2025-10-13 05:39:40] ]
[2025-10-13 05:39:40] 2025-10-13 03:38:55,057 | INFO     | transferring file log.46676269._081084.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6840182234/log.46676269._081084.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 05:39:40] 2025-10-13 03:38:55,057 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6840182234/log.46676269._081084.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._081084.job
[2025-10-13 05:39:40] 2025-10-13 03:38:55,073 | INFO     | adding to output.list: log.46676269._081084.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b1/d5/log.46676269._081084.job.log.tg
[2025-10-13 05:39:40] 2025-10-13 03:38:55,074 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:39:40] 2025-10-13 03:38:55,074 | INFO     | summary of transferred files:
[2025-10-13 05:39:40] 2025-10-13 03:38:55,074 | INFO     |  -- lfn=log.46676269._081084.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:39:40] 2025-10-13 03:38:55,074 | INFO     | stage-out finished correctly
[2025-10-13 05:39:40] 2025-10-13 03:38:55,382 | INFO     | monitor loop #311: job 0:6840182234 is in state 'finished'
[2025-10-13 05:39:40] 2025-10-13 03:38:55,382 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:39:40] 2025-10-13 03:38:55,966 | INFO     | time since job start (4108s) is within the limit (172800.0s)
[2025-10-13 05:39:40] 2025-10-13 03:38:55,972 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:39:40] 2025-10-13 03:38:56,033 | INFO     | job 6840182234 has state=finished
[2025-10-13 05:39:40] 2025-10-13 03:38:56,033 | INFO     | preparing for final server update for job 6840182234 in state='finished'
[2025-10-13 05:39:40] 2025-10-13 03:38:56,033 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:39:40] 2025-10-13 03:38:56,034 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:39:40] 2025-10-13 03:38:56,034 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:39:40] 2025-10-13 03:38:56,034 | INFO     | job 6840182234 has finished - writing final server update
[2025-10-13 05:39:40] 2025-10-13 03:38:56,034 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:39:40] 2025-10-13 03:38:56,035 | INFO     | executing command: lscpu
[2025-10-13 05:39:40] 2025-10-13 03:38:56,057 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:39:40] 2025-10-13 03:38:57,885 | INFO     | monitor loop #312: job 0:6840182234 is in state 'finished'
[2025-10-13 05:39:40] 2025-10-13 03:38:57,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:39:40] 2025-10-13 03:38:57,973 | INFO     | time since job start (4110s) is within the limit (172800.0s)
[2025-10-13 05:39:40] 2025-10-13 03:38:57,973 | INFO     | 4111s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 05:39:40] 2025-10-13 03:38:59,979 | INFO     | time since job start (4112s) is within the limit (172800.0s)
[2025-10-13 05:39:40] 2025-10-13 03:39:00,388 | INFO     | monitor loop #313: job 0:6840182234 is in state 'finished'
[2025-10-13 05:39:40] 2025-10-13 03:39:00,388 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:39:40] 2025-10-13 03:39:00,579 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 05:39:40] 2025-10-13 03:39:00,581 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2164.0037500000003
[2025-10-13 05:39:40] 2025-10-13 03:39:00,583 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840182234/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:39:40] 2025-10-13 03:39:00,583 | INFO     | extracted standard info from prmon json
[2025-10-13 05:39:40] 2025-10-13 03:39:00,584 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:39:40] 2025-10-13 03:39:00,584 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:39:40] 2025-10-13 03:39:00,584 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:39:40] 2025-10-13 03:39:00,584 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:39:40] 2025-10-13 03:39:00,585 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:39:40] 2025-10-13 03:39:00,586 | INFO     | sum of square deviations: 66959395.0
[2025-10-13 05:39:40] 2025-10-13 03:39:00,586 | INFO     | sum of deviations: -9053275807.5
[2025-10-13 05:39:40] 2025-10-13 03:39:00,586 | INFO     | mean x: 1760324755.5
[2025-10-13 05:39:40] 2025-10-13 03:39:00,586 | INFO     | mean y: 3021022.316666667
[2025-10-13 05:39:40] 2025-10-13 03:39:00,586 | INFO     | -- intersect: 238008539475.87354
[2025-10-13 05:39:40] 2025-10-13 03:39:00,586 | INFO     | intersect: 238008539475.87354
[2025-10-13 05:39:40] 2025-10-13 03:39:00,586 | INFO     | chi2: 0.1062116019372495
[2025-10-13 05:39:40] 2025-10-13 03:39:00,587 | INFO     | -- intersect: 238008539475.87354
[2025-10-13 05:39:40] 2025-10-13 03:39:00,587 | INFO     | current memory leak: -135.21 B/s (using 60 data points, chi2=0.11)
[2025-10-13 05:39:40] 2025-10-13 03:39:00,587 | INFO     | could have reported an average CPU frequency of 2556 MHz (6 samples)
[2025-10-13 05:39:40] 2025-10-13 03:39:00,587 | INFO     | ..............................
[2025-10-13 05:39:40] 2025-10-13 03:39:00,587 | INFO     | . Timing measurements:
[2025-10-13 05:39:40] 2025-10-13 03:39:00,587 | INFO     | . get job = 0 s
[2025-10-13 05:39:40] 2025-10-13 03:39:00,587 | INFO     | . initial setup = 1 s
[2025-10-13 05:39:40] 2025-10-13 03:39:00,588 | INFO     | . payload setup = 6 s
[2025-10-13 05:39:40] 2025-10-13 03:39:00,588 | INFO     | . stage-in = 0 s
[2025-10-13 05:39:40] 2025-10-13 03:39:00,588 | INFO     | . payload execution = 4081 s
[2025-10-13 05:39:40] 2025-10-13 03:39:00,588 | INFO     | . stage-out = 0 s
[2025-10-13 05:39:40] 2025-10-13 03:39:00,588 | INFO     | . log creation = 0 s
[2025-10-13 05:39:40] 2025-10-13 03:39:00,588 | INFO     | ..............................
[2025-10-13 05:39:40] 2025-10-13 03:39:00,657 | INFO     | 
[2025-10-13 05:39:40] 2025-10-13 03:39:00,657 | INFO     | job summary report
[2025-10-13 05:39:40] 2025-10-13 03:39:00,657 | INFO     | --------------------------------------------------
[2025-10-13 05:39:40] 2025-10-13 03:39:00,657 | INFO     | PanDA job id: 6840182234
[2025-10-13 05:39:40] 2025-10-13 03:39:00,657 | INFO     | task id: 46676269
[2025-10-13 05:39:40] 2025-10-13 03:39:00,658 | INFO     | errors: (none)
[2025-10-13 05:39:40] 2025-10-13 03:39:00,658 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:39:40] 2025-10-13 03:39:00,658 | INFO     | pilot state: finished 
[2025-10-13 05:39:40] 2025-10-13 03:39:00,658 | INFO     | transexitcode: 0
[2025-10-13 05:39:40] 2025-10-13 03:39:00,658 | INFO     | exeerrorcode: 0
[2025-10-13 05:39:40] 2025-10-13 03:39:00,658 | INFO     | exeerrordiag: 
[2025-10-13 05:39:40] 2025-10-13 03:39:00,658 | INFO     | exitcode: 0
[2025-10-13 05:39:40] 2025-10-13 03:39:00,658 | INFO     | exitmsg: OK
[2025-10-13 05:39:40] 2025-10-13 03:39:00,658 | INFO     | cpuconsumptiontime: 44295 s
[2025-10-13 05:39:40] 2025-10-13 03:39:00,658 | INFO     | nevents: 400
[2025-10-13 05:39:40] 2025-10-13 03:39:00,658 | INFO     | neventsw: 0
[2025-10-13 05:39:40] 2025-10-13 03:39:00,658 | INFO     | pid: 903320
[2025-10-13 05:39:40] 2025-10-13 03:39:00,659 | INFO     | pgrp: 903320
[2025-10-13 05:39:40] 2025-10-13 03:39:00,659 | INFO     | corecount: 12
[2025-10-13 05:39:40] 2025-10-13 03:39:00,659 | INFO     | event service: False
[2025-10-13 05:39:40] 2025-10-13 03:39:00,659 | INFO     | sizes: {0: 2348635, 1: 2348834, 4: 2349096, 11: 2349124, 4091: 2375126, 4093: 2384124, 4094: 2384308, 4098: 2384502}
[2025-10-13 05:39:40] 2025-10-13 03:39:00,659 | INFO     | --------------------------------------------------
[2025-10-13 05:39:40] 2025-10-13 03:39:00,659 | INFO     | 
[2025-10-13 05:39:40] 2025-10-13 03:39:00,659 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 05:39:40] 2025-10-13 03:39:00,676 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,677 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,677 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,677 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,677 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,677 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,677 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,677 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,677 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,677 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,678 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,678 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,678 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,678 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,678 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,678 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,678 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:39:40] 2025-10-13 03:39:00,678 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,678 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:39:40] 2025-10-13 03:39:00,679 | INFO     | job 6840182234 has completed (purged errors)
[2025-10-13 05:39:40] 2025-10-13 03:39:00,679 | INFO     | overall cleanup function is called
[2025-10-13 05:39:40] 2025-10-13 03:39:01,686 | INFO     | --- collectZombieJob: --- 10, [903320]
[2025-10-13 05:39:40] 2025-10-13 03:39:01,687 | INFO     | zombie collector waiting for pid 903320
[2025-10-13 05:39:40] 2025-10-13 03:39:01,687 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:39:40] 2025-10-13 03:39:01,687 | INFO     | collected zombie processes
[2025-10-13 05:39:40] 2025-10-13 03:39:01,687 | INFO     | will attempt to kill all subprocesses of pid=903320
[2025-10-13 05:39:40] 2025-10-13 03:39:01,762 | INFO     | process IDs to be killed: [903320] (in reverse order)
[2025-10-13 05:39:40] 2025-10-13 03:39:01,797 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:39:40] 2025-10-13 03:39:01,798 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:39:40] 2025-10-13 03:39:01,800 | INFO     | did not find any defunct processes belonging to 903320
[2025-10-13 05:39:40] 2025-10-13 03:39:01,802 | INFO     | did not find any defunct processes belonging to 903320
[2025-10-13 05:39:40] 2025-10-13 03:39:01,802 | INFO     | ready for new job
[2025-10-13 05:39:40] 2025-10-13 03:39:01,802 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:39:40] 2025-10-13 03:39:01,803 | INFO     | ***************************************
[2025-10-13 05:39:40] 2025-10-13 03:39:01,803 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 05:39:40] 2025-10-13 03:39:01,803 | INFO     | ***************************************
[2025-10-13 05:39:40] 2025-10-13 03:39:01,803 | INFO     | 
[2025-10-13 05:39:40] 2025-10-13 03:39:01,804 | INFO     | architecture information:
[2025-10-13 05:39:40] 2025-10-13 03:39:01,804 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:39:40] 2025-10-13 03:39:01,815 | INFO     | cat /etc/os-release:
[2025-10-13 05:39:40] NAME="CentOS Linux"
[2025-10-13 05:39:40] VERSION="7 (Core)"
[2025-10-13 05:39:40] ID="centos"
[2025-10-13 05:39:40] ID_LIKE="rhel fedora"
[2025-10-13 05:39:40] VERSION_ID="7"
[2025-10-13 05:39:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:39:40] ANSI_COLOR="0;31"
[2025-10-13 05:39:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:39:40] HOME_URL="https://www.centos.org/"
[2025-10-13 05:39:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:39:40] 
[2025-10-13 05:39:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:39:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:39:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:39:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:39:40] 
[2025-10-13 05:39:40] 2025-10-13 03:39:01,816 | INFO     | ***************************************
[2025-10-13 05:39:40] 2025-10-13 03:39:02,319 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 05:39:40] 2025-10-13 03:39:02,331 | INFO     | sufficient remaining disk space (1716963508224 B)
[2025-10-13 05:39:40] 2025-10-13 03:39:02,331 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:39:40] 2025-10-13 03:39:02,331 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:39:40] 2025-10-13 03:39:02,331 | INFO     | update_server=False
[2025-10-13 05:39:40] 2025-10-13 03:39:02,331 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:39:40] 2025-10-13 03:39:02,332 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:39:40] 2025-10-13 03:39:02,332 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:39:40] 2025-10-13 03:39:02,332 | INFO     | aborting loop
[2025-10-13 05:39:40] 2025-10-13 03:39:02,332 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:39:40] 2025-10-13 03:39:02,415 | INFO     | all payload control threads have been joined
[2025-10-13 05:39:40] 2025-10-13 03:39:02,629 | INFO     | all job control threads have been joined
[2025-10-13 05:39:40] 2025-10-13 03:39:03,156 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:39:40] 2025-10-13 03:39:03,223 | INFO     | all data control threads have been joined
[2025-10-13 05:39:40] 2025-10-13 03:39:03,337 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:03,338 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:03,338 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:03,421 | INFO     | [payload] control thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:03,634 | INFO     | [job] control thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:03,782 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:03,789 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:04,228 | INFO     | [data] control thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:04,557 | INFO     | [job] validate thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:04,563 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:04,591 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:04,612 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:04,639 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:05,161 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:06,338 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:13,031 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:39:40] 2025-10-13 03:39:14,036 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:39:40] 2025-10-13 03:39:33,153 | INFO     | PID=896025 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:39:40] 2025-10-13 03:39:33,153 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:39:40] 2025-10-13 03:39:33,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:39:40] 2025-10-13 03:39:33,154 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:39:40] 2025-10-13 03:39:33,705 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:39:40] 2025-10-13 03:39:35,784 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139678517823296)>', '<ExcThread(monitor, started 139677696780032)>']
[2025-10-13 05:39:40] 2025-10-13 03:39:36,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:39:40] 2025-10-13 03:39:36,169 | INFO     | [monitor] control thread has ended
[2025-10-13 05:39:40] 2025-10-13 03:39:40,798 | INFO     | all workflow threads have been joined
[2025-10-13 05:39:40] 2025-10-13 03:39:40,799 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:39:40] 2025-10-13 03:39:40,799 | INFO     | traces error code: 0
[2025-10-13 05:39:40] 2025-10-13 03:39:40,799 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:39:40] 2025-10-13 03:39:40,875 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:39:40] 2025-10-13 03:39:40,878 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:39:40] 2025-10-13 03:39:40,880 [wrapper] pilotpid: 896025
[2025-10-13 05:39:40] 2025-10-13 03:39:40,883 [wrapper] Pilot exit status: 0
[2025-10-13 05:39:40] 2025-10-13 03:39:40,892 [wrapper] pandaids: 6840182234
[2025-10-13 05:39:40] 2025-10-13 03:39:40,911 [wrapper] cleanup supervisor_pilot  915722 896026
[2025-10-13 05:39:40] 2025-10-13 03:39:40,913 [wrapper] Test setup, not cleaning
[2025-10-13 05:39:40] 2025-10-13 03:39:40,914 [wrapper] apfmon messages muted
[2025-10-13 05:39:40] 2025-10-13 03:39:40,916 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:39:40] 2025-10-13 03:39:40,918 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:39:40]  *** Error codes and diagnostics ***
[2025-10-13 05:39:40]     "exeErrorCode": 0,
[2025-10-13 05:39:40]     "exeErrorDiag": "",
[2025-10-13 05:39:40]     "pilotErrorCode": 0,
[2025-10-13 05:39:40]     "pilotErrorDiag": "",
[2025-10-13 05:39:40]  *** Listing of results directory ***
[2025-10-13 05:39:40] total 409444
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc    563267 Oct  7 09:02 pilot3.tar.gz
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc      5112 Oct 12 16:37 queuedata.json
[2025-10-13 05:39:40] -rwx------ 1 boinc boinc     36292 Oct 12 16:39 runpilot2-wrapper.sh
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc       100 Oct 13 04:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:39:40] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 04:30 run_atlas
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc       105 Oct 13 04:30 job.xml
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc      6251 Oct 13 04:30 init_data.xml
[2025-10-13 05:39:40] -rw-r--r-- 2 boinc boinc 219547983 Oct 13 04:30 EVNT.46676267._004354.pool.root.1
[2025-10-13 05:39:40] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:30 start_atlas.sh
[2025-10-13 05:39:40] drwxrwx--x 2 boinc boinc      4096 Oct 13 04:30 shared
[2025-10-13 05:39:40] -rw-r--r-- 2 boinc boinc    576715 Oct 13 04:30 input.tar.gz
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:30 boinc_lockfile
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc      2549 Oct 13 04:30 pandaJob.out
[2025-10-13 05:39:40] -rw------- 1 boinc boinc    974373 Oct 13 04:30 agis_schedconf.cvmfs.json
[2025-10-13 05:39:40] -rw------- 1 boinc boinc   1560580 Oct 13 04:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:39:40] drwx------ 4 boinc boinc      4096 Oct 13 04:30 pilot3
[2025-10-13 05:39:40] -rw------- 1 boinc boinc 193819174 Oct 13 05:38 HITS.46676269._081084.pool.root.1
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc       529 Oct 13 05:38 boinc_task_state.xml
[2025-10-13 05:39:40] -rw------- 1 boinc boinc      1027 Oct 13 05:38 memory_monitor_summary.json
[2025-10-13 05:39:40] -rw------- 1 boinc boinc    393007 Oct 13 05:38 log.46676269._081084.job.log.tgz.1
[2025-10-13 05:39:40] -rw------- 1 boinc boinc        95 Oct 13 05:38 pilot_heartbeat.json
[2025-10-13 05:39:40] -rw------- 1 boinc boinc      7793 Oct 13 05:39 heartbeat.json
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc      8192 Oct 13 05:39 boinc_mmap_file
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc        27 Oct 13 05:39 wrapper_checkpoint.txt
[2025-10-13 05:39:40] -rw------- 1 boinc boinc      4821 Oct 13 05:39 pilotlog.txt
[2025-10-13 05:39:40] -rw------- 1 boinc boinc    605362 Oct 13 05:39 log.46676269._081084.job.log.1
[2025-10-13 05:39:40] -rw------- 1 boinc boinc       357 Oct 13 05:39 output.list
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc       620 Oct 13 05:39 runtime_log
[2025-10-13 05:39:40] -rw------- 1 boinc boinc   1013760 Oct 13 05:39 result.tar.gz
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc      8727 Oct 13 05:39 runtime_log.err
[2025-10-13 05:39:40] -rw------- 1 boinc boinc       656 Oct 13 05:39 JrgKDmPPCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNHkNDmfnh35m.diag
[2025-10-13 05:39:40] -rw-r--r-- 1 boinc boinc     21952 Oct 13 05:39 stderr.txt
[2025-10-13 05:39:40] HITS file was successfully produced:
[2025-10-13 05:39:40] -rw------- 1 boinc boinc 193819174 Oct 13 05:38 shared/HITS.pool.root.1
[2025-10-13 05:39:40]  *** Contents of shared directory: ***
[2025-10-13 05:39:40] total 405264
[2025-10-13 05:39:40] -rw-r--r-- 2 boinc boinc 219547983 Oct 13 04:30 ATLAS.root_0
[2025-10-13 05:39:40] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:30 start_atlas.sh
[2025-10-13 05:39:40] -rw-r--r-- 2 boinc boinc    576715 Oct 13 04:30 input.tar.gz
[2025-10-13 05:39:40] -rw------- 1 boinc boinc 193819174 Oct 13 05:38 HITS.pool.root.1
[2025-10-13 05:39:40] -rw------- 1 boinc boinc   1013760 Oct 13 05:39 result.tar.gz
05:39:42 (892264): run_atlas exited; CPU time 44307.227569
05:39:42 (892264): called boinc_finish(0)

</stderr_txt>
]]>

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