Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:41:18 (21979): wrapper (7.7.26015): starting
17:41:18 (21979): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 17:41:18] Arguments: --nthreads 8
[2025-10-12 17:41:18] Threads: 8
[2025-10-12 17:41:18] Checking for CVMFS
[2025-10-12 17:41:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:41:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:41:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:41:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:41:18] 2.11.2.0 4697 53418 117976 151638 1 188 13529012 18432000 1789 130560 0 49468467 99.976 2415221 39632 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 17:41:18] CVMFS is ok
[2025-10-12 17:41:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:41:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:41:18] Further information can be found at the LHC@home message board.
[2025-10-12 17:41:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:41:18] Checking for apptainer binary...
[2025-10-12 17:41:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:41:18] Running /usr/bin/apptainer --version
[2025-10-12 17:41:18] apptainer version 1.3.2-1.el7
[2025-10-12 17:41:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:41:19] c-206-21.aglt2.org
[2025-10-12 17:41:19] apptainer works
[2025-10-12 17:41:19] Set ATHENA_PROC_NUMBER=8
[2025-10-12 17:41:19] Set ATHENA_CORE_NUMBER=8
[2025-10-12 17:41:19] Starting ATLAS job with PandaID=6840748835
[2025-10-12 17:41:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:45:52]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:45:52] 2025-10-13 00:44:52,053 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 20:45:52] 2025-10-13 00:44:52,056 | INFO     | fitting pss+swap vs Time
[2025-10-12 20:45:52] 2025-10-13 00:44:52,056 | INFO     | sum of square deviations: 1808350185.0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,057 | INFO     | sum of deviations: 19313647766.499992
[2025-10-12 20:45:52] 2025-10-13 00:44:52,057 | INFO     | mean x: 1760310771.5
[2025-10-12 20:45:52] 2025-10-13 00:44:52,057 | INFO     | mean y: 2478066.5944444444
[2025-10-12 20:45:52] 2025-10-13 00:44:52,057 | INFO     | -- intersect: -18798096336.712765
[2025-10-12 20:45:52] 2025-10-13 00:44:52,058 | INFO     | intersect: -18798096336.712765
[2025-10-12 20:45:52] 2025-10-13 00:44:52,058 | INFO     | chi2: 1.2751549693331856
[2025-10-12 20:45:52] 2025-10-13 00:44:52,058 | INFO     | sum of square deviations: 1661798600.0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,059 | INFO     | sum of deviations: 18555464401.0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,059 | INFO     | mean x: 1760310619.0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,059 | INFO     | mean y: 2477277.3485714286
[2025-10-12 20:45:52] 2025-10-13 00:44:52,059 | INFO     | -- intersect: -19652961730.45705
[2025-10-12 20:45:52] 2025-10-13 00:44:52,059 | INFO     | intersect: -19652961730.45705
[2025-10-12 20:45:52] 2025-10-13 00:44:52,060 | INFO     | chi2: 1.2760791008968377
[2025-10-12 20:45:52] 2025-10-13 00:44:52,060 | INFO     | current chi2=1.2760791008968377 (change=-0.07247209836270913 %)
[2025-10-12 20:45:52] 2025-10-13 00:44:52,060 | INFO     | right removable region: 174
[2025-10-12 20:45:52] 2025-10-13 00:44:52,060 | INFO     | sum of square deviations: 1661798600.0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,061 | INFO     | sum of deviations: -4894140897.999999
[2025-10-12 20:45:52] 2025-10-13 00:44:52,061 | INFO     | mean x: 1760310924.0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,061 | INFO     | mean y: 2502936.205714286
[2025-10-12 20:45:52] 2025-10-13 00:44:52,061 | INFO     | -- intersect: 5186771166.0288515
[2025-10-12 20:45:52] 2025-10-13 00:44:52,061 | INFO     | intersect: 5186771166.0288515
[2025-10-12 20:45:52] 2025-10-13 00:44:52,062 | INFO     | chi2: 0.040122010306028896
[2025-10-12 20:45:52] 2025-10-13 00:44:52,062 | INFO     | current chi2=0.040122010306028896 (change=96.85355809521647 %)
[2025-10-12 20:45:52] 2025-10-13 00:44:52,062 | INFO     | sum of square deviations: 1523386702.5
[2025-10-12 20:45:52] 2025-10-13 00:44:52,063 | INFO     | sum of deviations: -5041361043.0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,063 | INFO     | mean x: 1760311076.5
[2025-10-12 20:45:52] 2025-10-13 00:44:52,063 | INFO     | mean y: 2503053.717647059
[2025-10-12 20:45:52] 2025-10-13 00:44:52,063 | INFO     | -- intersect: 5827920638.146439
[2025-10-12 20:45:52] 2025-10-13 00:44:52,063 | INFO     | intersect: 5827920638.146439
[2025-10-12 20:45:52] 2025-10-13 00:44:52,063 | INFO     | chi2: 0.028288157190237667
[2025-10-12 20:45:52] 2025-10-13 00:44:52,063 | INFO     | current chi2=0.028288157190237667 (change=29.4946664574607 %)
[2025-10-12 20:45:52] 2025-10-13 00:44:52,064 | INFO     | sum of square deviations: 1392881930.0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,064 | INFO     | sum of deviations: -2528146341.9999995
[2025-10-12 20:45:52] 2025-10-13 00:44:52,065 | INFO     | mean x: 1760311229.0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,065 | INFO     | mean y: 2500113.624242424
[2025-10-12 20:45:52] 2025-10-13 00:44:52,065 | INFO     | -- intersect: 3197547948.280173
[2025-10-12 20:45:52] 2025-10-13 00:44:52,065 | INFO     | intersect: 3197547948.280173
[2025-10-12 20:45:52] 2025-10-13 00:44:52,065 | INFO     | chi2: 0.02265550590122358
[2025-10-12 20:45:52] 2025-10-13 00:44:52,065 | INFO     | current chi2=0.02265550590122358 (change=19.911693968378867 %)
[2025-10-12 20:45:52] 2025-10-13 00:44:52,065 | INFO     | left removable region: 30
[2025-10-12 20:45:52] 2025-10-13 00:44:52,066 | INFO     | sum of square deviations: 925859220.0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,066 | INFO     | sum of deviations: 2525356995.0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,066 | INFO     | mean x: 1760311503.5
[2025-10-12 20:45:52] 2025-10-13 00:44:52,066 | INFO     | mean y: 2492721.25
[2025-10-12 20:45:52] 2025-10-13 00:44:52,066 | INFO     | -- intersect: -4798901348.94427
[2025-10-12 20:45:52] 2025-10-13 00:44:52,067 | INFO     | intersect: -4798901348.94427
[2025-10-12 20:45:52] 2025-10-13 00:44:52,067 | INFO     | chi2: 4.5903525091567196e-05
[2025-10-12 20:45:52] 2025-10-13 00:44:52,067 | INFO     | -- intersect: -4798901348.94427
[2025-10-12 20:45:52] 2025-10-13 00:44:52,067 | INFO     | current memory leak: 2.73 B/s (using 144 data points, chi2=0.00)
[2025-10-12 20:45:52] 2025-10-13 00:44:52,067 | INFO     | could have reported an average CPU frequency of 2401 MHz (9 samples)
[2025-10-12 20:45:52] 2025-10-13 00:44:52,068 | INFO     | ..............................
[2025-10-12 20:45:52] 2025-10-13 00:44:52,068 | INFO     | . Timing measurements:
[2025-10-12 20:45:52] 2025-10-13 00:44:52,068 | INFO     | . get job = 0 s
[2025-10-12 20:45:52] 2025-10-13 00:44:52,068 | INFO     | . initial setup = 2 s
[2025-10-12 20:45:52] 2025-10-13 00:44:52,068 | INFO     | . payload setup = 4 s
[2025-10-12 20:45:52] 2025-10-13 00:44:52,068 | INFO     | . stage-in = 0 s
[2025-10-12 20:45:52] 2025-10-13 00:44:52,068 | INFO     | . payload execution = 10972 s
[2025-10-12 20:45:52] 2025-10-13 00:44:52,068 | INFO     | . stage-out = 1 s
[2025-10-12 20:45:52] 2025-10-13 00:44:52,068 | INFO     | . log creation = 0 s
[2025-10-12 20:45:52] 2025-10-13 00:44:52,068 | INFO     | ..............................
[2025-10-12 20:45:52] 2025-10-13 00:44:52,613 | INFO     | 
[2025-10-12 20:45:52] 2025-10-13 00:44:52,614 | INFO     | job summary report
[2025-10-12 20:45:52] 2025-10-13 00:44:52,614 | INFO     | --------------------------------------------------
[2025-10-12 20:45:52] 2025-10-13 00:44:52,614 | INFO     | PanDA job id: 6840748835
[2025-10-12 20:45:52] 2025-10-13 00:44:52,614 | INFO     | task id: 46676269
[2025-10-12 20:45:52] 2025-10-13 00:44:52,615 | INFO     | errors: (none)
[2025-10-12 20:45:52] 2025-10-13 00:44:52,615 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:45:52] 2025-10-13 00:44:52,615 | INFO     | pilot state: finished 
[2025-10-12 20:45:52] 2025-10-13 00:44:52,615 | INFO     | transexitcode: 0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,615 | INFO     | exeerrorcode: 0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,615 | INFO     | exeerrordiag: 
[2025-10-12 20:45:52] 2025-10-13 00:44:52,616 | INFO     | exitcode: 0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,616 | INFO     | exitmsg: OK
[2025-10-12 20:45:52] 2025-10-13 00:44:52,616 | INFO     | cpuconsumptiontime: 83172 s
[2025-10-12 20:45:52] 2025-10-13 00:44:52,616 | INFO     | nevents: 400
[2025-10-12 20:45:52] 2025-10-13 00:44:52,616 | INFO     | neventsw: 0
[2025-10-12 20:45:52] 2025-10-13 00:44:52,616 | INFO     | pid: 724
[2025-10-12 20:45:52] 2025-10-13 00:44:52,617 | INFO     | pgrp: 724
[2025-10-12 20:45:52] 2025-10-13 00:44:52,617 | INFO     | corecount: 8
[2025-10-12 20:45:52] 2025-10-13 00:44:52,617 | INFO     | event service: False
[2025-10-12 20:45:52] 2025-10-13 00:44:52,617 | INFO     | sizes: {0: 2348807, 3: 2349069, 11: 2349097, 10980: 2378225, 10983: 2387279, 10988: 2387481}
[2025-10-12 20:45:52] 2025-10-13 00:44:52,617 | INFO     | --------------------------------------------------
[2025-10-12 20:45:52] 2025-10-13 00:44:52,618 | INFO     | 
[2025-10-12 20:45:52] 2025-10-13 00:44:52,618 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 20:45:52] 2025-10-13 00:44:52,631 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,631 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,631 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,632 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,632 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,632 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,632 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,632 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,632 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,632 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,632 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,632 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,633 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,633 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,633 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,633 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,633 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,633 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:45:52] 2025-10-13 00:44:52,633 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,633 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:45:52] 2025-10-13 00:44:52,634 | INFO     | job 6840748835 has completed (purged errors)
[2025-10-12 20:45:52] 2025-10-13 00:44:52,634 | INFO     | overall cleanup function is called
[2025-10-12 20:45:52] 2025-10-13 00:44:53,640 | INFO     | --- collectZombieJob: --- 10, [724]
[2025-10-12 20:45:52] 2025-10-13 00:44:53,641 | INFO     | zombie collector waiting for pid 724
[2025-10-12 20:45:52] 2025-10-13 00:44:53,641 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:45:52] 2025-10-13 00:44:53,641 | INFO     | collected zombie processes
[2025-10-12 20:45:52] 2025-10-13 00:44:53,641 | INFO     | will attempt to kill all subprocesses of pid=724
[2025-10-12 20:45:52] 2025-10-13 00:44:53,756 | INFO     | process IDs to be killed: [724] (in reverse order)
[2025-10-12 20:45:52] 2025-10-13 00:44:53,796 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:45:52] 2025-10-13 00:44:53,796 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:45:52] 2025-10-13 00:44:53,799 | INFO     | did not find any defunct processes belonging to 724
[2025-10-12 20:45:52] 2025-10-13 00:44:53,801 | INFO     | did not find any defunct processes belonging to 724
[2025-10-12 20:45:52] 2025-10-13 00:44:53,802 | INFO     | ready for new job
[2025-10-12 20:45:52] 2025-10-13 00:44:53,802 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:45:52] 2025-10-13 00:44:53,803 | INFO     | ***************************************
[2025-10-12 20:45:52] 2025-10-13 00:44:53,803 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:45:52] 2025-10-13 00:44:53,804 | INFO     | ***************************************
[2025-10-12 20:45:52] 2025-10-13 00:44:53,804 | INFO     | 
[2025-10-12 20:45:52] 2025-10-13 00:44:53,804 | INFO     | architecture information:
[2025-10-12 20:45:52] 2025-10-13 00:44:53,805 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:45:52] 2025-10-13 00:44:53,815 | INFO     | cat /etc/os-release:
[2025-10-12 20:45:52] NAME="CentOS Linux"
[2025-10-12 20:45:52] VERSION="7 (Core)"
[2025-10-12 20:45:52] ID="centos"
[2025-10-12 20:45:52] ID_LIKE="rhel fedora"
[2025-10-12 20:45:52] VERSION_ID="7"
[2025-10-12 20:45:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:45:52] ANSI_COLOR="0;31"
[2025-10-12 20:45:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:45:52] HOME_URL="https://www.centos.org/"
[2025-10-12 20:45:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:45:52] 
[2025-10-12 20:45:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:45:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:45:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:45:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:45:52] 
[2025-10-12 20:45:52] 2025-10-13 00:44:53,815 | INFO     | ***************************************
[2025-10-12 20:45:52] 2025-10-13 00:44:54,318 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 20:45:52] 2025-10-13 00:44:54,329 | INFO     | sufficient remaining disk space (27945598976 B)
[2025-10-12 20:45:52] 2025-10-13 00:44:54,329 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:45:52] 2025-10-13 00:44:54,329 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:45:52] 2025-10-13 00:44:54,329 | INFO     | update_server=False
[2025-10-12 20:45:52] 2025-10-13 00:44:54,329 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:45:52] 2025-10-13 00:44:54,469 | INFO     | all data control threads have been joined
[2025-10-12 20:45:52] 2025-10-13 00:44:54,719 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 20:45:52] 2025-10-13 00:44:54,719 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 20:45:52] 2025-10-13 00:44:54,719 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:45:52] 2025-10-13 00:44:54,720 | INFO     | will abort loop
[2025-10-12 20:45:52] 2025-10-13 00:44:54,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:45:52] 2025-10-13 00:44:55,099 | INFO     | all payload control threads have been joined
[2025-10-12 20:45:52] 2025-10-13 00:44:55,335 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:55,474 | INFO     | [data] control thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:55,513 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:55,654 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:55,725 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:55,746 | INFO     | all job control threads have been joined
[2025-10-12 20:45:52] 2025-10-13 00:44:55,978 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:56,011 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:56,104 | INFO     | [payload] control thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:56,112 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:56,116 | INFO     | [job] validate thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:56,139 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:56,432 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:56,751 | INFO     | [job] control thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:56,947 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:44:57,185 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:45:52] 2025-10-13 00:44:57,543 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:45:52] 2025-10-13 00:44:58,191 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:45:01,549 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:45:52] 2025-10-13 00:45:25,137 | INFO     | PID=26417 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 20:45:52] 2025-10-13 00:45:25,137 | INFO     | .. there are 3 such processes running
[2025-10-12 20:45:52] 2025-10-13 00:45:25,138 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:45:52] 2025-10-13 00:45:25,138 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:45:52] 2025-10-13 00:45:25,138 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:45:52] 2025-10-13 00:45:47,181 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:45:52] 2025-10-13 00:45:47,188 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139903109470016)>', '<ExcThread(monitor, started 139902805055232)>']
[2025-10-12 20:45:52] 2025-10-13 00:45:47,238 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:45:52] 2025-10-13 00:45:47,239 | INFO     | [monitor] control thread has ended
[2025-10-12 20:45:52] 2025-10-13 00:45:52,214 | INFO     | all workflow threads have been joined
[2025-10-12 20:45:52] 2025-10-13 00:45:52,214 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:45:52] 2025-10-13 00:45:52,214 | INFO     | traces error code: 0
[2025-10-12 20:45:52] 2025-10-13 00:45:52,214 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:45:52] 2025-10-13 00:45:52,300 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:45:52] 2025-10-13 00:45:52,303 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:45:52] 2025-10-13 00:45:52,306 [wrapper] pilotpid: 26417
[2025-10-12 20:45:52] 2025-10-13 00:45:52,308 [wrapper] Pilot exit status: 0
[2025-10-12 20:45:52] 2025-10-13 00:45:52,317 [wrapper] pandaids: 6840748835
[2025-10-12 20:45:52] 2025-10-13 00:45:52,345 [wrapper] cleanup supervisor_pilot 26097 26418
[2025-10-12 20:45:52] 2025-10-13 00:45:52,347 [wrapper] Test setup, not cleaning
[2025-10-12 20:45:52] 2025-10-13 00:45:52,350 [wrapper] apfmon messages muted
[2025-10-12 20:45:52] 2025-10-13 00:45:52,352 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:45:52] 2025-10-13 00:45:52,355 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:45:52]  *** Error codes and diagnostics ***
[2025-10-12 20:45:52]     "exeErrorCode": 0,
[2025-10-12 20:45:52]     "exeErrorDiag": "",
[2025-10-12 20:45:52]     "pilotErrorCode": 0,
[2025-10-12 20:45:52]     "pilotErrorDiag": "",
[2025-10-12 20:45:52]  *** Listing of results directory ***
[2025-10-12 20:45:52] total 415380
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 16:08 pilot3.tar.gz
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 16:12 queuedata.json
[2025-10-12 20:45:52] -rwx------ 1 boincer umatlas     36292 Oct 12 16:12 runpilot2-wrapper.sh
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas       100 Oct 12 17:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:45:52] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 17:41 run_atlas
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas       105 Oct 12 17:41 job.xml
[2025-10-12 20:45:52] -rw-r--r-- 2 boincer umatlas 222402437 Oct 12 17:41 EVNT.46676267._002201.pool.root.1
[2025-10-12 20:45:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:41 start_atlas.sh
[2025-10-12 20:45:52] drwxrwx--x 2 boincer umatlas      4096 Oct 12 17:41 shared
[2025-10-12 20:45:52] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 17:41 input.tar.gz
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas         0 Oct 12 17:41 boinc_lockfile
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 17:41 pandaJob.out
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas    975528 Oct 12 17:41 agis_schedconf.cvmfs.json
[2025-10-12 20:45:52] drwx------ 5 boincer umatlas      4096 Oct 12 17:41 pilot3
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 20:37 init_data.xml
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas 195147828 Oct 12 20:44 HITS.46676269._088401.pool.root.1
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas       531 Oct 12 20:44 boinc_task_state.xml
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas        95 Oct 12 20:44 pilot_heartbeat.json
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas      1052 Oct 12 20:44 memory_monitor_summary.json
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas   1560580 Oct 12 20:44 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas    411266 Oct 12 20:44 log.46676269._088401.job.log.tgz.1
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas      7853 Oct 12 20:44 heartbeat.json
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 20:45 boinc_mmap_file
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas        28 Oct 12 20:45 wrapper_checkpoint.txt
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas      5007 Oct 12 20:45 pilotlog.txt
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas   1537815 Oct 12 20:45 log.46676269._088401.job.log.1
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas       357 Oct 12 20:45 output.list
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas       620 Oct 12 20:45 runtime_log
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas   1966080 Oct 12 20:45 result.tar.gz
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 20:45 runtime_log.err
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas       661 Oct 12 20:45 EJoMDmybHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzOlNDmMLvNgm.diag
[2025-10-12 20:45:52] -rw-r--r-- 1 boincer umatlas     20858 Oct 12 20:45 stderr.txt
[2025-10-12 20:45:52] HITS file was successfully produced:
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas 195147828 Oct 12 20:44 shared/HITS.pool.root.1
[2025-10-12 20:45:52]  *** Contents of shared directory: ***
[2025-10-12 20:45:52] total 410268
[2025-10-12 20:45:52] -rw-r--r-- 2 boincer umatlas 222402437 Oct 12 17:41 ATLAS.root_0
[2025-10-12 20:45:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:41 start_atlas.sh
[2025-10-12 20:45:52] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 17:41 input.tar.gz
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas 195147828 Oct 12 20:44 HITS.pool.root.1
[2025-10-12 20:45:52] -rw------- 1 boincer umatlas   1966080 Oct 12 20:45 result.tar.gz
20:45:53 (21979): run_atlas exited; CPU time 83322.229068
20:45:53 (21979): called boinc_finish(0)

</stderr_txt>
]]>

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