Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:37:03 (30576): wrapper (7.7.26015): starting
17:37:03 (30576): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 17:37:03] Arguments: --nthreads 8
[2025-10-12 17:37:03] Threads: 8
[2025-10-12 17:37:03] Checking for CVMFS
[2025-10-12 17:37:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:37:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:37:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:37:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:37:03] 2.11.2.0 5524 53433 125248 151638 3 188 12681936 18432000 1833 130560 0 47896032 99.975 2387177 39737 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 17:37:03] CVMFS is ok
[2025-10-12 17:37:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:37:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:37:03] Further information can be found at the LHC@home message board.
[2025-10-12 17:37:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:37:03] Checking for apptainer binary...
[2025-10-12 17:37:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:37:03] Running /usr/bin/apptainer --version
[2025-10-12 17:37:03] apptainer version 1.3.2-1.el7
[2025-10-12 17:37:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:37:04] c-206-5.aglt2.org
[2025-10-12 17:37:04] apptainer works
[2025-10-12 17:37:04] Set ATHENA_PROC_NUMBER=8
[2025-10-12 17:37:04] Set ATHENA_CORE_NUMBER=8
[2025-10-12 17:37:04] Starting ATLAS job with PandaID=6840531136
[2025-10-12 17:37:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:39:39]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:39:39] 2025-10-13 00:38:32,955 | INFO     | intersect: 3880882042.4470067
[2025-10-12 20:39:39] 2025-10-13 00:38:32,955 | INFO     | chi2: 0.014867333659230562
[2025-10-12 20:39:39] 2025-10-13 00:38:32,955 | INFO     | current chi2=0.014867333659230562 (change=60.00025569989974 %)
[2025-10-12 20:39:39] 2025-10-13 00:38:32,956 | INFO     | sum of square deviations: 1342841922.0
[2025-10-12 20:39:39] 2025-10-13 00:38:32,956 | INFO     | sum of deviations: -908427189.000004
[2025-10-12 20:39:39] 2025-10-13 00:38:32,957 | INFO     | mean x: 1760310917.0
[2025-10-12 20:39:39] 2025-10-13 00:38:32,957 | INFO     | mean y: 2507629.9509202456
[2025-10-12 20:39:39] 2025-10-13 00:38:32,957 | INFO     | -- intersect: 1193350924.234318
[2025-10-12 20:39:39] 2025-10-13 00:38:32,957 | INFO     | intersect: 1193350924.234318
[2025-10-12 20:39:39] 2025-10-13 00:38:32,957 | INFO     | chi2: 0.009193939370603059
[2025-10-12 20:39:39] 2025-10-13 00:38:32,957 | INFO     | current chi2=0.009193939370603059 (change=38.16013293752312 %)
[2025-10-12 20:39:39] 2025-10-13 00:38:32,958 | INFO     | sum of square deviations: 1223016419.5
[2025-10-12 20:39:39] 2025-10-13 00:38:32,958 | INFO     | sum of deviations: 537493020.9999999
[2025-10-12 20:39:39] 2025-10-13 00:38:32,958 | INFO     | mean x: 1760311069.5
[2025-10-12 20:39:39] 2025-10-13 00:38:32,958 | INFO     | mean y: 2505790.582278481
[2025-10-12 20:39:39] 2025-10-13 00:38:32,959 | INFO     | -- intersect: -771118258.5797988
[2025-10-12 20:39:39] 2025-10-13 00:38:32,959 | INFO     | intersect: -771118258.5797988
[2025-10-12 20:39:39] 2025-10-13 00:38:32,959 | INFO     | chi2: 0.006507460522550866
[2025-10-12 20:39:39] 2025-10-13 00:38:32,959 | INFO     | current chi2=0.006507460522550866 (change=29.220106199982244 %)
[2025-10-12 20:39:39] 2025-10-13 00:38:32,959 | INFO     | sum of square deviations: 1110539892.0
[2025-10-12 20:39:39] 2025-10-13 00:38:32,960 | INFO     | sum of deviations: 2071008071.9999998
[2025-10-12 20:39:39] 2025-10-13 00:38:32,960 | INFO     | mean x: 1760311222.0
[2025-10-12 20:39:39] 2025-10-13 00:38:32,960 | INFO     | mean y: 2503710.790849673
[2025-10-12 20:39:39] 2025-10-13 00:38:32,960 | INFO     | -- intersect: -3280240813.9724116
[2025-10-12 20:39:39] 2025-10-13 00:38:32,960 | INFO     | intersect: -3280240813.9724116
[2025-10-12 20:39:39] 2025-10-13 00:38:32,961 | INFO     | chi2: 0.0026102237015936916
[2025-10-12 20:39:39] 2025-10-13 00:38:32,961 | INFO     | current chi2=0.0026102237015936916 (change=59.88875087988229 %)
[2025-10-12 20:39:39] 2025-10-13 00:38:32,961 | INFO     | sum of square deviations: 1005179777.0
[2025-10-12 20:39:39] 2025-10-13 00:38:32,962 | INFO     | sum of deviations: 2433319493.5
[2025-10-12 20:39:39] 2025-10-13 00:38:32,962 | INFO     | mean x: 1760311374.5
[2025-10-12 20:39:39] 2025-10-13 00:38:32,962 | INFO     | mean y: 2503209.25
[2025-10-12 20:39:39] 2025-10-13 00:38:32,962 | INFO     | -- intersect: -4258824048.033877
[2025-10-12 20:39:39] 2025-10-13 00:38:32,962 | INFO     | intersect: -4258824048.033877
[2025-10-12 20:39:39] 2025-10-13 00:38:32,962 | INFO     | chi2: 0.0004913543614989067
[2025-10-12 20:39:39] 2025-10-13 00:38:32,963 | INFO     | current chi2=0.0004913543614989067 (change=81.17577580806939 %)
[2025-10-12 20:39:39] 2025-10-13 00:38:32,963 | INFO     | sum of square deviations: 906703512.0
[2025-10-12 20:39:39] 2025-10-13 00:38:32,963 | INFO     | sum of deviations: 2044898181.0
[2025-10-12 20:39:39] 2025-10-13 00:38:32,963 | INFO     | mean x: 1760311527.0
[2025-10-12 20:39:39] 2025-10-13 00:38:32,964 | INFO     | mean y: 2503811.0
[2025-10-12 20:39:39] 2025-10-13 00:38:32,964 | INFO     | -- intersect: -3967545705.6446786
[2025-10-12 20:39:39] 2025-10-13 00:38:32,964 | INFO     | intersect: -3967545705.6446786
[2025-10-12 20:39:39] 2025-10-13 00:38:32,964 | INFO     | chi2: 0.00045044222832489155
[2025-10-12 20:39:39] 2025-10-13 00:38:32,964 | INFO     | current chi2=0.00045044222832489155 (change=8.32640073636676 %)
[2025-10-12 20:39:39] 2025-10-13 00:38:32,964 | INFO     | left removable region: 70
[2025-10-12 20:39:39] 2025-10-13 00:38:32,964 | INFO     | sum of square deviations: 329031285.5
[2025-10-12 20:39:39] 2025-10-13 00:38:32,965 | INFO     | sum of deviations: 413232391.5
[2025-10-12 20:39:39] 2025-10-13 00:38:32,965 | INFO     | mean x: 1760312411.5
[2025-10-12 20:39:39] 2025-10-13 00:38:32,965 | INFO     | mean y: 2506585.068627451
[2025-10-12 20:39:39] 2025-10-13 00:38:32,965 | INFO     | -- intersect: -2208280472.720979
[2025-10-12 20:39:39] 2025-10-13 00:38:32,965 | INFO     | intersect: -2208280472.720979
[2025-10-12 20:39:39] 2025-10-13 00:38:32,965 | INFO     | chi2: 6.539623528418704e-05
[2025-10-12 20:39:39] 2025-10-13 00:38:32,966 | INFO     | -- intersect: -2208280472.720979
[2025-10-12 20:39:39] 2025-10-13 00:38:32,966 | INFO     | current memory leak: 1.26 B/s (using 102 data points, chi2=0.00)
[2025-10-12 20:39:39] 2025-10-13 00:38:32,966 | INFO     | could have reported an average CPU frequency of 2543 MHz (9 samples)
[2025-10-12 20:39:39] 2025-10-13 00:38:32,966 | INFO     | ..............................
[2025-10-12 20:39:39] 2025-10-13 00:38:32,966 | INFO     | . Timing measurements:
[2025-10-12 20:39:39] 2025-10-13 00:38:32,966 | INFO     | . get job = 0 s
[2025-10-12 20:39:39] 2025-10-13 00:38:32,967 | INFO     | . initial setup = 2 s
[2025-10-12 20:39:39] 2025-10-13 00:38:32,967 | INFO     | . payload setup = 5 s
[2025-10-12 20:39:39] 2025-10-13 00:38:32,967 | INFO     | . stage-in = 0 s
[2025-10-12 20:39:39] 2025-10-13 00:38:32,967 | INFO     | . payload execution = 10844 s
[2025-10-12 20:39:39] 2025-10-13 00:38:32,967 | INFO     | . stage-out = 2 s
[2025-10-12 20:39:39] 2025-10-13 00:38:32,967 | INFO     | . log creation = 0 s
[2025-10-12 20:39:39] 2025-10-13 00:38:32,967 | INFO     | ..............................
[2025-10-12 20:39:39] 2025-10-13 00:38:33,107 | INFO     | 
[2025-10-12 20:39:39] 2025-10-13 00:38:33,107 | INFO     | job summary report
[2025-10-12 20:39:39] 2025-10-13 00:38:33,107 | INFO     | --------------------------------------------------
[2025-10-12 20:39:39] 2025-10-13 00:38:33,108 | INFO     | PanDA job id: 6840531136
[2025-10-12 20:39:39] 2025-10-13 00:38:33,108 | INFO     | task id: 46676269
[2025-10-12 20:39:39] 2025-10-13 00:38:33,108 | INFO     | errors: (none)
[2025-10-12 20:39:39] 2025-10-13 00:38:33,108 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:39:39] 2025-10-13 00:38:33,108 | INFO     | pilot state: finished 
[2025-10-12 20:39:39] 2025-10-13 00:38:33,108 | INFO     | transexitcode: 0
[2025-10-12 20:39:39] 2025-10-13 00:38:33,109 | INFO     | exeerrorcode: 0
[2025-10-12 20:39:39] 2025-10-13 00:38:33,109 | INFO     | exeerrordiag: 
[2025-10-12 20:39:39] 2025-10-13 00:38:33,109 | INFO     | exitcode: 0
[2025-10-12 20:39:39] 2025-10-13 00:38:33,109 | INFO     | exitmsg: OK
[2025-10-12 20:39:39] 2025-10-13 00:38:33,109 | INFO     | cpuconsumptiontime: 79530 s
[2025-10-12 20:39:39] 2025-10-13 00:38:33,109 | INFO     | nevents: 400
[2025-10-12 20:39:39] 2025-10-13 00:38:33,110 | INFO     | neventsw: 0
[2025-10-12 20:39:39] 2025-10-13 00:38:33,110 | INFO     | pid: 8383
[2025-10-12 20:39:39] 2025-10-13 00:38:33,110 | INFO     | pgrp: 8383
[2025-10-12 20:39:39] 2025-10-13 00:38:33,110 | INFO     | corecount: 8
[2025-10-12 20:39:39] 2025-10-13 00:38:33,110 | INFO     | event service: False
[2025-10-12 20:39:39] 2025-10-13 00:38:33,111 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 12: 2349175, 10853: 2378131, 10857: 2387129, 10859: 2387313, 10862: 2387571}
[2025-10-12 20:39:39] 2025-10-13 00:38:33,111 | INFO     | --------------------------------------------------
[2025-10-12 20:39:39] 2025-10-13 00:38:33,111 | INFO     | 
[2025-10-12 20:39:39] 2025-10-13 00:38:33,111 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 20:39:39] 2025-10-13 00:38:33,133 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,133 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,133 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,134 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,134 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,134 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,134 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,134 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,134 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,135 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,135 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,135 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,135 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,135 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,135 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,136 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,136 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,136 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:39:39] 2025-10-13 00:38:33,136 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,136 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:39:39] 2025-10-13 00:38:33,136 | INFO     | job 6840531136 has completed (purged errors)
[2025-10-12 20:39:39] 2025-10-13 00:38:33,137 | INFO     | overall cleanup function is called
[2025-10-12 20:39:39] 2025-10-13 00:38:34,145 | INFO     | --- collectZombieJob: --- 10, [8383]
[2025-10-12 20:39:39] 2025-10-13 00:38:34,145 | INFO     | zombie collector waiting for pid 8383
[2025-10-12 20:39:39] 2025-10-13 00:38:34,145 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:39:39] 2025-10-13 00:38:34,145 | INFO     | collected zombie processes
[2025-10-12 20:39:39] 2025-10-13 00:38:34,145 | INFO     | will attempt to kill all subprocesses of pid=8383
[2025-10-12 20:39:39] 2025-10-13 00:38:34,321 | INFO     | process IDs to be killed: [8383] (in reverse order)
[2025-10-12 20:39:39] 2025-10-13 00:38:34,379 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:39:39] 2025-10-13 00:38:34,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:39:39] 2025-10-13 00:38:34,385 | INFO     | did not find any defunct processes belonging to 8383
[2025-10-12 20:39:39] 2025-10-13 00:38:34,390 | INFO     | did not find any defunct processes belonging to 8383
[2025-10-12 20:39:39] 2025-10-13 00:38:34,390 | INFO     | ready for new job
[2025-10-12 20:39:39] 2025-10-13 00:38:34,390 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:39:39] 2025-10-13 00:38:34,392 | INFO     | ***************************************
[2025-10-12 20:39:39] 2025-10-13 00:38:34,393 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:39:39] 2025-10-13 00:38:34,393 | INFO     | ***************************************
[2025-10-12 20:39:39] 2025-10-13 00:38:34,393 | INFO     | 
[2025-10-12 20:39:39] 2025-10-13 00:38:34,394 | INFO     | architecture information:
[2025-10-12 20:39:39] 2025-10-13 00:38:34,395 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:39:39] 2025-10-13 00:38:34,409 | INFO     | cat /etc/os-release:
[2025-10-12 20:39:39] NAME="CentOS Linux"
[2025-10-12 20:39:39] VERSION="7 (Core)"
[2025-10-12 20:39:39] ID="centos"
[2025-10-12 20:39:39] ID_LIKE="rhel fedora"
[2025-10-12 20:39:39] VERSION_ID="7"
[2025-10-12 20:39:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:39:39] ANSI_COLOR="0;31"
[2025-10-12 20:39:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:39:39] HOME_URL="https://www.centos.org/"
[2025-10-12 20:39:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:39:39] 
[2025-10-12 20:39:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:39:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:39:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:39:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:39:39] 
[2025-10-12 20:39:39] 2025-10-13 00:38:34,410 | INFO     | ***************************************
[2025-10-12 20:39:39] 2025-10-13 00:38:34,913 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 20:39:39] 2025-10-13 00:38:34,930 | INFO     | sufficient remaining disk space (28094496768 B)
[2025-10-12 20:39:39] 2025-10-13 00:38:34,930 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:39:39] 2025-10-13 00:38:34,931 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:39:39] 2025-10-13 00:38:34,931 | INFO     | update_server=False
[2025-10-12 20:39:39] 2025-10-13 00:38:34,931 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:39:39] 2025-10-13 00:38:34,931 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:39:39] 2025-10-13 00:38:34,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:39:39] 2025-10-13 00:38:34,932 | INFO     | aborting loop
[2025-10-12 20:39:39] 2025-10-13 00:38:35,030 | INFO     | all data control threads have been joined
[2025-10-12 20:39:39] 2025-10-13 00:38:35,063 | INFO     | all payload control threads have been joined
[2025-10-12 20:39:39] 2025-10-13 00:38:35,470 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:39:39] 2025-10-13 00:38:35,937 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:35,937 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:35,938 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:36,036 | INFO     | [data] control thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:36,068 | INFO     | [payload] control thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:36,112 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:36,156 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:39:39] 2025-10-13 00:38:36,279 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:36,363 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:36,390 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:36,480 | INFO     | all job control threads have been joined
[2025-10-12 20:39:39] 2025-10-13 00:38:36,967 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:37,264 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:37,410 | INFO     | [job] validate thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:37,485 | INFO     | [job] control thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:38,159 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:39,476 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:38:45,740 | INFO     | job.realtimelogging is not enabled
[2025-10-12 20:39:39] 2025-10-13 00:38:46,746 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:39:39] 2025-10-13 00:39:05,996 | INFO     | PID=1923 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 20:39:39] 2025-10-13 00:39:05,996 | INFO     | .. there are 3 such processes running
[2025-10-12 20:39:39] 2025-10-13 00:39:05,997 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:39:39] 2025-10-13 00:39:05,997 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:39:39] 2025-10-13 00:39:05,997 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:39:39] 2025-10-13 00:39:32,726 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:39:39] 2025-10-13 00:39:34,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139761984022336)>', '<ExcThread(monitor, started 139761238923008)>']
[2025-10-12 20:39:39] 2025-10-13 00:39:35,136 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:39:39] 2025-10-13 00:39:35,136 | INFO     | [monitor] control thread has ended
[2025-10-12 20:39:39] 2025-10-13 00:39:39,646 | INFO     | all workflow threads have been joined
[2025-10-12 20:39:39] 2025-10-13 00:39:39,646 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:39:39] 2025-10-13 00:39:39,646 | INFO     | traces error code: 0
[2025-10-12 20:39:39] 2025-10-13 00:39:39,647 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:39:39] 2025-10-13 00:39:39,738 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:39:39] 2025-10-13 00:39:39,741 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:39:39] 2025-10-13 00:39:39,743 [wrapper] pilotpid: 1923
[2025-10-12 20:39:39] 2025-10-13 00:39:39,745 [wrapper] Pilot exit status: 0
[2025-10-12 20:39:39] 2025-10-13 00:39:39,753 [wrapper] pandaids: 6840531136
[2025-10-12 20:39:39] 2025-10-13 00:39:39,782 [wrapper] cleanup supervisor_pilot  4928 1924
[2025-10-12 20:39:39] 2025-10-13 00:39:39,785 [wrapper] Test setup, not cleaning
[2025-10-12 20:39:39] 2025-10-13 00:39:39,787 [wrapper] apfmon messages muted
[2025-10-12 20:39:39] 2025-10-13 00:39:39,789 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:39:39] 2025-10-13 00:39:39,792 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:39:39]  *** Error codes and diagnostics ***
[2025-10-12 20:39:39]     "exeErrorCode": 0,
[2025-10-12 20:39:39]     "exeErrorDiag": "",
[2025-10-12 20:39:39]     "pilotErrorCode": 0,
[2025-10-12 20:39:39]     "pilotErrorDiag": "",
[2025-10-12 20:39:39]  *** Listing of results directory ***
[2025-10-12 20:39:39] total 411516
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 13:57 pilot3.tar.gz
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 14:02 queuedata.json
[2025-10-12 20:39:39] -rwx------ 1 boincer umatlas     36292 Oct 12 14:03 runpilot2-wrapper.sh
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas       100 Oct 12 17:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:39:39] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 17:37 run_atlas
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas       105 Oct 12 17:37 job.xml
[2025-10-12 20:39:39] -rw-r--r-- 2 boincer umatlas 220953595 Oct 12 17:37 EVNT.46676267._004383.pool.root.1
[2025-10-12 20:39:39] drwxrwx--x 2 boincer umatlas      4096 Oct 12 17:37 shared
[2025-10-12 20:39:39] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 17:37 input.tar.gz
[2025-10-12 20:39:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:37 start_atlas.sh
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas         0 Oct 12 17:37 boinc_lockfile
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 17:37 pandaJob.out
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas    975528 Oct 12 17:37 agis_schedconf.cvmfs.json
[2025-10-12 20:39:39] drwx------ 5 boincer umatlas      4096 Oct 12 17:37 pilot3
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 20:36 init_data.xml
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas 192645756 Oct 12 20:37 HITS.46676269._085578.pool.root.1
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas       531 Oct 12 20:38 boinc_task_state.xml
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas      1052 Oct 12 20:38 memory_monitor_summary.json
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas   1560580 Oct 12 20:38 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas    409982 Oct 12 20:38 log.46676269._085578.job.log.tgz.1
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas      7851 Oct 12 20:38 heartbeat.json
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas        95 Oct 12 20:39 pilot_heartbeat.json
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 20:39 boinc_mmap_file
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas        28 Oct 12 20:39 wrapper_checkpoint.txt
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas      4892 Oct 12 20:39 pilotlog.txt
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas   1532794 Oct 12 20:39 log.46676269._085578.job.log.1
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas       357 Oct 12 20:39 output.list
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas       620 Oct 12 20:39 runtime_log
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas   1966080 Oct 12 20:39 result.tar.gz
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas      8699 Oct 12 20:39 runtime_log.err
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas       660 Oct 12 20:39 GQFMDmHbFS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm7cUMDmKGDOzn.diag
[2025-10-12 20:39:39] -rw-r--r-- 1 boincer umatlas     20905 Oct 12 20:39 stderr.txt
[2025-10-12 20:39:39] HITS file was successfully produced:
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas 192645756 Oct 12 20:37 shared/HITS.pool.root.1
[2025-10-12 20:39:39]  *** Contents of shared directory: ***
[2025-10-12 20:39:39] total 406408
[2025-10-12 20:39:39] -rw-r--r-- 2 boincer umatlas 220953595 Oct 12 17:37 ATLAS.root_0
[2025-10-12 20:39:39] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 17:37 input.tar.gz
[2025-10-12 20:39:39] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:37 start_atlas.sh
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas 192645756 Oct 12 20:37 HITS.pool.root.1
[2025-10-12 20:39:39] -rw------- 1 boincer umatlas   1966080 Oct 12 20:39 result.tar.gz
20:39:41 (30576): run_atlas exited; CPU time 79658.949850
20:39:41 (30576): called boinc_finish(0)

</stderr_txt>
]]>

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