Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:06:03 (3408849): wrapper (7.7.26015): starting
08:06:03 (3408849): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 08:06:03] Arguments: --nthreads 3
[2025-10-13 08:06:03] Threads: 3
[2025-10-13 08:06:03] Checking for CVMFS
[2025-10-13 08:06:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:06:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:06:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:06:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:06:03] 2.9.2.0 1859496 5043 83900 151650 3 57 29785627 36864000 0 130560 0 4069383 99.991 177131 823 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 08:06:03] CVMFS is ok
[2025-10-13 08:06:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:06:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:06:03] Further information can be found at the LHC@home message board.
[2025-10-13 08:06:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:06:03] Checking for apptainer binary...
[2025-10-13 08:06:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:06:03] Running /usr/bin/apptainer --version
[2025-10-13 08:06:03] apptainer version 1.4.1-1.1
[2025-10-13 08:06:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:06:03] atlasA228b
[2025-10-13 08:06:03] apptainer works
[2025-10-13 08:06:03] Set ATHENA_PROC_NUMBER=3
[2025-10-13 08:06:03] Set ATHENA_CORE_NUMBER=3
[2025-10-13 08:06:03] Starting ATLAS job with PandaID=6840531974
[2025-10-13 08:06:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:29:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | job 6840531974 has completed (purged errors)
[2025-10-13 09:29:21] 2025-10-13 07:28:47,204 | INFO     | overall cleanup function is called
[2025-10-13 09:29:21] 2025-10-13 07:28:48,211 | INFO     | --- collectZombieJob: --- 10, [3419001]
[2025-10-13 09:29:21] 2025-10-13 07:28:48,211 | INFO     | zombie collector waiting for pid 3419001
[2025-10-13 09:29:21] 2025-10-13 07:28:48,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:29:21] 2025-10-13 07:28:48,211 | INFO     | collected zombie processes
[2025-10-13 09:29:21] 2025-10-13 07:28:48,212 | INFO     | will attempt to kill all subprocesses of pid=3419001
[2025-10-13 09:29:21] 2025-10-13 07:28:48,257 | INFO     | process IDs to be killed: [3419001] (in reverse order)
[2025-10-13 09:29:21] 2025-10-13 07:28:48,284 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:29:21] 2025-10-13 07:28:48,285 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:29:21] 2025-10-13 07:28:48,286 | INFO     | did not find any defunct processes belonging to 3419001
[2025-10-13 09:29:21] 2025-10-13 07:28:48,287 | INFO     | did not find any defunct processes belonging to 3419001
[2025-10-13 09:29:21] 2025-10-13 07:28:48,287 | INFO     | ready for new job
[2025-10-13 09:29:21] 2025-10-13 07:28:48,287 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:29:21] 2025-10-13 07:28:48,288 | INFO     | ***************************************
[2025-10-13 09:29:21] 2025-10-13 07:28:48,288 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:29:21] 2025-10-13 07:28:48,288 | INFO     | ***************************************
[2025-10-13 09:29:21] 2025-10-13 07:28:48,288 | INFO     | 
[2025-10-13 09:29:21] 2025-10-13 07:28:48,288 | INFO     | architecture information:
[2025-10-13 09:29:21] 2025-10-13 07:28:48,288 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:29:21] 2025-10-13 07:28:48,297 | INFO     | cat /etc/os-release:
[2025-10-13 09:29:21] NAME="CentOS Linux"
[2025-10-13 09:29:21] VERSION="7 (Core)"
[2025-10-13 09:29:21] ID="centos"
[2025-10-13 09:29:21] ID_LIKE="rhel fedora"
[2025-10-13 09:29:21] VERSION_ID="7"
[2025-10-13 09:29:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:29:21] ANSI_COLOR="0;31"
[2025-10-13 09:29:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:29:21] HOME_URL="https://www.centos.org/"
[2025-10-13 09:29:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:29:21] 
[2025-10-13 09:29:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:29:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:29:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:29:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:29:21] 
[2025-10-13 09:29:21] 2025-10-13 07:28:48,297 | INFO     | ***************************************
[2025-10-13 09:29:21] 2025-10-13 07:28:48,801 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 09:29:21] 2025-10-13 07:28:48,814 | INFO     | sufficient remaining disk space (274776195072 B)
[2025-10-13 09:29:21] 2025-10-13 07:28:48,814 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:29:21] 2025-10-13 07:28:48,814 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:29:21] 2025-10-13 07:28:48,814 | INFO     | update_server=False
[2025-10-13 09:29:21] 2025-10-13 07:28:48,814 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:29:21] 2025-10-13 07:28:48,814 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:29:21] 2025-10-13 07:28:48,848 | INFO     | all payload control threads have been joined
[2025-10-13 09:29:21] 2025-10-13 07:28:48,855 | INFO     | all job control threads have been joined
[2025-10-13 09:29:21] 2025-10-13 07:28:49,259 | INFO     | all data control threads have been joined
[2025-10-13 09:29:21] 2025-10-13 07:28:49,284 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:29:21] 2025-10-13 07:28:49,285 | INFO     | aborting loop
[2025-10-13 09:29:21] 2025-10-13 07:28:49,463 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:29:21] 2025-10-13 07:28:49,820 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:49,820 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:49,854 | INFO     | [payload] control thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:49,861 | INFO     | [job] control thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:50,095 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:50,150 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:50,157 | INFO     | [job] validate thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:50,172 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:50,265 | INFO     | [data] control thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:50,290 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:50,403 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:50,431 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:50,696 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:50,977 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:51,469 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:28:51,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:29:21] 2025-10-13 07:28:55,998 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:29:21] 2025-10-13 07:29:15,299 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:29:21] 2025-10-13 07:29:16,238 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140090100889408)>', '<ExcThread(monitor, started 140088872789760)>']
[2025-10-13 09:29:21] 2025-10-13 07:29:19,775 | INFO     | PID=3412564 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:29:21] 2025-10-13 07:29:19,775 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:29:21] 2025-10-13 07:29:19,775 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:29:21] 2025-10-13 07:29:19,775 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:29:21] 2025-10-13 07:29:19,775 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:29:21] 2025-10-13 07:29:19,775 | INFO     | [monitor] control thread has ended
[2025-10-13 09:29:21] 2025-10-13 07:29:21,263 | INFO     | all workflow threads have been joined
[2025-10-13 09:29:21] 2025-10-13 07:29:21,264 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:29:21] 2025-10-13 07:29:21,264 | INFO     | traces error code: 0
[2025-10-13 09:29:21] 2025-10-13 07:29:21,264 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:29:21] 2025-10-13 07:29:21,315 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:29:21] 2025-10-13 07:29:21,318 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:29:21] 2025-10-13 07:29:21,320 [wrapper] pilotpid: 3412564
[2025-10-13 09:29:21] 2025-10-13 07:29:21,323 [wrapper] Pilot exit status: 0
[2025-10-13 09:29:21] 2025-10-13 07:29:21,331 [wrapper] pandaids: 6840531974
[2025-10-13 09:29:21] 2025-10-13 07:29:21,348 [wrapper] cleanup supervisor_pilot 3430775 3412565
[2025-10-13 09:29:21] 2025-10-13 07:29:21,351 [wrapper] Test setup, not cleaning
[2025-10-13 09:29:21] 2025-10-13 07:29:21,353 [wrapper] apfmon messages muted
[2025-10-13 09:29:21] 2025-10-13 07:29:21,356 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:29:21] 2025-10-13 07:29:21,358 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:29:21]  *** Error codes and diagnostics ***
[2025-10-13 09:29:21]     "exeErrorCode": 0,
[2025-10-13 09:29:21]     "exeErrorDiag": "",
[2025-10-13 09:29:21]     "pilotErrorCode": 0,
[2025-10-13 09:29:21]     "pilotErrorDiag": "",
[2025-10-13 09:29:21]  *** Listing of results directory ***
[2025-10-13 09:29:21] total 415912
[2025-10-13 09:29:21] -rwx------ 1 boinc boinc     36292 Oct 12 20:20 runpilot2-wrapper.sh
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:20 pilot3.tar.gz
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc      5112 Oct 12 20:20 queuedata.json
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:29:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:06 run_atlas
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:06 job.xml
[2025-10-13 09:29:21] -rw-r--r-- 2 boinc boinc 223525208 Oct 13 08:06 EVNT.46676267._004399.pool.root.1
[2025-10-13 09:29:21] -rw-r--r-- 2 boinc boinc    569680 Oct 13 08:06 input.tar.gz
[2025-10-13 09:29:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:06 start_atlas.sh
[2025-10-13 09:29:21] drwxrwx--x 2 boinc boinc      4096 Oct 13 08:06 shared
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:06 boinc_setup_complete
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc      6449 Oct 13 08:06 init_data.xml
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:06 boinc_lockfile
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc      2550 Oct 13 08:06 pandaJob.out
[2025-10-13 09:29:21] -rw------- 1 boinc boinc    973230 Oct 13 08:06 agis_schedconf.cvmfs.json
[2025-10-13 09:29:21] -rw------- 1 boinc boinc   1560580 Oct 13 08:06 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:29:21] drwx------ 5 boinc boinc      4096 Oct 13 08:06 pilot3
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc       529 Oct 13 09:28 boinc_task_state.xml
[2025-10-13 09:29:21] -rw------- 1 boinc boinc 196485577 Oct 13 09:28 HITS.46676269._085995.pool.root.1
[2025-10-13 09:29:21] -rw------- 1 boinc boinc        95 Oct 13 09:28 pilot_heartbeat.json
[2025-10-13 09:29:21] -rw------- 1 boinc boinc      1013 Oct 13 09:28 memory_monitor_summary.json
[2025-10-13 09:29:21] -rw------- 1 boinc boinc    268532 Oct 13 09:28 log.46676269._085995.job.log.tgz.1
[2025-10-13 09:29:21] -rw------- 1 boinc boinc      7759 Oct 13 09:28 heartbeat.json
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc        27 Oct 13 09:28 wrapper_checkpoint.txt
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc      8192 Oct 13 09:28 boinc_mmap_file
[2025-10-13 09:29:21] -rw------- 1 boinc boinc      4752 Oct 13 09:29 pilotlog.txt
[2025-10-13 09:29:21] -rw------- 1 boinc boinc    727833 Oct 13 09:29 log.46676269._085995.job.log.1
[2025-10-13 09:29:21] -rw------- 1 boinc boinc       357 Oct 13 09:29 output.list
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc       620 Oct 13 09:29 runtime_log
[2025-10-13 09:29:21] -rw------- 1 boinc boinc   1013760 Oct 13 09:29 result.tar.gz
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc      8797 Oct 13 09:29 runtime_log.err
[2025-10-13 09:29:21] -rw------- 1 boinc boinc       662 Oct 13 09:29 o1kKDmSrFS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmw1kNDmBpHs7n.diag
[2025-10-13 09:29:21] -rw-r--r-- 1 boinc boinc     12250 Oct 13 09:29 stderr.txt
[2025-10-13 09:29:21] HITS file was successfully produced:
[2025-10-13 09:29:21] -rw------- 1 boinc boinc 196485577 Oct 13 09:28 shared/HITS.pool.root.1
[2025-10-13 09:29:21]  *** Contents of shared directory: ***
[2025-10-13 09:29:21] total 411748
[2025-10-13 09:29:21] -rw-r--r-- 2 boinc boinc 223525208 Oct 13 08:06 ATLAS.root_0
[2025-10-13 09:29:21] -rw-r--r-- 2 boinc boinc    569680 Oct 13 08:06 input.tar.gz
[2025-10-13 09:29:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:06 start_atlas.sh
[2025-10-13 09:29:21] -rw------- 1 boinc boinc 196485577 Oct 13 09:28 HITS.pool.root.1
[2025-10-13 09:29:21] -rw------- 1 boinc boinc   1013760 Oct 13 09:29 result.tar.gz
09:29:23 (3408849): run_atlas exited; CPU time 14205.449973
09:29:23 (3408849): called boinc_finish(0)

</stderr_txt>
]]>

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