Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
03:38:00 (215539): wrapper (7.7.26015): starting
03:38:00 (215539): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 03:38:00] Arguments: --nthreads 12
[2025-10-13 03:38:00] Threads: 12
[2025-10-13 03:38:00] Checking for CVMFS
[2025-10-13 03:38:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:38:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:38:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:38:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:38:00] 2.13.2.0 177871 26 45024 151647 1 62 2454820 4096000 922 130560 0 105207 99.990 2765 909 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 03:38:00] CVMFS is ok
[2025-10-13 03:38:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:38:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:38:00] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 03:38:00] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 03:38:00] Further information can be found at the LHC@home message board.
[2025-10-13 03:38:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:38:00] Checking for apptainer binary...
[2025-10-13 03:38:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:38:00] Running /usr/bin/apptainer --version
[2025-10-13 03:38:00] apptainer version 1.4.3
[2025-10-13 03:38:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:38:00] test-run
[2025-10-13 03:38:00] apptainer works
[2025-10-13 03:38:00] Set ATHENA_PROC_NUMBER=12
[2025-10-13 03:38:00] Set ATHENA_CORE_NUMBER=12
[2025-10-13 03:38:00] Starting ATLAS job with PandaID=6840715276
[2025-10-13 03:38:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 04:05:16]  *** The last 200 lines of the pilot log: ***
[2025-10-13 04:05:16]  scope=mc23_13p6TeV
[2025-10-13 04:05:16]  status=None
[2025-10-13 04:05:16]  status_code=0
[2025-10-13 04:05:16]  storage_token=
[2025-10-13 04:05:16]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6840715276/log.46676269._088228.job.log.tgz.1
[2025-10-13 04:05:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/80/log.46676269._088228.job.log.tgz.1
[2025-10-13 04:05:16]  workdir=None
[2025-10-13 04:05:16] ]
[2025-10-13 04:05:16] 2025-10-13 04:04:26,183 | INFO     | transferring file log.46676269._088228.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6840715276/log.46676269._088228.job.log.tgz.1 to /var/lib/boinc
[2025-10-13 04:05:16] 2025-10-13 04:04:26,183 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6840715276/log.46676269._088228.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.466762
[2025-10-13 04:05:16] 2025-10-13 04:04:26,189 | INFO     | adding to output.list: log.46676269._088228.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/80/log.46676269._088228.job.log.tg
[2025-10-13 04:05:16] 2025-10-13 04:04:26,189 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 04:05:16] 2025-10-13 04:04:26,189 | INFO     | summary of transferred files:
[2025-10-13 04:05:16] 2025-10-13 04:04:26,189 | INFO     |  -- lfn=log.46676269._088228.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 04:05:16] 2025-10-13 04:04:26,189 | INFO     | stage-out finished correctly
[2025-10-13 04:05:16] 2025-10-13 04:04:26,435 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 04:05:16] 2025-10-13 04:04:26,598 | INFO     | monitor loop #125: job 0:6840715276 is in state 'finished'
[2025-10-13 04:05:16] 2025-10-13 04:04:26,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:05:16] 2025-10-13 04:04:27,688 | INFO     | time since job start (1579s) is within the limit (172800.0s)
[2025-10-13 04:05:16] 2025-10-13 04:04:28,765 | INFO     | job 6840715276 has state=finished
[2025-10-13 04:05:16] 2025-10-13 04:04:28,765 | INFO     | preparing for final server update for job 6840715276 in state='finished'
[2025-10-13 04:05:16] 2025-10-13 04:04:28,765 | INFO     | this job has now completed (state=finished)
[2025-10-13 04:05:16] 2025-10-13 04:04:28,765 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 04:05:16] 2025-10-13 04:04:28,765 | INFO     | log transfer has been attempted: DONE
[2025-10-13 04:05:16] 2025-10-13 04:04:28,765 | INFO     | job 6840715276 has finished - writing final server update
[2025-10-13 04:05:16] 2025-10-13 04:04:28,765 | INFO     | total number of processed events: 400 (read)
[2025-10-13 04:05:16] 2025-10-13 04:04:28,766 | INFO     | executing command: lscpu
[2025-10-13 04:05:16] 2025-10-13 04:04:28,773 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 04:05:16] 2025-10-13 04:04:29,101 | INFO     | monitor loop #126: job 0:6840715276 is in state 'finished'
[2025-10-13 04:05:16] 2025-10-13 04:04:29,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:05:16] 2025-10-13 04:04:29,693 | INFO     | time since job start (1581s) is within the limit (172800.0s)
[2025-10-13 04:05:16] 2025-10-13 04:04:31,604 | INFO     | monitor loop #127: job 0:6840715276 is in state 'finished'
[2025-10-13 04:05:16] 2025-10-13 04:04:31,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:05:16] 2025-10-13 04:04:31,698 | INFO     | time since job start (1583s) is within the limit (172800.0s)
[2025-10-13 04:05:16] 2025-10-13 04:04:32,572 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 04:05:16] 2025-10-13 04:04:32,572 | INFO     | found 32 cores (32 cores per socket, 1 socket) , CPU MHz: 4299.979999999998
[2025-10-13 04:05:16] 2025-10-13 04:04:32,574 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6840715276/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 04:05:16] 2025-10-13 04:04:32,574 | INFO     | extracted standard info from prmon json
[2025-10-13 04:05:16] 2025-10-13 04:04:32,574 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 04:05:16] 2025-10-13 04:04:32,574 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 04:05:16] 2025-10-13 04:04:32,574 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 04:05:16] 2025-10-13 04:04:32,574 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 04:05:16] 2025-10-13 04:04:32,574 | INFO     | fitting pss+swap vs Time
[2025-10-13 04:05:16] 2025-10-13 04:04:32,574 | INFO     | sum of square deviations: 2120970.0
[2025-10-13 04:05:16] 2025-10-13 04:04:32,574 | INFO     | sum of deviations: 108481973.0
[2025-10-13 04:05:16] 2025-10-13 04:04:32,574 | INFO     | mean x: 1760327560.0
[2025-10-13 04:05:16] 2025-10-13 04:04:32,574 | INFO     | mean y: 2887450.789473684
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | -- intersect: -90033184174.49324
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | intersect: -90033184174.49324
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | chi2: 0.0013219175439117491
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | -- intersect: -90033184174.49324
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | current memory leak: 51.15 B/s (using 19 data points, chi2=0.00)
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | ..............................
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | . Timing measurements:
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | . get job = 0 s
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | . initial setup = 2 s
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | . payload setup = 2 s
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | . stage-in = 0 s
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | . payload execution = 1558 s
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | . stage-out = 0 s
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | . log creation = 0 s
[2025-10-13 04:05:16] 2025-10-13 04:04:32,575 | INFO     | ..............................
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | 
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | job summary report
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | --------------------------------------------------
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | PanDA job id: 6840715276
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | task id: 46676269
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | errors: (none)
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | pilot state: finished 
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | transexitcode: 0
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | exeerrorcode: 0
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | exeerrordiag: 
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | exitcode: 0
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | exitmsg: OK
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | cpuconsumptiontime: 14471 s
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | nevents: 400
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | neventsw: 0
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | pid: 226040
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | pgrp: 226040
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | corecount: 12
[2025-10-13 04:05:16] 2025-10-13 04:04:32,594 | INFO     | event service: False
[2025-10-13 04:05:16] 2025-10-13 04:04:32,595 | INFO     | sizes: {0: 2348864, 2: 2349126, 11: 2349154, 1565: 2383019, 1571: 2383157}
[2025-10-13 04:05:16] 2025-10-13 04:04:32,595 | INFO     | --------------------------------------------------
[2025-10-13 04:05:16] 2025-10-13 04:04:32,595 | INFO     | 
[2025-10-13 04:05:16] 2025-10-13 04:04:32,595 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-13 04:05:16] 2025-10-13 04:04:32,602 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | job 6840715276 has completed (purged errors)
[2025-10-13 04:05:16] 2025-10-13 04:04:32,603 | INFO     | overall cleanup function is called
[2025-10-13 04:05:16] 2025-10-13 04:04:33,609 | INFO     | --- collectZombieJob: --- 10, [226040]
[2025-10-13 04:05:16] 2025-10-13 04:04:33,609 | INFO     | zombie collector waiting for pid 226040
[2025-10-13 04:05:16] 2025-10-13 04:04:33,609 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 04:05:16] 2025-10-13 04:04:33,609 | INFO     | collected zombie processes
[2025-10-13 04:05:16] 2025-10-13 04:04:33,609 | INFO     | will attempt to kill all subprocesses of pid=226040
[2025-10-13 04:05:16] 2025-10-13 04:04:33,625 | INFO     | process IDs to be killed: [226040] (in reverse order)
[2025-10-13 04:05:16] 2025-10-13 04:04:33,641 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 04:05:16] 2025-10-13 04:04:33,641 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 04:05:16] 2025-10-13 04:04:33,642 | INFO     | did not find any defunct processes belonging to 226040
[2025-10-13 04:05:16] 2025-10-13 04:04:33,643 | INFO     | did not find any defunct processes belonging to 226040
[2025-10-13 04:05:16] 2025-10-13 04:04:33,643 | INFO     | ready for new job
[2025-10-13 04:05:16] 2025-10-13 04:04:33,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 04:05:16] 2025-10-13 04:04:33,643 | INFO     | ***************************************
[2025-10-13 04:05:16] 2025-10-13 04:04:33,643 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 04:05:16] 2025-10-13 04:04:33,643 | INFO     | ***************************************
[2025-10-13 04:05:16] 2025-10-13 04:04:33,643 | INFO     | 
[2025-10-13 04:05:16] 2025-10-13 04:04:33,643 | INFO     | pilot is running in a VM
[2025-10-13 04:05:16] 2025-10-13 04:04:33,643 | INFO     | architecture information:
[2025-10-13 04:05:16] 2025-10-13 04:04:33,643 | INFO     | executing command: cat /etc/os-release
[2025-10-13 04:05:16] 2025-10-13 04:04:33,647 | INFO     | cat /etc/os-release:
[2025-10-13 04:05:16] NAME="CentOS Linux"
[2025-10-13 04:05:16] VERSION="7 (Core)"
[2025-10-13 04:05:16] ID="centos"
[2025-10-13 04:05:16] ID_LIKE="rhel fedora"
[2025-10-13 04:05:16] VERSION_ID="7"
[2025-10-13 04:05:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 04:05:16] ANSI_COLOR="0;31"
[2025-10-13 04:05:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 04:05:16] HOME_URL="https://www.centos.org/"
[2025-10-13 04:05:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 04:05:16] 
[2025-10-13 04:05:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 04:05:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 04:05:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 04:05:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 04:05:16] 
[2025-10-13 04:05:16] 2025-10-13 04:04:33,647 | INFO     | ***************************************
[2025-10-13 04:05:16] 2025-10-13 04:04:34,150 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-13 04:05:16] 2025-10-13 04:04:34,157 | INFO     | sufficient remaining disk space (25421676544 B)
[2025-10-13 04:05:16] 2025-10-13 04:04:34,157 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 04:05:16] 2025-10-13 04:04:34,157 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 04:05:16] 2025-10-13 04:04:34,157 | INFO     | update_server=False
[2025-10-13 04:05:16] 2025-10-13 04:04:34,157 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 04:05:16] 2025-10-13 04:04:34,157 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:05:16] 2025-10-13 04:04:34,217 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 04:05:16] 2025-10-13 04:04:34,830 | INFO     | all payload control threads have been joined
[2025-10-13 04:05:16] 2025-10-13 04:04:35,034 | INFO     | all data control threads have been joined
[2025-10-13 04:05:16] 2025-10-13 04:04:35,112 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:05:16] 2025-10-13 04:04:35,112 | INFO     | aborting loop
[2025-10-13 04:05:16] 2025-10-13 04:04:35,162 | INFO     | [job] retrieve thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:35,163 | INFO     | [job] queue monitor thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:35,353 | INFO     | [data] copytool_in thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:35,360 | INFO     | all job control threads have been joined
[2025-10-13 04:05:16] 2025-10-13 04:04:35,835 | INFO     | [payload] control thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:35,958 | INFO     | [payload] failed_post thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:36,000 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:36,000 | INFO     | [job] validate thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:36,039 | INFO     | [data] control thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:36,091 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:36,102 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:36,117 | INFO     | [job] job monitor thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:36,223 | INFO     | [data] copytool_out thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:36,365 | INFO     | [job] control thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:36,619 | INFO     | [payload] validate_post thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:36,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 04:05:16] 2025-10-13 04:04:40,966 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:04:44,786 | INFO     | job.realtimelogging is not enabled
[2025-10-13 04:05:16] 2025-10-13 04:04:45,791 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 04:05:16] 2025-10-13 04:05:04,777 | INFO     | PID=219395 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 04:05:16] 2025-10-13 04:05:04,777 | INFO     | .. there are 2 such processes running
[2025-10-13 04:05:16] 2025-10-13 04:05:04,777 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 04:05:16] 2025-10-13 04:05:04,777 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 04:05:16] 2025-10-13 04:05:04,777 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 04:05:16] 2025-10-13 04:05:10,311 | INFO     | [monitor] cgroup control has ended
[2025-10-13 04:05:16] 2025-10-13 04:05:11,316 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139518233339712)>', '<ExcThread(monitor, started 139517314987776)>']
[2025-10-13 04:05:16] 2025-10-13 04:05:11,813 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 04:05:16] 2025-10-13 04:05:11,813 | INFO     | [monitor] control thread has ended
[2025-10-13 04:05:16] 2025-10-13 04:05:16,341 | INFO     | all workflow threads have been joined
[2025-10-13 04:05:16] 2025-10-13 04:05:16,341 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 04:05:16] 2025-10-13 04:05:16,342 | INFO     | traces error code: 0
[2025-10-13 04:05:16] 2025-10-13 04:05:16,342 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 04:05:16] 2025-10-13 04:05:16,391 [wrapper] ==== pilot stdout END ====
[2025-10-13 04:05:16] 2025-10-13 04:05:16,394 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 04:05:16] 2025-10-13 04:05:16,395 [wrapper] pilotpid: 219395
[2025-10-13 04:05:16] 2025-10-13 04:05:16,396 [wrapper] Pilot exit status: 0
[2025-10-13 04:05:16] 2025-10-13 04:05:16,405 [wrapper] pandaids: 6840715276
[2025-10-13 04:05:16] 2025-10-13 04:05:16,422 [wrapper] cleanup supervisor_pilot  252404 219396
[2025-10-13 04:05:16] 2025-10-13 04:05:16,423 [wrapper] Test setup, not cleaning
[2025-10-13 04:05:16] 2025-10-13 04:05:16,424 [wrapper] apfmon messages muted
[2025-10-13 04:05:16] 2025-10-13 04:05:16,426 [wrapper] ==== wrapper stdout END ====
[2025-10-13 04:05:16] 2025-10-13 04:05:16,427 [wrapper] ==== wrapper stderr END ====
[2025-10-13 04:05:16]  *** Error codes and diagnostics ***
[2025-10-13 04:05:16]     "exeErrorCode": 0,
[2025-10-13 04:05:16]     "exeErrorDiag": "",
[2025-10-13 04:05:16]     "pilotErrorCode": 0,
[2025-10-13 04:05:16]     "pilotErrorDiag": "",
[2025-10-13 04:05:16]  *** Listing of results directory ***
[2025-10-13 04:05:16] total 408664
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc    557409 Oct 12 19:50 pilot3.tar.gz
[2025-10-13 04:05:16] -rwx------ 1 boinc boinc     36292 Oct 12 20:03 runpilot2-wrapper.sh
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc      5112 Oct 12 20:03 queuedata.json
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc       100 Oct 13 03:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 04:05:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 03:38 run_atlas
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc       105 Oct 13 03:38 job.xml
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc      6938 Oct 13 03:38 init_data.xml
[2025-10-13 04:05:16] -rw-r--r-- 2 boinc boinc 221629282 Oct 13 03:38 EVNT.46676267._004483.pool.root.1
[2025-10-13 04:05:16] -rw-r--r-- 2 boinc boinc     15120 Oct 13 03:38 start_atlas.sh
[2025-10-13 04:05:16] drwxrwx--x 2 boinc boinc      4096 Oct 13 03:38 shared
[2025-10-13 04:05:16] -rw-r--r-- 2 boinc boinc    569676 Oct 13 03:38 input.tar.gz
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc         0 Oct 13 03:38 boinc_lockfile
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc      2550 Oct 13 03:38 pandaJob.out
[2025-10-13 04:05:16] -rw------- 1 boinc boinc    974373 Oct 13 03:38 agis_schedconf.cvmfs.json
[2025-10-13 04:05:16] -rw------- 1 boinc boinc   1560580 Oct 13 03:38 agis_ddmendpoints.agis.ALL.json
[2025-10-13 04:05:16] drwx------ 5 boinc boinc      4096 Oct 13 03:38 pilot3
[2025-10-13 04:05:16] -rw------- 1 boinc boinc 191682623 Oct 13 04:04 HITS.46676269._088228.pool.root.1
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc       529 Oct 13 04:04 boinc_task_state.xml
[2025-10-13 04:05:16] -rw------- 1 boinc boinc        95 Oct 13 04:04 pilot_heartbeat.json
[2025-10-13 04:05:16] -rw------- 1 boinc boinc      1022 Oct 13 04:04 memory_monitor_summary.json
[2025-10-13 04:05:16] -rw------- 1 boinc boinc    352639 Oct 13 04:04 log.46676269._088228.job.log.tgz.1
[2025-10-13 04:05:16] -rw------- 1 boinc boinc      7733 Oct 13 04:04 heartbeat.json
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc        27 Oct 13 04:05 wrapper_checkpoint.txt
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc      8192 Oct 13 04:05 boinc_mmap_file
[2025-10-13 04:05:16] -rw------- 1 boinc boinc      4963 Oct 13 04:05 pilotlog.txt
[2025-10-13 04:05:16] -rw------- 1 boinc boinc    275761 Oct 13 04:05 log.46676269._088228.job.log.1
[2025-10-13 04:05:16] -rw------- 1 boinc boinc       357 Oct 13 04:05 output.list
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc       620 Oct 13 04:05 runtime_log
[2025-10-13 04:05:16] -rw------- 1 boinc boinc    645120 Oct 13 04:05 result.tar.gz
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc      8762 Oct 13 04:05 runtime_log.err
[2025-10-13 04:05:16] -rw------- 1 boinc boinc       640 Oct 13 04:05 RhFODmxSHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmduUMDmVQEgzn.diag
[2025-10-13 04:05:16] -rw-r--r-- 1 boinc boinc     22021 Oct 13 04:05 stderr.txt
[2025-10-13 04:05:16] HITS file was successfully produced:
[2025-10-13 04:05:16] -rw------- 1 boinc boinc 191682623 Oct 13 04:04 shared/HITS.pool.root.1
[2025-10-13 04:05:16]  *** Contents of shared directory: ***
[2025-10-13 04:05:16] total 404844
[2025-10-13 04:05:16] -rw-r--r-- 2 boinc boinc 221629282 Oct 13 03:38 ATLAS.root_0
[2025-10-13 04:05:16] -rw-r--r-- 2 boinc boinc     15120 Oct 13 03:38 start_atlas.sh
[2025-10-13 04:05:16] -rw-r--r-- 2 boinc boinc    569676 Oct 13 03:38 input.tar.gz
[2025-10-13 04:05:16] -rw------- 1 boinc boinc 191682623 Oct 13 04:04 HITS.pool.root.1
[2025-10-13 04:05:16] -rw------- 1 boinc boinc    645120 Oct 13 04:05 result.tar.gz
04:05:17 (215539): run_atlas exited; CPU time 14476.080361
04:05:17 (215539): called boinc_finish(0)

</stderr_txt>
]]>

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