Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:07:38 (3828527): wrapper (7.7.26015): starting
09:07:38 (3828527): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 09:07:38] Arguments: --nthreads 4
[2025-10-13 09:07:38] Threads: 4
[2025-10-13 09:07:38] Checking for CVMFS
[2025-10-13 09:07:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:07:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:07:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:07:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:07:38] 2.9.2.0 1695166 5450 96188 151652 0 57 28160101 36864001 0 130560 0 5579220 99.993 183179 776 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 09:07:38] CVMFS is ok
[2025-10-13 09:07:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 09:07:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 09:07:38] Further information can be found at the LHC@home message board.
[2025-10-13 09:07:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:07:38] Checking for apptainer binary...
[2025-10-13 09:07:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:07:38] Running /usr/bin/apptainer --version
[2025-10-13 09:07:38] apptainer version 1.4.1-1.1
[2025-10-13 09:07:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:07:39] magicA244a
[2025-10-13 09:07:39] apptainer works
[2025-10-13 09:07:39] Set ATHENA_PROC_NUMBER=4
[2025-10-13 09:07:39] Set ATHENA_CORE_NUMBER=4
[2025-10-13 09:07:39] Starting ATLAS job with PandaID=6839317677
[2025-10-13 09:07:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:09:55]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:09:55] 2025-10-13 08:09:19,111 | INFO     | overall cleanup function is called
[2025-10-13 10:09:55] 2025-10-13 08:09:20,117 | INFO     | --- collectZombieJob: --- 10, [3838856]
[2025-10-13 10:09:55] 2025-10-13 08:09:20,117 | INFO     | zombie collector waiting for pid 3838856
[2025-10-13 10:09:55] 2025-10-13 08:09:20,117 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 10:09:55] 2025-10-13 08:09:20,117 | INFO     | collected zombie processes
[2025-10-13 10:09:55] 2025-10-13 08:09:20,118 | INFO     | will attempt to kill all subprocesses of pid=3838856
[2025-10-13 10:09:55] 2025-10-13 08:09:20,163 | INFO     | process IDs to be killed: [3838856] (in reverse order)
[2025-10-13 10:09:55] 2025-10-13 08:09:20,190 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:09:55] 2025-10-13 08:09:20,190 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:09:55] 2025-10-13 08:09:20,191 | INFO     | did not find any defunct processes belonging to 3838856
[2025-10-13 10:09:55] 2025-10-13 08:09:20,192 | INFO     | did not find any defunct processes belonging to 3838856
[2025-10-13 10:09:55] 2025-10-13 08:09:20,192 | INFO     | ready for new job
[2025-10-13 10:09:55] 2025-10-13 08:09:20,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:09:55] 2025-10-13 08:09:20,193 | INFO     | ***************************************
[2025-10-13 10:09:55] 2025-10-13 08:09:20,193 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:09:55] 2025-10-13 08:09:20,193 | INFO     | ***************************************
[2025-10-13 10:09:55] 2025-10-13 08:09:20,193 | INFO     | 
[2025-10-13 10:09:55] 2025-10-13 08:09:20,193 | INFO     | architecture information:
[2025-10-13 10:09:55] 2025-10-13 08:09:20,194 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:09:55] 2025-10-13 08:09:20,203 | INFO     | cat /etc/os-release:
[2025-10-13 10:09:55] NAME="CentOS Linux"
[2025-10-13 10:09:55] VERSION="7 (Core)"
[2025-10-13 10:09:55] ID="centos"
[2025-10-13 10:09:55] ID_LIKE="rhel fedora"
[2025-10-13 10:09:55] VERSION_ID="7"
[2025-10-13 10:09:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:09:55] ANSI_COLOR="0;31"
[2025-10-13 10:09:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:09:55] HOME_URL="https://www.centos.org/"
[2025-10-13 10:09:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:09:55] 
[2025-10-13 10:09:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:09:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:09:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:09:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:09:55] 
[2025-10-13 10:09:55] 2025-10-13 08:09:20,203 | INFO     | ***************************************
[2025-10-13 10:09:55] 2025-10-13 08:09:20,706 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 10:09:55] 2025-10-13 08:09:20,720 | INFO     | sufficient remaining disk space (331255644160 B)
[2025-10-13 10:09:55] 2025-10-13 08:09:20,720 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:09:55] 2025-10-13 08:09:20,720 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:09:55] 2025-10-13 08:09:20,720 | INFO     | update_server=False
[2025-10-13 10:09:55] 2025-10-13 08:09:20,720 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:09:55] 2025-10-13 08:09:20,720 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:09:55] 2025-10-13 08:09:20,721 | INFO     | aborting loop
[2025-10-13 10:09:55] 2025-10-13 08:09:20,721 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:09:55] 2025-10-13 08:09:21,281 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:09:55] 2025-10-13 08:09:21,726 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:21,726 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:21,727 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:21,746 | INFO     | all data control threads have been joined
[2025-10-13 10:09:55] 2025-10-13 08:09:21,805 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:09:55] 2025-10-13 08:09:21,967 | INFO     | all payload control threads have been joined
[2025-10-13 10:09:55] 2025-10-13 08:09:22,066 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:22,359 | INFO     | all job control threads have been joined
[2025-10-13 10:09:55] 2025-10-13 08:09:22,492 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:22,752 | INFO     | [data] control thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:22,762 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:22,764 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:22,968 | INFO     | [payload] control thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:22,978 | INFO     | [job] validate thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:23,072 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:23,099 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:23,287 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:23,364 | INFO     | [job] control thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:25,812 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:31,157 | INFO     | job.realtimelogging is not enabled
[2025-10-13 10:09:55] 2025-10-13 08:09:32,163 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:09:55] 2025-10-13 08:09:49,781 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:09:55] 2025-10-13 08:09:50,714 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140637598934848)>', '<ExcThread(monitor, started 140637244462848)>']
[2025-10-13 10:09:55] 2025-10-13 08:09:50,891 | INFO     | PID=3832317 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 10:09:55] 2025-10-13 08:09:50,891 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:09:55] 2025-10-13 08:09:50,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:09:55] 2025-10-13 08:09:50,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:09:55] 2025-10-13 08:09:50,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:09:55] 2025-10-13 08:09:50,891 | INFO     | [monitor] control thread has ended
[2025-10-13 10:09:55] 2025-10-13 08:09:55,740 | INFO     | all workflow threads have been joined
[2025-10-13 10:09:55] 2025-10-13 08:09:55,740 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:09:55] 2025-10-13 08:09:55,741 | INFO     | traces error code: 0
[2025-10-13 10:09:55] 2025-10-13 08:09:55,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:09:55] 2025-10-13 08:09:55,795 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:09:55] 2025-10-13 08:09:55,798 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:09:55] 2025-10-13 08:09:55,800 [wrapper] pilotpid: 3832317
[2025-10-13 10:09:55] 2025-10-13 08:09:55,803 [wrapper] Pilot exit status: 0
[2025-10-13 10:09:55] 2025-10-13 08:09:55,810 [wrapper] pandaids: 6839317677
[2025-10-13 10:09:55] 2025-10-13 08:09:55,828 [wrapper] cleanup supervisor_pilot 3848663 3832318
[2025-10-13 10:09:55] 2025-10-13 08:09:55,831 [wrapper] Test setup, not cleaning
[2025-10-13 10:09:55] 2025-10-13 08:09:55,833 [wrapper] apfmon messages muted
[2025-10-13 10:09:55] 2025-10-13 08:09:55,836 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:09:55] 2025-10-13 08:09:55,838 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:09:55]  *** Error codes and diagnostics ***
[2025-10-13 10:09:55]     "exeErrorCode": 0,
[2025-10-13 10:09:55]     "exeErrorDiag": "",
[2025-10-13 10:09:55]     "pilotErrorCode": 0,
[2025-10-13 10:09:55]     "pilotErrorDiag": "",
[2025-10-13 10:09:55]  *** Listing of results directory ***
[2025-10-13 10:09:55] total 409744
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc    557409 Oct 12 04:56 pilot3.tar.gz
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc      5112 Oct 12 05:00 queuedata.json
[2025-10-13 10:09:55] -rwx------ 1 boinc boinc     36292 Oct 12 05:00 runpilot2-wrapper.sh
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc       100 Oct 13 09:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:09:55] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 09:07 run_atlas
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc       105 Oct 13 09:07 job.xml
[2025-10-13 10:09:55] -rw-r--r-- 2 boinc boinc 223691942 Oct 13 09:07 EVNT.46676267._003198.pool.root.1
[2025-10-13 10:09:55] drwxrwx--x 2 boinc boinc      4096 Oct 13 09:07 shared
[2025-10-13 10:09:55] -rw-r--r-- 2 boinc boinc    569678 Oct 13 09:07 input.tar.gz
[2025-10-13 10:09:55] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:07 start_atlas.sh
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:07 boinc_setup_complete
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc      6438 Oct 13 09:07 init_data.xml
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:07 boinc_lockfile
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc      2550 Oct 13 09:07 pandaJob.out
[2025-10-13 10:09:55] -rw------- 1 boinc boinc    972849 Oct 13 09:07 agis_schedconf.cvmfs.json
[2025-10-13 10:09:55] -rw------- 1 boinc boinc   1560580 Oct 13 09:07 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:09:55] drwx------ 5 boinc boinc      4096 Oct 13 09:07 pilot3
[2025-10-13 10:09:55] -rw------- 1 boinc boinc 190390614 Oct 13 10:08 HITS.46676269._069716.pool.root.1
[2025-10-13 10:09:55] -rw------- 1 boinc boinc        95 Oct 13 10:09 pilot_heartbeat.json
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc       530 Oct 13 10:09 boinc_task_state.xml
[2025-10-13 10:09:55] -rw------- 1 boinc boinc      1027 Oct 13 10:09 memory_monitor_summary.json
[2025-10-13 10:09:55] -rw------- 1 boinc boinc    246524 Oct 13 10:09 log.46676269._069716.job.log.tgz.1
[2025-10-13 10:09:55] -rw------- 1 boinc boinc      7746 Oct 13 10:09 heartbeat.json
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc      8192 Oct 13 10:09 boinc_mmap_file
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc        27 Oct 13 10:09 wrapper_checkpoint.txt
[2025-10-13 10:09:55] -rw------- 1 boinc boinc      4824 Oct 13 10:09 pilotlog.txt
[2025-10-13 10:09:55] -rw------- 1 boinc boinc    556942 Oct 13 10:09 log.46676269._069716.job.log.1
[2025-10-13 10:09:55] -rw------- 1 boinc boinc       357 Oct 13 10:09 output.list
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc       620 Oct 13 10:09 runtime_log
[2025-10-13 10:09:55] -rw------- 1 boinc boinc    819200 Oct 13 10:09 result.tar.gz
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc      8797 Oct 13 10:09 runtime_log.err
[2025-10-13 10:09:55] -rw------- 1 boinc boinc       662 Oct 13 10:09 Q8FMDmFV1R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmh3SMDmZ6ZGJo.diag
[2025-10-13 10:09:55] -rw-r--r-- 1 boinc boinc     10805 Oct 13 10:09 stderr.txt
[2025-10-13 10:09:55] HITS file was successfully produced:
[2025-10-13 10:09:55] -rw------- 1 boinc boinc 190390614 Oct 13 10:08 shared/HITS.pool.root.1
[2025-10-13 10:09:55]  *** Contents of shared directory: ***
[2025-10-13 10:09:55] total 405768
[2025-10-13 10:09:55] -rw-r--r-- 2 boinc boinc 223691942 Oct 13 09:07 ATLAS.root_0
[2025-10-13 10:09:55] -rw-r--r-- 2 boinc boinc    569678 Oct 13 09:07 input.tar.gz
[2025-10-13 10:09:55] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:07 start_atlas.sh
[2025-10-13 10:09:55] -rw------- 1 boinc boinc 190390614 Oct 13 10:08 HITS.pool.root.1
[2025-10-13 10:09:55] -rw------- 1 boinc boinc    819200 Oct 13 10:09 result.tar.gz
10:09:57 (3828527): run_atlas exited; CPU time 13827.622552
10:09:57 (3828527): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN