Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:36:34 (2296816): wrapper (7.7.26015): starting
08:36:34 (2296816): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 08:36:34] Arguments: --nthreads 4
[2025-10-13 08:36:34] Threads: 4
[2025-10-13 08:36:34] Checking for CVMFS
[2025-10-13 08:36:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:36:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:36:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:36:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:36:34] 2.9.2.0 287733 5462 98960 151652 3 9 22513327 36864001 0 130560 0 5242689 99.993 185699 886 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 08:36:34] CVMFS is ok
[2025-10-13 08:36:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:36:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:36:34] Further information can be found at the LHC@home message board.
[2025-10-13 08:36:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:36:34] Checking for apptainer binary...
[2025-10-13 08:36:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:36:34] Running /usr/bin/apptainer --version
[2025-10-13 08:36:34] apptainer version 1.4.1-1.1
[2025-10-13 08:36:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:36:34] thA373a
[2025-10-13 08:36:34] apptainer works
[2025-10-13 08:36:34] Set ATHENA_PROC_NUMBER=4
[2025-10-13 08:36:34] Set ATHENA_CORE_NUMBER=4
[2025-10-13 08:36:34] Starting ATLAS job with PandaID=6840715188
[2025-10-13 08:36:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:47:53]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:47:53] 2025-10-13 07:47:14,767 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:47:53] 2025-10-13 07:47:14,767 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:47:53] 2025-10-13 07:47:14,767 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:47:53] 2025-10-13 07:47:14,767 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:47:53] 2025-10-13 07:47:14,767 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:47:53] 2025-10-13 07:47:14,767 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:47:53] 2025-10-13 07:47:14,767 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:47:53] 2025-10-13 07:47:14,767 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:47:53] 2025-10-13 07:47:14,767 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:47:53] 2025-10-13 07:47:14,767 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:47:53] 2025-10-13 07:47:14,768 | INFO     | job 6840715188 has completed (purged errors)
[2025-10-13 09:47:53] 2025-10-13 07:47:14,768 | INFO     | overall cleanup function is called
[2025-10-13 09:47:53] 2025-10-13 07:47:15,774 | INFO     | --- collectZombieJob: --- 10, [2307176]
[2025-10-13 09:47:53] 2025-10-13 07:47:15,774 | INFO     | zombie collector waiting for pid 2307176
[2025-10-13 09:47:53] 2025-10-13 07:47:15,775 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:47:53] 2025-10-13 07:47:15,775 | INFO     | collected zombie processes
[2025-10-13 09:47:53] 2025-10-13 07:47:15,775 | INFO     | will attempt to kill all subprocesses of pid=2307176
[2025-10-13 09:47:53] 2025-10-13 07:47:15,819 | INFO     | process IDs to be killed: [2307176] (in reverse order)
[2025-10-13 09:47:53] 2025-10-13 07:47:15,852 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:47:53] 2025-10-13 07:47:15,852 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:47:53] 2025-10-13 07:47:15,854 | INFO     | did not find any defunct processes belonging to 2307176
[2025-10-13 09:47:53] 2025-10-13 07:47:15,855 | INFO     | did not find any defunct processes belonging to 2307176
[2025-10-13 09:47:53] 2025-10-13 07:47:15,855 | INFO     | ready for new job
[2025-10-13 09:47:53] 2025-10-13 07:47:15,855 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:47:53] 2025-10-13 07:47:15,856 | INFO     | ***************************************
[2025-10-13 09:47:53] 2025-10-13 07:47:15,856 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:47:53] 2025-10-13 07:47:15,856 | INFO     | ***************************************
[2025-10-13 09:47:53] 2025-10-13 07:47:15,856 | INFO     | 
[2025-10-13 09:47:53] 2025-10-13 07:47:15,856 | INFO     | architecture information:
[2025-10-13 09:47:53] 2025-10-13 07:47:15,857 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:47:53] 2025-10-13 07:47:15,871 | INFO     | cat /etc/os-release:
[2025-10-13 09:47:53] NAME="CentOS Linux"
[2025-10-13 09:47:53] VERSION="7 (Core)"
[2025-10-13 09:47:53] ID="centos"
[2025-10-13 09:47:53] ID_LIKE="rhel fedora"
[2025-10-13 09:47:53] VERSION_ID="7"
[2025-10-13 09:47:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:47:53] ANSI_COLOR="0;31"
[2025-10-13 09:47:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:47:53] HOME_URL="https://www.centos.org/"
[2025-10-13 09:47:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:47:53] 
[2025-10-13 09:47:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:47:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:47:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:47:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:47:53] 
[2025-10-13 09:47:53] 2025-10-13 07:47:15,871 | INFO     | ***************************************
[2025-10-13 09:47:53] 2025-10-13 07:47:16,374 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 09:47:53] 2025-10-13 07:47:16,392 | INFO     | sufficient remaining disk space (337261887488 B)
[2025-10-13 09:47:53] 2025-10-13 07:47:16,393 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:47:53] 2025-10-13 07:47:16,393 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:47:53] 2025-10-13 07:47:16,393 | INFO     | update_server=False
[2025-10-13 09:47:53] 2025-10-13 07:47:16,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:47:53] 2025-10-13 07:47:16,393 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 09:47:53] 2025-10-13 07:47:16,393 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:47:53] 2025-10-13 07:47:16,393 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:47:53] 2025-10-13 07:47:16,393 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:47:53] 2025-10-13 07:47:16,393 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:47:53] 2025-10-13 07:47:16,393 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:47:53] 2025-10-13 07:47:16,394 | INFO     | aborting loop
[2025-10-13 09:47:53] 2025-10-13 07:47:16,782 | INFO     | all job control threads have been joined
[2025-10-13 09:47:53] 2025-10-13 07:47:16,829 | INFO     | all data control threads have been joined
[2025-10-13 09:47:53] 2025-10-13 07:47:17,274 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:47:53] 2025-10-13 07:47:17,398 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:17,399 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:17,399 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:17,399 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:17,444 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:17,699 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:17,788 | INFO     | [job] control thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:17,835 | INFO     | [data] control thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:17,837 | INFO     | all payload control threads have been joined
[2025-10-13 09:47:53] 2025-10-13 07:47:18,007 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:18,247 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:18,520 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:18,798 | INFO     | [job] validate thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:18,843 | INFO     | [payload] control thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:19,281 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:19,576 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:47:53] 2025-10-13 07:47:23,583 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:26,506 | INFO     | job.realtimelogging is not enabled
[2025-10-13 09:47:53] 2025-10-13 07:47:27,512 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:47:53] 2025-10-13 07:47:48,002 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:47:53] 2025-10-13 07:47:48,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140085986481984)>', '<ExcThread(monitor, started 140084955297536)>']
[2025-10-13 09:47:53] 2025-10-13 07:47:48,558 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:47:53] 2025-10-13 07:47:48,558 | INFO     | [monitor] control thread has ended
[2025-10-13 09:47:53] 2025-10-13 07:47:53,407 | INFO     | all workflow threads have been joined
[2025-10-13 09:47:53] 2025-10-13 07:47:53,408 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:47:53] 2025-10-13 07:47:53,408 | INFO     | traces error code: 0
[2025-10-13 09:47:53] 2025-10-13 07:47:53,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:47:53] 2025-10-13 07:47:53,489 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:47:53] 2025-10-13 07:47:53,493 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:47:53] 2025-10-13 07:47:53,497 [wrapper] pilotpid: 2300607
[2025-10-13 09:47:53] 2025-10-13 07:47:53,501 [wrapper] Pilot exit status: 0
[2025-10-13 09:47:53] 2025-10-13 07:47:53,513 [wrapper] pandaids: 6840715188
[2025-10-13 09:47:53] 2025-10-13 07:47:53,535 [wrapper] cleanup supervisor_pilot 2316807 2300608
[2025-10-13 09:47:53] 2025-10-13 07:47:53,539 [wrapper] Test setup, not cleaning
[2025-10-13 09:47:53] 2025-10-13 07:47:53,543 [wrapper] apfmon messages muted
[2025-10-13 09:47:53] 2025-10-13 07:47:53,547 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:47:53] 2025-10-13 07:47:53,551 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:47:53]  *** Error codes and diagnostics ***
[2025-10-13 09:47:53]     "exeErrorCode": 0,
[2025-10-13 09:47:53]     "exeErrorDiag": "",
[2025-10-13 09:47:53]     "pilotErrorCode": 0,
[2025-10-13 09:47:53]     "pilotErrorDiag": "",
[2025-10-13 09:47:53]  *** Listing of results directory ***
[2025-10-13 09:47:53] total 406292
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc    557409 Oct 12 21:50 pilot3.tar.gz
[2025-10-13 09:47:53] -rwx------ 1 boinc boinc     36292 Oct 12 21:59 runpilot2-wrapper.sh
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:59 queuedata.json
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:47:53] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:36 run_atlas
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:36 job.xml
[2025-10-13 09:47:53] -rw-r--r-- 2 boinc boinc 220025496 Oct 13 08:36 EVNT.46676267._004480.pool.root.1
[2025-10-13 09:47:53] -rw-r--r-- 2 boinc boinc    569678 Oct 13 08:36 input.tar.gz
[2025-10-13 09:47:53] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:36 start_atlas.sh
[2025-10-13 09:47:53] drwxrwx--x 2 boinc boinc      4096 Oct 13 08:36 shared
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:36 boinc_setup_complete
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc      6376 Oct 13 08:36 init_data.xml
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:36 boinc_lockfile
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc      2550 Oct 13 08:36 pandaJob.out
[2025-10-13 09:47:53] -rw------- 1 boinc boinc    972849 Oct 13 08:36 agis_schedconf.cvmfs.json
[2025-10-13 09:47:53] -rw------- 1 boinc boinc   1560580 Oct 13 08:36 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:47:53] drwx------ 5 boinc boinc      4096 Oct 13 08:36 pilot3
[2025-10-13 09:47:53] -rw------- 1 boinc boinc 190357697 Oct 13 09:46 HITS.46676269._088140.pool.root.1
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc       530 Oct 13 09:46 boinc_task_state.xml
[2025-10-13 09:47:53] -rw------- 1 boinc boinc      1023 Oct 13 09:47 memory_monitor_summary.json
[2025-10-13 09:47:53] -rw------- 1 boinc boinc        95 Oct 13 09:47 pilot_heartbeat.json
[2025-10-13 09:47:53] -rw------- 1 boinc boinc    254432 Oct 13 09:47 log.46676269._088140.job.log.tgz.1
[2025-10-13 09:47:53] -rw------- 1 boinc boinc      7767 Oct 13 09:47 heartbeat.json
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc      8192 Oct 13 09:47 boinc_mmap_file
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc        27 Oct 13 09:47 wrapper_checkpoint.txt
[2025-10-13 09:47:53] -rw------- 1 boinc boinc      4628 Oct 13 09:47 pilotlog.txt
[2025-10-13 09:47:53] -rw------- 1 boinc boinc    629558 Oct 13 09:47 log.46676269._088140.job.log.1
[2025-10-13 09:47:53] -rw------- 1 boinc boinc       357 Oct 13 09:47 output.list
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc       620 Oct 13 09:47 runtime_log
[2025-10-13 09:47:53] -rw------- 1 boinc boinc    901120 Oct 13 09:47 result.tar.gz
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc      8782 Oct 13 09:47 runtime_log.err
[2025-10-13 09:47:53] -rw------- 1 boinc boinc       659 Oct 13 09:47 PgwNDm0OHS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmztUMDmHDvSNn.diag
[2025-10-13 09:47:53] -rw-r--r-- 1 boinc boinc     11843 Oct 13 09:47 stderr.txt
[2025-10-13 09:47:53] HITS file was successfully produced:
[2025-10-13 09:47:53] -rw------- 1 boinc boinc 190357697 Oct 13 09:46 shared/HITS.pool.root.1
[2025-10-13 09:47:53]  *** Contents of shared directory: ***
[2025-10-13 09:47:53] total 402236
[2025-10-13 09:47:53] -rw-r--r-- 2 boinc boinc 220025496 Oct 13 08:36 ATLAS.root_0
[2025-10-13 09:47:53] -rw-r--r-- 2 boinc boinc    569678 Oct 13 08:36 input.tar.gz
[2025-10-13 09:47:53] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:36 start_atlas.sh
[2025-10-13 09:47:53] -rw------- 1 boinc boinc 190357697 Oct 13 09:46 HITS.pool.root.1
[2025-10-13 09:47:53] -rw------- 1 boinc boinc    901120 Oct 13 09:47 result.tar.gz
09:47:54 (2296816): run_atlas exited; CPU time 15964.315774
09:47:54 (2296816): called boinc_finish(0)

</stderr_txt>
]]>

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