Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
10:49:06 (651449): wrapper (7.7.26015): starting
10:49:06 (651449): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 10:49:06] Arguments: --nthreads 12
[2025-10-13 10:49:06] Threads: 12
[2025-10-13 10:49:06] Checking for CVMFS
[2025-10-13 10:49:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:49:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:49:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:49:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:49:07] 2.11.4.0 4009 4052 138568 151654 0 188 3506943 4096001 912 130560 1 14998987 99.998 141993 501 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 10:49:07] CVMFS is ok
[2025-10-13 10:49:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:49:07] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 10:49:07] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 10:49:07] Further information can be found at the LHC@home message board.
[2025-10-13 10:49:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:49:07] Checking for apptainer binary...
[2025-10-13 10:49:07] which: no apptainer in (/home/ti-kako/.local/bin:/home/ti-kako/bin:/usr/lib64/ccache:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-13 10:49:07] apptainer is not installed, using version from CVMFS
[2025-10-13 10:49:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:49:07] sonata
[2025-10-13 10:49:07] apptainer works
[2025-10-13 10:49:07] Set ATHENA_PROC_NUMBER=12
[2025-10-13 10:49:07] Set ATHENA_CORE_NUMBER=12
[2025-10-13 10:49:07] Starting ATLAS job with PandaID=6840530536
[2025-10-13 10:49:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 11:28:26]  *** The last 200 lines of the pilot log: ***
[2025-10-13 11:28:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 11:28:26]  replicas=None
[2025-10-13 11:28:26]  scope=mc23_13p6TeV
[2025-10-13 11:28:26]  status=None
[2025-10-13 11:28:26]  status_code=0
[2025-10-13 11:28:26]  storage_token=
[2025-10-13 11:28:26]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6840530536/log.46676269._085461.job.log.tgz.1
[2025-10-13 11:28:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/35/log.46676269._085461.job.log.tgz.1
[2025-10-13 11:28:26]  workdir=None
[2025-10-13 11:28:26] ]
[2025-10-13 11:28:26] 2025-10-13 09:27:28,011 | INFO     | transferring file log.46676269._085461.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6840530536/log.46676269._085461.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 11:28:26] 2025-10-13 09:27:28,011 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6840530536/log.46676269._085461.job.log.tgz.1 /var/lib/boinc/slots/2/log.46676269._085461.job
[2025-10-13 11:28:26] 2025-10-13 09:27:28,026 | INFO     | adding to output.list: log.46676269._085461.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/35/log.46676269._085461.job.log.tg
[2025-10-13 11:28:26] 2025-10-13 09:27:28,027 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 11:28:26] 2025-10-13 09:27:28,027 | INFO     | summary of transferred files:
[2025-10-13 11:28:26] 2025-10-13 09:27:28,027 | INFO     |  -- lfn=log.46676269._085461.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 11:28:26] 2025-10-13 09:27:28,027 | INFO     | stage-out finished correctly
[2025-10-13 11:28:26] 2025-10-13 09:27:28,600 | INFO     | time since job start (2292s) is within the limit (172800.0s)
[2025-10-13 11:28:26] 2025-10-13 09:27:29,779 | INFO     | PID=655288 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 11:28:26] 2025-10-13 09:27:29,779 | INFO     | .. there are 2 such processes running
[2025-10-13 11:28:26] 2025-10-13 09:27:30,352 | INFO     | monitor loop #176: job 0:6840530536 is in state 'finished'
[2025-10-13 11:28:26] 2025-10-13 09:27:30,352 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:28:26] 2025-10-13 09:27:30,729 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 11:28:26] 2025-10-13 09:27:30,784 | INFO     | time since job start (2294s) is within the limit (172800.0s)
[2025-10-13 11:28:26] 2025-10-13 09:27:30,795 | INFO     | job 6840530536 has state=finished
[2025-10-13 11:28:26] 2025-10-13 09:27:30,796 | INFO     | preparing for final server update for job 6840530536 in state='finished'
[2025-10-13 11:28:26] 2025-10-13 09:27:30,796 | INFO     | this job has now completed (state=finished)
[2025-10-13 11:28:26] 2025-10-13 09:27:30,796 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 11:28:26] 2025-10-13 09:27:30,797 | INFO     | log transfer has been attempted: DONE
[2025-10-13 11:28:26] 2025-10-13 09:27:30,797 | INFO     | job 6840530536 has finished - writing final server update
[2025-10-13 11:28:26] 2025-10-13 09:27:30,797 | INFO     | total number of processed events: 400 (read)
[2025-10-13 11:28:26] 2025-10-13 09:27:30,799 | INFO     | executing command: lscpu
[2025-10-13 11:28:26] 2025-10-13 09:27:30,827 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 11:28:26] 2025-10-13 09:27:32,801 | INFO     | time since job start (2296s) is within the limit (172800.0s)
[2025-10-13 11:28:26] 2025-10-13 09:27:32,854 | INFO     | monitor loop #177: job 0:6840530536 is in state 'finished'
[2025-10-13 11:28:26] 2025-10-13 09:27:32,854 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:28:26] 2025-10-13 09:27:33,638 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 11:28:26] 2025-10-13 09:27:33,642 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3543.13153125
[2025-10-13 11:28:26] 2025-10-13 09:27:33,647 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6840530536/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 11:28:26] 2025-10-13 09:27:33,647 | INFO     | extracted standard info from prmon json
[2025-10-13 11:28:26] 2025-10-13 09:27:33,647 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 11:28:26] 2025-10-13 09:27:33,647 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 11:28:26] 2025-10-13 09:27:33,648 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 11:28:26] 2025-10-13 09:27:33,648 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 11:28:26] 2025-10-13 09:27:33,649 | INFO     | fitting pss+swap vs Time
[2025-10-13 11:28:26] 2025-10-13 09:27:33,649 | INFO     | sum of square deviations: 9228080.0
[2025-10-13 11:28:26] 2025-10-13 09:27:33,649 | INFO     | sum of deviations: -1700121606.0
[2025-10-13 11:28:26] 2025-10-13 09:27:33,649 | INFO     | mean x: 1760346599.0
[2025-10-13 11:28:26] 2025-10-13 09:27:33,649 | INFO     | mean y: 2827859.0
[2025-10-13 11:28:26] 2025-10-13 09:27:33,649 | INFO     | -- intersect: 324317667674.9225
[2025-10-13 11:28:26] 2025-10-13 09:27:33,649 | INFO     | intersect: 324317667674.9225
[2025-10-13 11:28:26] 2025-10-13 09:27:33,649 | INFO     | chi2: 0.016199475227485674
[2025-10-13 11:28:26] 2025-10-13 09:27:33,650 | INFO     | -- intersect: 324317667674.9225
[2025-10-13 11:28:26] 2025-10-13 09:27:33,650 | INFO     | current memory leak: -184.23 B/s (using 31 data points, chi2=0.02)
[2025-10-13 11:28:26] 2025-10-13 09:27:33,650 | INFO     | could have reported an average CPU frequency of 3571 MHz (5 samples)
[2025-10-13 11:28:26] 2025-10-13 09:27:33,650 | INFO     | ..............................
[2025-10-13 11:28:26] 2025-10-13 09:27:33,650 | INFO     | . Timing measurements:
[2025-10-13 11:28:26] 2025-10-13 09:27:33,650 | INFO     | . get job = 0 s
[2025-10-13 11:28:26] 2025-10-13 09:27:33,650 | INFO     | . initial setup = 1 s
[2025-10-13 11:28:26] 2025-10-13 09:27:33,650 | INFO     | . payload setup = 4 s
[2025-10-13 11:28:26] 2025-10-13 09:27:33,650 | INFO     | . stage-in = 0 s
[2025-10-13 11:28:26] 2025-10-13 09:27:33,650 | INFO     | . payload execution = 2267 s
[2025-10-13 11:28:26] 2025-10-13 09:27:33,650 | INFO     | . stage-out = 0 s
[2025-10-13 11:28:26] 2025-10-13 09:27:33,651 | INFO     | . log creation = 0 s
[2025-10-13 11:28:26] 2025-10-13 09:27:33,651 | INFO     | ..............................
[2025-10-13 11:28:26] 2025-10-13 09:27:33,933 | INFO     | 
[2025-10-13 11:28:26] 2025-10-13 09:27:33,933 | INFO     | job summary report
[2025-10-13 11:28:26] 2025-10-13 09:27:33,933 | INFO     | --------------------------------------------------
[2025-10-13 11:28:26] 2025-10-13 09:27:33,933 | INFO     | PanDA job id: 6840530536
[2025-10-13 11:28:26] 2025-10-13 09:27:33,933 | INFO     | task id: 46676269
[2025-10-13 11:28:26] 2025-10-13 09:27:33,933 | INFO     | errors: (none)
[2025-10-13 11:28:26] 2025-10-13 09:27:33,933 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 11:28:26] 2025-10-13 09:27:33,933 | INFO     | pilot state: finished 
[2025-10-13 11:28:26] 2025-10-13 09:27:33,933 | INFO     | transexitcode: 0
[2025-10-13 11:28:26] 2025-10-13 09:27:33,933 | INFO     | exeerrorcode: 0
[2025-10-13 11:28:26] 2025-10-13 09:27:33,933 | INFO     | exeerrordiag: 
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | exitcode: 0
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | exitmsg: OK
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | cpuconsumptiontime: 24494 s
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | nevents: 400
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | neventsw: 0
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | pid: 661944
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | pgrp: 661944
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | corecount: 12
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | event service: False
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 2274: 2374312, 2275: 2374311, 2277: 2383365, 2280: 2383549, 2283: 2383775}
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | --------------------------------------------------
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | 
[2025-10-13 11:28:26] 2025-10-13 09:27:33,934 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-13 11:28:26] 2025-10-13 09:27:33,955 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,955 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,955 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,955 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,955 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,955 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,955 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,955 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,955 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,956 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,956 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,956 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,956 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,956 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,956 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,956 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,956 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 11:28:26] 2025-10-13 09:27:33,956 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,956 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 11:28:26] 2025-10-13 09:27:33,956 | INFO     | job 6840530536 has completed (purged errors)
[2025-10-13 11:28:26] 2025-10-13 09:27:33,956 | INFO     | overall cleanup function is called
[2025-10-13 11:28:26] 2025-10-13 09:27:34,963 | INFO     | --- collectZombieJob: --- 10, [661944]
[2025-10-13 11:28:26] 2025-10-13 09:27:34,963 | INFO     | zombie collector waiting for pid 661944
[2025-10-13 11:28:26] 2025-10-13 09:27:34,963 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 11:28:26] 2025-10-13 09:27:34,964 | INFO     | collected zombie processes
[2025-10-13 11:28:26] 2025-10-13 09:27:34,964 | INFO     | will attempt to kill all subprocesses of pid=661944
[2025-10-13 11:28:26] 2025-10-13 09:27:35,130 | INFO     | process IDs to be killed: [661944] (in reverse order)
[2025-10-13 11:28:26] 2025-10-13 09:27:35,199 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 11:28:26] 2025-10-13 09:27:35,200 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 11:28:26] 2025-10-13 09:27:35,204 | INFO     | did not find any defunct processes belonging to 661944
[2025-10-13 11:28:26] 2025-10-13 09:27:35,208 | INFO     | did not find any defunct processes belonging to 661944
[2025-10-13 11:28:26] 2025-10-13 09:27:35,209 | INFO     | ready for new job
[2025-10-13 11:28:26] 2025-10-13 09:27:35,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 11:28:26] 2025-10-13 09:27:35,210 | INFO     | ***************************************
[2025-10-13 11:28:26] 2025-10-13 09:27:35,210 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 11:28:26] 2025-10-13 09:27:35,210 | INFO     | ***************************************
[2025-10-13 11:28:26] 2025-10-13 09:27:35,210 | INFO     | 
[2025-10-13 11:28:26] 2025-10-13 09:27:35,212 | INFO     | architecture information:
[2025-10-13 11:28:26] 2025-10-13 09:27:35,212 | INFO     | executing command: cat /etc/os-release
[2025-10-13 11:28:26] 2025-10-13 09:27:35,223 | INFO     | cat /etc/os-release:
[2025-10-13 11:28:26] NAME="CentOS Linux"
[2025-10-13 11:28:26] VERSION="7 (Core)"
[2025-10-13 11:28:26] ID="centos"
[2025-10-13 11:28:26] ID_LIKE="rhel fedora"
[2025-10-13 11:28:26] VERSION_ID="7"
[2025-10-13 11:28:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 11:28:26] ANSI_COLOR="0;31"
[2025-10-13 11:28:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 11:28:26] HOME_URL="https://www.centos.org/"
[2025-10-13 11:28:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 11:28:26] 
[2025-10-13 11:28:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 11:28:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 11:28:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 11:28:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 11:28:26] 
[2025-10-13 11:28:26] 2025-10-13 09:27:35,224 | INFO     | ***************************************
[2025-10-13 11:28:26] 2025-10-13 09:27:35,726 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-13 11:28:26] 2025-10-13 09:27:35,738 | INFO     | sufficient remaining disk space (965890539520 B)
[2025-10-13 11:28:26] 2025-10-13 09:27:35,739 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 11:28:26] 2025-10-13 09:27:35,739 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 11:28:26] 2025-10-13 09:27:35,739 | INFO     | update_server=False
[2025-10-13 11:28:26] 2025-10-13 09:27:35,739 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 11:28:26] 2025-10-13 09:27:36,110 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 11:28:26] 2025-10-13 09:27:36,334 | INFO     | all data control threads have been joined
[2025-10-13 11:28:26] 2025-10-13 09:27:36,362 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:28:26] 2025-10-13 09:27:36,363 | INFO     | aborting loop
[2025-10-13 11:28:26] 2025-10-13 09:27:36,553 | INFO     | all payload control threads have been joined
[2025-10-13 11:28:26] 2025-10-13 09:27:36,621 | INFO     | all job control threads have been joined
[2025-10-13 11:28:26] 2025-10-13 09:27:36,744 | INFO     | [job] retrieve thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:36,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 11:28:26] 2025-10-13 09:27:36,813 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:36,997 | INFO     | [data] copytool_in thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:37,194 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:37,340 | INFO     | [data] control thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:37,368 | INFO     | [job] job monitor thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:37,558 | INFO     | [payload] control thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:37,625 | INFO     | [job] control thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:37,711 | INFO     | [payload] failed_post thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:37,799 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:37,992 | INFO     | [job] validate thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:38,115 | INFO     | [data] copytool_out thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:38,178 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:38,301 | INFO     | [payload] validate_post thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:38,731 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:28:26] 2025-10-13 09:27:39,735 | INFO     | [job] queue monitor thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:27:40,806 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 11:28:26] 2025-10-13 09:28:06,047 | INFO     | PID=655288 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 11:28:26] 2025-10-13 09:28:06,047 | INFO     | .. there are 2 such processes running
[2025-10-13 11:28:26] 2025-10-13 09:28:06,048 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 11:28:26] 2025-10-13 09:28:06,048 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 11:28:26] 2025-10-13 09:28:06,048 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 11:28:26] 2025-10-13 09:28:20,058 | INFO     | [monitor] cgroup control has ended
[2025-10-13 11:28:26] 2025-10-13 09:28:21,308 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139957318195008)>', '<ExcThread(monitor, started 139956760581888)>']
[2025-10-13 11:28:26] 2025-10-13 09:28:22,128 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 11:28:26] 2025-10-13 09:28:22,128 | INFO     | [monitor] control thread has ended
[2025-10-13 11:28:26] 2025-10-13 09:28:26,333 | INFO     | all workflow threads have been joined
[2025-10-13 11:28:26] 2025-10-13 09:28:26,333 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 11:28:26] 2025-10-13 09:28:26,333 | INFO     | traces error code: 0
[2025-10-13 11:28:26] 2025-10-13 09:28:26,334 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 11:28:26] 2025-10-13 09:28:26,414 [wrapper] ==== pilot stdout END ====
[2025-10-13 11:28:26] 2025-10-13 09:28:26,417 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 11:28:26] 2025-10-13 09:28:26,419 [wrapper] pilotpid: 655288
[2025-10-13 11:28:26] 2025-10-13 09:28:26,423 [wrapper] Pilot exit status: 0
[2025-10-13 11:28:26] 2025-10-13 09:28:26,431 [wrapper] pandaids: 6840530536
[2025-10-13 11:28:26] 2025-10-13 09:28:26,470 [wrapper] cleanup supervisor_pilot  688468 655289
[2025-10-13 11:28:26] 2025-10-13 09:28:26,472 [wrapper] Test setup, not cleaning
[2025-10-13 11:28:26] 2025-10-13 09:28:26,474 [wrapper] apfmon messages muted
[2025-10-13 11:28:26] 2025-10-13 09:28:26,477 [wrapper] ==== wrapper stdout END ====
[2025-10-13 11:28:26] 2025-10-13 09:28:26,479 [wrapper] ==== wrapper stderr END ====
[2025-10-13 11:28:26]  *** Error codes and diagnostics ***
[2025-10-13 11:28:26]     "exeErrorCode": 0,
[2025-10-13 11:28:26]     "exeErrorDiag": "",
[2025-10-13 11:28:26]     "pilotErrorCode": 0,
[2025-10-13 11:28:26]     "pilotErrorDiag": "",
[2025-10-13 11:28:26]  *** Listing of results directory ***
[2025-10-13 11:28:26] total 412888
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako    557409 12 oct.  19:32 pilot3.tar.gz
[2025-10-13 11:28:26] -rwx------ 1 ti-kako ti-kako     36292 12 oct.  19:55 runpilot2-wrapper.sh
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako      5112 12 oct.  19:55 queuedata.json
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako       100 13 oct.  10:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 11:28:26] -rwxr-xr-x 1 ti-kako ti-kako      7986 13 oct.  10:49 run_atlas
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako       105 13 oct.  10:49 job.xml
[2025-10-13 11:28:26] -rw-r--r-- 2 ti-kako ti-kako 222460651 13 oct.  10:49 EVNT.46676267._004221.pool.root.1
[2025-10-13 11:28:26] drwxrwx--x 1 ti-kako ti-kako        76 13 oct.  10:49 shared
[2025-10-13 11:28:26] -rw-r--r-- 2 ti-kako ti-kako    569680 13 oct.  10:49 input.tar.gz
[2025-10-13 11:28:26] -rw-r--r-- 2 ti-kako ti-kako     15120 13 oct.  10:49 start_atlas.sh
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako         0 13 oct.  10:49 boinc_setup_complete
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako      8913 13 oct.  10:49 init_data.xml
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako         0 13 oct.  10:49 boinc_lockfile
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako      2550 13 oct.  10:49 pandaJob.out
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako    972857 13 oct.  10:49 agis_schedconf.cvmfs.json
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako   1560580 13 oct.  10:49 agis_ddmendpoints.agis.ALL.json
[2025-10-13 11:28:26] drwx------ 1 ti-kako ti-kako       414 13 oct.  10:49 pilot3
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako 194993417 13 oct.  11:27 HITS.46676269._085461.pool.root.1
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako      1019 13 oct.  11:27 memory_monitor_summary.json
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako    357549 13 oct.  11:27 log.46676269._085461.job.log.tgz.1
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako       529 13 oct.  11:27 boinc_task_state.xml
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako      7749 13 oct.  11:27 heartbeat.json
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako      8192 13 oct.  11:27 boinc_mmap_file
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako        27 13 oct.  11:27 wrapper_checkpoint.txt
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako        95 13 oct.  11:28 pilot_heartbeat.json
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako      4823 13 oct.  11:28 pilotlog.txt
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako    371971 13 oct.  11:28 log.46676269._085461.job.log.1
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako       357 13 oct.  11:28 output.list
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako       620 13 oct.  11:28 runtime_log
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako    747520 13 oct.  11:28 result.tar.gz
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako      8645 13 oct.  11:28 runtime_log.err
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako       638 13 oct.  11:28 obWKDm7SFS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmpbUMDmWm6tWn.diag
[2025-10-13 11:28:26] -rw-r--r-- 1 ti-kako ti-kako     22158 13 oct.  11:28 stderr.txt
[2025-10-13 11:28:26] HITS file was successfully produced:
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako 194993417 13 oct.  11:27 shared/HITS.pool.root.1
[2025-10-13 11:28:26]  *** Contents of shared directory: ***
[2025-10-13 11:28:26] total 408980
[2025-10-13 11:28:26] -rw-r--r-- 2 ti-kako ti-kako 222460651 13 oct.  10:49 ATLAS.root_0
[2025-10-13 11:28:26] -rw-r--r-- 2 ti-kako ti-kako    569680 13 oct.  10:49 input.tar.gz
[2025-10-13 11:28:26] -rw-r--r-- 2 ti-kako ti-kako     15120 13 oct.  10:49 start_atlas.sh
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako 194993417 13 oct.  11:27 HITS.pool.root.1
[2025-10-13 11:28:26] -rw------- 1 ti-kako ti-kako    747520 13 oct.  11:28 result.tar.gz
11:28:27 (651449): run_atlas exited; CPU time 24521.650422
11:28:27 (651449): called boinc_finish(0)

</stderr_txt>
]]>

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