Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:45:24 (3902868): wrapper (7.7.26015): starting
08:45:24 (3902868): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 08:45:24] Arguments: --nthreads 4
[2025-10-13 08:45:24] Threads: 4
[2025-10-13 08:45:24] Checking for CVMFS
[2025-10-13 08:45:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:45:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:45:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:45:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:45:27] 2.9.2.0 1822434 5299 95868 151652 0 57 22567266 36864001 0 130560 0 5472405 99.993 184625 732 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 08:45:27] CVMFS is ok
[2025-10-13 08:45:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:45:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:45:27] Further information can be found at the LHC@home message board.
[2025-10-13 08:45:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:45:27] Checking for apptainer binary...
[2025-10-13 08:45:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:45:27] Running /usr/bin/apptainer --version
[2025-10-13 08:45:27] apptainer version 1.4.1-1.1
[2025-10-13 08:45:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:45:27] thA315b
[2025-10-13 08:45:27] apptainer works
[2025-10-13 08:45:27] Set ATHENA_PROC_NUMBER=4
[2025-10-13 08:45:27] Set ATHENA_CORE_NUMBER=4
[2025-10-13 08:45:27] Starting ATLAS job with PandaID=6840714474
[2025-10-13 08:45:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:47:43]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:47:43] 2025-10-13 07:47:03,391 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:47:43] 2025-10-13 07:47:03,391 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:47:43] 2025-10-13 07:47:03,391 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:47:43] 2025-10-13 07:47:03,391 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:47:43] 2025-10-13 07:47:03,391 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:47:43] 2025-10-13 07:47:03,391 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:47:43] 2025-10-13 07:47:03,391 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:47:43] 2025-10-13 07:47:03,391 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:47:43] 2025-10-13 07:47:03,391 | INFO     | job 6840714474 has completed (purged errors)
[2025-10-13 09:47:43] 2025-10-13 07:47:03,391 | INFO     | overall cleanup function is called
[2025-10-13 09:47:43] 2025-10-13 07:47:04,398 | INFO     | --- collectZombieJob: --- 10, [3913226]
[2025-10-13 09:47:43] 2025-10-13 07:47:04,398 | INFO     | zombie collector waiting for pid 3913226
[2025-10-13 09:47:43] 2025-10-13 07:47:04,398 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:47:43] 2025-10-13 07:47:04,398 | INFO     | collected zombie processes
[2025-10-13 09:47:43] 2025-10-13 07:47:04,398 | INFO     | will attempt to kill all subprocesses of pid=3913226
[2025-10-13 09:47:43] 2025-10-13 07:47:04,444 | INFO     | process IDs to be killed: [3913226] (in reverse order)
[2025-10-13 09:47:43] 2025-10-13 07:47:04,470 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:47:43] 2025-10-13 07:47:04,470 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:47:43] 2025-10-13 07:47:04,472 | INFO     | did not find any defunct processes belonging to 3913226
[2025-10-13 09:47:43] 2025-10-13 07:47:04,473 | INFO     | did not find any defunct processes belonging to 3913226
[2025-10-13 09:47:43] 2025-10-13 07:47:04,473 | INFO     | ready for new job
[2025-10-13 09:47:43] 2025-10-13 07:47:04,473 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:47:43] 2025-10-13 07:47:04,474 | INFO     | ***************************************
[2025-10-13 09:47:43] 2025-10-13 07:47:04,474 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:47:43] 2025-10-13 07:47:04,474 | INFO     | ***************************************
[2025-10-13 09:47:43] 2025-10-13 07:47:04,474 | INFO     | 
[2025-10-13 09:47:43] 2025-10-13 07:47:04,474 | INFO     | architecture information:
[2025-10-13 09:47:43] 2025-10-13 07:47:04,474 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:47:43] 2025-10-13 07:47:04,484 | INFO     | cat /etc/os-release:
[2025-10-13 09:47:43] NAME="CentOS Linux"
[2025-10-13 09:47:43] VERSION="7 (Core)"
[2025-10-13 09:47:43] ID="centos"
[2025-10-13 09:47:43] ID_LIKE="rhel fedora"
[2025-10-13 09:47:43] VERSION_ID="7"
[2025-10-13 09:47:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:47:43] ANSI_COLOR="0;31"
[2025-10-13 09:47:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:47:43] HOME_URL="https://www.centos.org/"
[2025-10-13 09:47:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:47:43] 
[2025-10-13 09:47:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:47:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:47:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:47:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:47:43] 
[2025-10-13 09:47:43] 2025-10-13 07:47:04,484 | INFO     | ***************************************
[2025-10-13 09:47:43] 2025-10-13 07:47:04,987 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 09:47:43] 2025-10-13 07:47:05,000 | INFO     | sufficient remaining disk space (336976674816 B)
[2025-10-13 09:47:43] 2025-10-13 07:47:05,001 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:47:43] 2025-10-13 07:47:05,001 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:47:43] 2025-10-13 07:47:05,001 | INFO     | update_server=False
[2025-10-13 09:47:43] 2025-10-13 07:47:05,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:47:43] 2025-10-13 07:47:05,001 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:47:43] 2025-10-13 07:47:05,001 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:47:43] 2025-10-13 07:47:05,125 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:47:43] 2025-10-13 07:47:05,370 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 09:47:43] 2025-10-13 07:47:05,370 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 09:47:43] 2025-10-13 07:47:05,370 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:47:43] 2025-10-13 07:47:05,370 | INFO     | will abort loop
[2025-10-13 09:47:43] 2025-10-13 07:47:05,616 | INFO     | all job control threads have been joined
[2025-10-13 09:47:43] 2025-10-13 07:47:05,705 | INFO     | all data control threads have been joined
[2025-10-13 09:47:43] 2025-10-13 07:47:05,759 | INFO     | all payload control threads have been joined
[2025-10-13 09:47:43] 2025-10-13 07:47:06,004 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,006 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,238 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,325 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,376 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,480 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,503 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,621 | INFO     | [job] control thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,711 | INFO     | [data] control thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,717 | INFO     | [job] validate thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,765 | INFO     | [payload] control thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,797 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,798 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:06,955 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:07,007 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:09,130 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:47:43] 2025-10-13 07:47:35,007 | INFO     | PID=3906652 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:47:43] 2025-10-13 07:47:35,007 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:47:43] 2025-10-13 07:47:35,007 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:47:43] 2025-10-13 07:47:35,007 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:47:43] 2025-10-13 07:47:37,809 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:47:43] 2025-10-13 07:47:38,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140366888298304)>', '<ExcThread(monitor, started 140366527305472)>']
[2025-10-13 09:47:43] 2025-10-13 07:47:39,025 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:47:43] 2025-10-13 07:47:39,025 | INFO     | [monitor] control thread has ended
[2025-10-13 09:47:43] 2025-10-13 07:47:43,640 | INFO     | all workflow threads have been joined
[2025-10-13 09:47:43] 2025-10-13 07:47:43,640 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:47:43] 2025-10-13 07:47:43,640 | INFO     | traces error code: 0
[2025-10-13 09:47:43] 2025-10-13 07:47:43,640 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:47:43] 2025-10-13 07:47:43,694 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:47:43] 2025-10-13 07:47:43,697 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:47:43] 2025-10-13 07:47:43,700 [wrapper] pilotpid: 3906652
[2025-10-13 09:47:43] 2025-10-13 07:47:43,702 [wrapper] Pilot exit status: 0
[2025-10-13 09:47:43] 2025-10-13 07:47:43,710 [wrapper] pandaids: 6840714474
[2025-10-13 09:47:43] 2025-10-13 07:47:43,728 [wrapper] cleanup supervisor_pilot 3922952 3906653
[2025-10-13 09:47:43] 2025-10-13 07:47:43,731 [wrapper] Test setup, not cleaning
[2025-10-13 09:47:43] 2025-10-13 07:47:43,733 [wrapper] apfmon messages muted
[2025-10-13 09:47:43] 2025-10-13 07:47:43,736 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:47:43] 2025-10-13 07:47:43,738 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:47:43]  *** Error codes and diagnostics ***
[2025-10-13 09:47:43]     "exeErrorCode": 0,
[2025-10-13 09:47:43]     "exeErrorDiag": "",
[2025-10-13 09:47:43]     "pilotErrorCode": 0,
[2025-10-13 09:47:43]     "pilotErrorDiag": "",
[2025-10-13 09:47:43]  *** Listing of results directory ***
[2025-10-13 09:47:43] total 411952
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc    557409 Oct 12 21:28 pilot3.tar.gz
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:47 queuedata.json
[2025-10-13 09:47:43] -rwx------ 1 boinc boinc     36292 Oct 12 21:48 runpilot2-wrapper.sh
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:47:43] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:45 run_atlas
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:45 job.xml
[2025-10-13 09:47:43] -rw-r--r-- 2 boinc boinc 222064425 Oct 13 08:45 EVNT.46676267._004469.pool.root.1
[2025-10-13 09:47:43] -rw-r--r-- 2 boinc boinc    569681 Oct 13 08:45 input.tar.gz
[2025-10-13 09:47:43] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:45 start_atlas.sh
[2025-10-13 09:47:43] drwxrwx--x 2 boinc boinc      4096 Oct 13 08:45 shared
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:45 boinc_setup_complete
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc      6443 Oct 13 08:45 init_data.xml
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:45 boinc_lockfile
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc      2550 Oct 13 08:45 pandaJob.out
[2025-10-13 09:47:43] -rw------- 1 boinc boinc    972849 Oct 13 08:45 agis_schedconf.cvmfs.json
[2025-10-13 09:47:43] -rw------- 1 boinc boinc   1560580 Oct 13 08:45 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:47:43] drwx------ 5 boinc boinc      4096 Oct 13 08:45 pilot3
[2025-10-13 09:47:43] -rw------- 1 boinc boinc 194268776 Oct 13 09:46 HITS.46676269._087870.pool.root.1
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc       529 Oct 13 09:46 boinc_task_state.xml
[2025-10-13 09:47:43] -rw------- 1 boinc boinc        95 Oct 13 09:46 pilot_heartbeat.json
[2025-10-13 09:47:43] -rw------- 1 boinc boinc      1015 Oct 13 09:46 memory_monitor_summary.json
[2025-10-13 09:47:43] -rw------- 1 boinc boinc    252956 Oct 13 09:46 log.46676269._087870.job.log.tgz.1
[2025-10-13 09:47:43] -rw------- 1 boinc boinc      7753 Oct 13 09:47 heartbeat.json
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc        27 Oct 13 09:47 wrapper_checkpoint.txt
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc      8192 Oct 13 09:47 boinc_mmap_file
[2025-10-13 09:47:43] -rw------- 1 boinc boinc      4938 Oct 13 09:47 pilotlog.txt
[2025-10-13 09:47:43] -rw------- 1 boinc boinc    556202 Oct 13 09:47 log.46676269._087870.job.log.1
[2025-10-13 09:47:43] -rw------- 1 boinc boinc       357 Oct 13 09:47 output.list
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc       620 Oct 13 09:47 runtime_log
[2025-10-13 09:47:43] -rw------- 1 boinc boinc    829440 Oct 13 09:47 result.tar.gz
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc      8782 Oct 13 09:47 runtime_log.err
[2025-10-13 09:47:43] -rw------- 1 boinc boinc       659 Oct 13 09:47 XsJODmsEHS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8KlNDmmO5Nzn.diag
[2025-10-13 09:47:43] -rw-r--r-- 1 boinc boinc     11850 Oct 13 09:47 stderr.txt
[2025-10-13 09:47:43] HITS file was successfully produced:
[2025-10-13 09:47:43] -rw------- 1 boinc boinc 194268776 Oct 13 09:46 shared/HITS.pool.root.1
[2025-10-13 09:47:43]  *** Contents of shared directory: ***
[2025-10-13 09:47:43] total 407972
[2025-10-13 09:47:43] -rw-r--r-- 2 boinc boinc 222064425 Oct 13 08:45 ATLAS.root_0
[2025-10-13 09:47:43] -rw-r--r-- 2 boinc boinc    569681 Oct 13 08:45 input.tar.gz
[2025-10-13 09:47:43] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:45 start_atlas.sh
[2025-10-13 09:47:43] -rw------- 1 boinc boinc 194268776 Oct 13 09:46 HITS.pool.root.1
[2025-10-13 09:47:43] -rw------- 1 boinc boinc    829440 Oct 13 09:47 result.tar.gz
09:47:45 (3902868): run_atlas exited; CPU time 13782.192378
09:47:45 (3902868): called boinc_finish(0)

</stderr_txt>
]]>

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