Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:55:14 (637434): wrapper (7.7.26015): starting
02:55:14 (637434): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 02:55:14] Arguments: --nthreads 12
[2025-10-13 02:55:14] Threads: 12
[2025-10-13 02:55:14] Checking for CVMFS
[2025-10-13 02:55:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:55:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:55:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:55:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:55:14] 2.13.1.0 4007501 1821 77860 151642 2 57 3346559 4097024 0 130560 0 2143792 99.994 65409 2655 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.185.49.55:3128 1
[2025-10-13 02:55:14] CVMFS is ok
[2025-10-13 02:55:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:55:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:55:14] Further information can be found at the LHC@home message board.
[2025-10-13 02:55:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:55:14] Checking for apptainer binary...
[2025-10-13 02:55:14] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-13 02:55:14] apptainer is not installed, using version from CVMFS
[2025-10-13 02:55:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:55:14] pckelar6.cern.ch
[2025-10-13 02:55:14] apptainer works
[2025-10-13 02:55:14] Set ATHENA_PROC_NUMBER=12
[2025-10-13 02:55:14] Set ATHENA_CORE_NUMBER=12
[2025-10-13 02:55:14] Starting ATLAS job with PandaID=6840531142
[2025-10-13 02:55:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 04:02:34]  *** The last 200 lines of the pilot log: ***
[2025-10-13 04:02:34]  scope=mc23_13p6TeV
[2025-10-13 04:02:34]  status=None
[2025-10-13 04:02:34]  status_code=0
[2025-10-13 04:02:34]  storage_token=
[2025-10-13 04:02:34]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6840531142/log.46676269._085584.job.log.tgz.1
[2025-10-13 04:02:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/fb/log.46676269._085584.job.log.tgz.1
[2025-10-13 04:02:34]  workdir=None
[2025-10-13 04:02:34] ]
[2025-10-13 04:02:34] 2025-10-13 02:01:52,712 | INFO     | transferring file log.46676269._085584.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6840531142/log.46676269._085584.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 04:02:34] 2025-10-13 02:01:52,713 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6840531142/log.46676269._085584.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._085584.job
[2025-10-13 04:02:34] 2025-10-13 02:01:52,727 | INFO     | adding to output.list: log.46676269._085584.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/fb/log.46676269._085584.job.log.tg
[2025-10-13 04:02:34] 2025-10-13 02:01:52,727 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 04:02:34] 2025-10-13 02:01:52,727 | INFO     | summary of transferred files:
[2025-10-13 04:02:34] 2025-10-13 02:01:52,727 | INFO     |  -- lfn=log.46676269._085584.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 04:02:34] 2025-10-13 02:01:52,728 | INFO     | stage-out finished correctly
[2025-10-13 04:02:34] 2025-10-13 02:01:53,577 | INFO     | time since job start (3991s) is within the limit (172800.0s)
[2025-10-13 04:02:34] 2025-10-13 02:01:53,658 | INFO     | monitor loop #298: job 0:6840531142 is in state 'finished'
[2025-10-13 04:02:34] 2025-10-13 02:01:53,658 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:02:34] 2025-10-13 02:01:53,953 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 04:02:34] 2025-10-13 02:01:54,432 | INFO     | job 6840531142 has state=finished
[2025-10-13 04:02:34] 2025-10-13 02:01:54,432 | INFO     | preparing for final server update for job 6840531142 in state='finished'
[2025-10-13 04:02:34] 2025-10-13 02:01:55,013 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 04:02:34] 2025-10-13 02:01:55,014 | INFO     | this job has now completed (state=finished)
[2025-10-13 04:02:34] 2025-10-13 02:01:55,014 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 04:02:34] 2025-10-13 02:01:55,014 | INFO     | log transfer has been attempted: DONE
[2025-10-13 04:02:34] 2025-10-13 02:01:55,014 | INFO     | job 6840531142 has finished - writing final server update
[2025-10-13 04:02:34] 2025-10-13 02:01:55,014 | INFO     | total number of processed events: 400 (read)
[2025-10-13 04:02:34] 2025-10-13 02:01:55,015 | INFO     | executing command: lscpu
[2025-10-13 04:02:34] 2025-10-13 02:01:55,037 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 04:02:34] 2025-10-13 02:01:55,582 | INFO     | time since job start (3993s) is within the limit (172800.0s)
[2025-10-13 04:02:34] 2025-10-13 02:01:56,161 | INFO     | monitor loop #299: job 0:6840531142 is in state 'finished'
[2025-10-13 04:02:34] 2025-10-13 02:01:56,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:02:34] 2025-10-13 02:01:57,588 | INFO     | time since job start (3995s) is within the limit (172800.0s)
[2025-10-13 04:02:34] 2025-10-13 02:01:58,664 | INFO     | monitor loop #300: job 0:6840531142 is in state 'finished'
[2025-10-13 04:02:34] 2025-10-13 02:01:58,664 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 04:02:34] 2025-10-13 02:01:59,062 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 04:02:34] 2025-10-13 02:01:59,064 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2647.3465833333335
[2025-10-13 04:02:34] 2025-10-13 02:01:59,066 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840531142/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 04:02:34] 2025-10-13 02:01:59,067 | INFO     | extracted standard info from prmon json
[2025-10-13 04:02:34] 2025-10-13 02:01:59,067 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 04:02:34] 2025-10-13 02:01:59,067 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 04:02:34] 2025-10-13 02:01:59,067 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 04:02:34] 2025-10-13 02:01:59,068 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 04:02:34] 2025-10-13 02:01:59,069 | INFO     | fitting pss+swap vs Time
[2025-10-13 04:02:34] 2025-10-13 02:01:59,069 | INFO     | sum of square deviations: 60482994.5
[2025-10-13 04:02:34] 2025-10-13 02:01:59,069 | INFO     | sum of deviations: -5260530474.5
[2025-10-13 04:02:34] 2025-10-13 02:01:59,070 | INFO     | mean x: 1760318989.5
[2025-10-13 04:02:34] 2025-10-13 02:01:59,070 | INFO     | mean y: 2825081.9482758623
[2025-10-13 04:02:34] 2025-10-13 02:01:59,070 | INFO     | -- intersect: 153107210300.60336
[2025-10-13 04:02:34] 2025-10-13 02:01:59,070 | INFO     | intersect: 153107210300.60336
[2025-10-13 04:02:34] 2025-10-13 02:01:59,070 | INFO     | chi2: 0.1085493322503254
[2025-10-13 04:02:34] 2025-10-13 02:01:59,070 | INFO     | -- intersect: 153107210300.60336
[2025-10-13 04:02:34] 2025-10-13 02:01:59,070 | INFO     | current memory leak: -86.98 B/s (using 58 data points, chi2=0.11)
[2025-10-13 04:02:34] 2025-10-13 02:01:59,070 | INFO     | could have reported an average CPU frequency of 2579 MHz (6 samples)
[2025-10-13 04:02:34] 2025-10-13 02:01:59,071 | INFO     | ..............................
[2025-10-13 04:02:34] 2025-10-13 02:01:59,071 | INFO     | . Timing measurements:
[2025-10-13 04:02:34] 2025-10-13 02:01:59,071 | INFO     | . get job = 0 s
[2025-10-13 04:02:34] 2025-10-13 02:01:59,071 | INFO     | . initial setup = 1 s
[2025-10-13 04:02:34] 2025-10-13 02:01:59,071 | INFO     | . payload setup = 5 s
[2025-10-13 04:02:34] 2025-10-13 02:01:59,071 | INFO     | . stage-in = 0 s
[2025-10-13 04:02:34] 2025-10-13 02:01:59,071 | INFO     | . payload execution = 3966 s
[2025-10-13 04:02:34] 2025-10-13 02:01:59,071 | INFO     | . stage-out = 0 s
[2025-10-13 04:02:34] 2025-10-13 02:01:59,071 | INFO     | . log creation = 0 s
[2025-10-13 04:02:34] 2025-10-13 02:01:59,071 | INFO     | ..............................
[2025-10-13 04:02:34] 2025-10-13 02:01:59,141 | INFO     | 
[2025-10-13 04:02:34] 2025-10-13 02:01:59,141 | INFO     | job summary report
[2025-10-13 04:02:34] 2025-10-13 02:01:59,141 | INFO     | --------------------------------------------------
[2025-10-13 04:02:34] 2025-10-13 02:01:59,141 | INFO     | PanDA job id: 6840531142
[2025-10-13 04:02:34] 2025-10-13 02:01:59,141 | INFO     | task id: 46676269
[2025-10-13 04:02:34] 2025-10-13 02:01:59,141 | INFO     | errors: (none)
[2025-10-13 04:02:34] 2025-10-13 02:01:59,142 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 04:02:34] 2025-10-13 02:01:59,142 | INFO     | pilot state: finished 
[2025-10-13 04:02:34] 2025-10-13 02:01:59,142 | INFO     | transexitcode: 0
[2025-10-13 04:02:34] 2025-10-13 02:01:59,142 | INFO     | exeerrorcode: 0
[2025-10-13 04:02:34] 2025-10-13 02:01:59,142 | INFO     | exeerrordiag: 
[2025-10-13 04:02:34] 2025-10-13 02:01:59,142 | INFO     | exitcode: 0
[2025-10-13 04:02:34] 2025-10-13 02:01:59,142 | INFO     | exitmsg: OK
[2025-10-13 04:02:34] 2025-10-13 02:01:59,142 | INFO     | cpuconsumptiontime: 42818 s
[2025-10-13 04:02:34] 2025-10-13 02:01:59,142 | INFO     | nevents: 400
[2025-10-13 04:02:34] 2025-10-13 02:01:59,142 | INFO     | neventsw: 0
[2025-10-13 04:02:34] 2025-10-13 02:01:59,142 | INFO     | pid: 648503
[2025-10-13 04:02:34] 2025-10-13 02:01:59,143 | INFO     | pgrp: 648503
[2025-10-13 04:02:34] 2025-10-13 02:01:59,143 | INFO     | corecount: 12
[2025-10-13 04:02:34] 2025-10-13 02:01:59,143 | INFO     | event service: False
[2025-10-13 04:02:34] 2025-10-13 02:01:59,143 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 3975: 2375037, 3976: 2384035, 3978: 2384091, 3983: 2384413}
[2025-10-13 04:02:34] 2025-10-13 02:01:59,143 | INFO     | --------------------------------------------------
[2025-10-13 04:02:34] 2025-10-13 02:01:59,143 | INFO     | 
[2025-10-13 04:02:34] 2025-10-13 02:01:59,143 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 04:02:34] 2025-10-13 02:01:59,161 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,162 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,162 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,162 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,162 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,162 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,162 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,162 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,163 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,163 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,163 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,163 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,163 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,163 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,163 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,163 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,163 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,163 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 04:02:34] 2025-10-13 02:01:59,163 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,164 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 04:02:34] 2025-10-13 02:01:59,164 | INFO     | job 6840531142 has completed (purged errors)
[2025-10-13 04:02:34] 2025-10-13 02:01:59,164 | INFO     | overall cleanup function is called
[2025-10-13 04:02:34] 2025-10-13 02:02:00,171 | INFO     | --- collectZombieJob: --- 10, [648503]
[2025-10-13 04:02:34] 2025-10-13 02:02:00,171 | INFO     | zombie collector waiting for pid 648503
[2025-10-13 04:02:34] 2025-10-13 02:02:00,171 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 04:02:34] 2025-10-13 02:02:00,171 | INFO     | collected zombie processes
[2025-10-13 04:02:34] 2025-10-13 02:02:00,171 | INFO     | will attempt to kill all subprocesses of pid=648503
[2025-10-13 04:02:34] 2025-10-13 02:02:00,252 | INFO     | process IDs to be killed: [648503] (in reverse order)
[2025-10-13 04:02:34] 2025-10-13 02:02:00,290 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 04:02:34] 2025-10-13 02:02:00,291 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 04:02:34] 2025-10-13 02:02:00,293 | INFO     | did not find any defunct processes belonging to 648503
[2025-10-13 04:02:34] 2025-10-13 02:02:00,295 | INFO     | did not find any defunct processes belonging to 648503
[2025-10-13 04:02:34] 2025-10-13 02:02:00,295 | INFO     | ready for new job
[2025-10-13 04:02:34] 2025-10-13 02:02:00,295 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 04:02:34] 2025-10-13 02:02:00,297 | INFO     | ***************************************
[2025-10-13 04:02:34] 2025-10-13 02:02:00,297 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 04:02:34] 2025-10-13 02:02:00,297 | INFO     | ***************************************
[2025-10-13 04:02:34] 2025-10-13 02:02:00,297 | INFO     | 
[2025-10-13 04:02:34] 2025-10-13 02:02:00,297 | INFO     | architecture information:
[2025-10-13 04:02:34] 2025-10-13 02:02:00,298 | INFO     | executing command: cat /etc/os-release
[2025-10-13 04:02:34] 2025-10-13 02:02:00,309 | INFO     | cat /etc/os-release:
[2025-10-13 04:02:34] NAME="CentOS Linux"
[2025-10-13 04:02:34] VERSION="7 (Core)"
[2025-10-13 04:02:34] ID="centos"
[2025-10-13 04:02:34] ID_LIKE="rhel fedora"
[2025-10-13 04:02:34] VERSION_ID="7"
[2025-10-13 04:02:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 04:02:34] ANSI_COLOR="0;31"
[2025-10-13 04:02:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 04:02:34] HOME_URL="https://www.centos.org/"
[2025-10-13 04:02:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 04:02:34] 
[2025-10-13 04:02:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 04:02:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 04:02:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 04:02:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 04:02:34] 
[2025-10-13 04:02:34] 2025-10-13 02:02:00,309 | INFO     | ***************************************
[2025-10-13 04:02:34] 2025-10-13 02:02:00,812 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 04:02:34] 2025-10-13 02:02:00,826 | INFO     | sufficient remaining disk space (871031111680 B)
[2025-10-13 04:02:34] 2025-10-13 02:02:00,827 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 04:02:34] 2025-10-13 02:02:00,827 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 04:02:34] 2025-10-13 02:02:00,827 | INFO     | update_server=False
[2025-10-13 04:02:34] 2025-10-13 02:02:00,827 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 04:02:34] 2025-10-13 02:02:00,827 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:02:34] 2025-10-13 02:02:00,827 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 04:02:34] 2025-10-13 02:02:00,828 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 04:02:34] 2025-10-13 02:02:01,107 | INFO     | all data control threads have been joined
[2025-10-13 04:02:34] 2025-10-13 02:02:01,167 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 04:02:34] 2025-10-13 02:02:01,167 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 04:02:34] 2025-10-13 02:02:01,167 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:02:34] 2025-10-13 02:02:01,167 | INFO     | will abort loop
[2025-10-13 04:02:34] 2025-10-13 02:02:01,351 | INFO     | all payload control threads have been joined
[2025-10-13 04:02:34] 2025-10-13 02:02:01,832 | INFO     | [job] retrieve thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:01,833 | INFO     | [job] queue monitor thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:02,008 | INFO     | all job control threads have been joined
[2025-10-13 04:02:34] 2025-10-13 02:02:02,113 | INFO     | [data] control thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:02,172 | INFO     | [job] job monitor thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:02,334 | INFO     | [job] validate thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:02,356 | INFO     | [payload] control thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:02,365 | INFO     | [payload] validate_post thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:02,433 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:02,467 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:02,759 | INFO     | [payload] failed_post thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:02,833 | INFO     | [data] copytool_out thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:02,837 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:03,014 | INFO     | [job] control thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:03,064 | INFO     | [data] copytool_in thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:03,200 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:04,834 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 04:02:34] 2025-10-13 02:02:27,942 | INFO     | [monitor] cgroup control has ended
[2025-10-13 04:02:34] 2025-10-13 02:02:29,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139926730118976)>', '<ExcThread(monitor, started 139926041507584)>']
[2025-10-13 04:02:34] 2025-10-13 02:02:30,770 | INFO     | PID=641175 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 04:02:34] 2025-10-13 02:02:30,771 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 04:02:34] 2025-10-13 02:02:30,771 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 04:02:34] 2025-10-13 02:02:30,771 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 04:02:34] 2025-10-13 02:02:30,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 04:02:34] 2025-10-13 02:02:30,771 | INFO     | [monitor] control thread has ended
[2025-10-13 04:02:34] 2025-10-13 02:02:34,073 | INFO     | all workflow threads have been joined
[2025-10-13 04:02:34] 2025-10-13 02:02:34,073 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 04:02:34] 2025-10-13 02:02:34,073 | INFO     | traces error code: 0
[2025-10-13 04:02:34] 2025-10-13 02:02:34,073 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 04:02:34] 2025-10-13 02:02:34,154 [wrapper] ==== pilot stdout END ====
[2025-10-13 04:02:34] 2025-10-13 02:02:34,156 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 04:02:34] 2025-10-13 02:02:34,159 [wrapper] pilotpid: 641175
[2025-10-13 04:02:34] 2025-10-13 02:02:34,162 [wrapper] Pilot exit status: 0
[2025-10-13 04:02:34] 2025-10-13 02:02:34,170 [wrapper] pandaids: 6840531142
[2025-10-13 04:02:34] 2025-10-13 02:02:34,190 [wrapper] cleanup supervisor_pilot  663163 641176
[2025-10-13 04:02:34] 2025-10-13 02:02:34,192 [wrapper] Test setup, not cleaning
[2025-10-13 04:02:34] 2025-10-13 02:02:34,194 [wrapper] apfmon messages muted
[2025-10-13 04:02:34] 2025-10-13 02:02:34,196 [wrapper] ==== wrapper stdout END ====
[2025-10-13 04:02:34] 2025-10-13 02:02:34,198 [wrapper] ==== wrapper stderr END ====
[2025-10-13 04:02:34]  *** Error codes and diagnostics ***
[2025-10-13 04:02:34]     "exeErrorCode": 0,
[2025-10-13 04:02:34]     "exeErrorDiag": "",
[2025-10-13 04:02:34]     "pilotErrorCode": 0,
[2025-10-13 04:02:34]     "pilotErrorDiag": "",
[2025-10-13 04:02:34]  *** Listing of results directory ***
[2025-10-13 04:02:34] total 405368
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc    557409 Oct 12 19:57 pilot3.tar.gz
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc      5112 Oct 12 20:02 queuedata.json
[2025-10-13 04:02:34] -rwx------. 1 boinc boinc     36292 Oct 12 20:03 runpilot2-wrapper.sh
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc       100 Oct 13 02:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 04:02:34] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 02:55 run_atlas
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc       105 Oct 13 02:55 job.xml
[2025-10-13 04:02:34] -rw-r--r--. 2 boinc boinc 220953595 Oct 13 02:55 EVNT.46676267._004383.pool.root.1
[2025-10-13 04:02:34] -rw-r--r--. 2 boinc boinc     15120 Oct 13 02:55 start_atlas.sh
[2025-10-13 04:02:34] drwxrwx--x. 2 boinc boinc        68 Oct 13 02:55 shared
[2025-10-13 04:02:34] -rw-r--r--. 2 boinc boinc    569679 Oct 13 02:55 input.tar.gz
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc      6291 Oct 13 02:55 init_data.xml
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc         0 Oct 13 02:55 boinc_lockfile
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc      2550 Oct 13 02:55 pandaJob.out
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc    975603 Oct 13 02:55 agis_schedconf.cvmfs.json
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc   1560580 Oct 13 02:55 agis_ddmendpoints.agis.ALL.json
[2025-10-13 04:02:34] drwx------. 5 boinc boinc      4096 Oct 13 02:55 pilot3
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc 188329968 Oct 13 04:01 HITS.46676269._085584.pool.root.1
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc       530 Oct 13 04:01 boinc_task_state.xml
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc      1014 Oct 13 04:01 memory_monitor_summary.json
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc    376981 Oct 13 04:01 log.46676269._085584.job.log.tgz.1
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc      7789 Oct 13 04:01 heartbeat.json
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc      8192 Oct 13 04:02 boinc_mmap_file
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc        27 Oct 13 04:02 wrapper_checkpoint.txt
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc        95 Oct 13 04:02 pilot_heartbeat.json
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc      4934 Oct 13 04:02 pilotlog.txt
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc    585587 Oct 13 04:02 log.46676269._085584.job.log.1
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc       357 Oct 13 04:02 output.list
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc       620 Oct 13 04:02 runtime_log
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc    983040 Oct 13 04:02 result.tar.gz
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc      8727 Oct 13 04:02 runtime_log.err
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc       655 Oct 13 04:02 cgOMDmHbFS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmDdUMDmF8RW8m.diag
[2025-10-13 04:02:34] -rw-r--r--. 1 boinc boinc     22024 Oct 13 04:02 stderr.txt
[2025-10-13 04:02:34] HITS file was successfully produced:
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc 188329968 Oct 13 04:01 shared/HITS.pool.root.1
[2025-10-13 04:02:34]  *** Contents of shared directory: ***
[2025-10-13 04:02:34] total 401228
[2025-10-13 04:02:34] -rw-r--r--. 2 boinc boinc 220953595 Oct 13 02:55 ATLAS.root_0
[2025-10-13 04:02:34] -rw-r--r--. 2 boinc boinc     15120 Oct 13 02:55 start_atlas.sh
[2025-10-13 04:02:34] -rw-r--r--. 2 boinc boinc    569679 Oct 13 02:55 input.tar.gz
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc 188329968 Oct 13 04:01 HITS.pool.root.1
[2025-10-13 04:02:34] -rw-------. 1 boinc boinc    983040 Oct 13 04:02 result.tar.gz
04:02:35 (637434): run_atlas exited; CPU time 42846.781023
04:02:35 (637434): called boinc_finish(0)

</stderr_txt>
]]>

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