Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:04:15 (3672018): wrapper (7.7.26015): starting
08:04:15 (3672018): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 08:04:15] Arguments: --nthreads 3
[2025-10-13 08:04:15] Threads: 3
[2025-10-13 08:04:15] Checking for CVMFS
[2025-10-13 08:04:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:04:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:04:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:04:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:04:15] 2.9.2.0 796922 5400 85016 151650 1 57 32827755 36864001 0 130560 0 4299973 99.991 186847 961 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 08:04:15] CVMFS is ok
[2025-10-13 08:04:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:04:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:04:15] Further information can be found at the LHC@home message board.
[2025-10-13 08:04:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:04:15] Checking for apptainer binary...
[2025-10-13 08:04:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:04:15] Running /usr/bin/apptainer --version
[2025-10-13 08:04:15] apptainer version 1.4.1-1.1
[2025-10-13 08:04:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:04:15] atlasA303
[2025-10-13 08:04:15] apptainer works
[2025-10-13 08:04:16] Set ATHENA_PROC_NUMBER=3
[2025-10-13 08:04:16] Set ATHENA_CORE_NUMBER=3
[2025-10-13 08:04:16] Starting ATLAS job with PandaID=6840531154
[2025-10-13 08:04:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:27:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:27:44] 2025-10-13 07:27:12,959 | INFO     | --- collectZombieJob: --- 10, [3682254]
[2025-10-13 09:27:44] 2025-10-13 07:27:12,960 | INFO     | zombie collector waiting for pid 3682254
[2025-10-13 09:27:44] 2025-10-13 07:27:12,960 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:27:44] 2025-10-13 07:27:12,960 | INFO     | collected zombie processes
[2025-10-13 09:27:44] 2025-10-13 07:27:12,960 | INFO     | will attempt to kill all subprocesses of pid=3682254
[2025-10-13 09:27:44] 2025-10-13 07:27:13,001 | INFO     | process IDs to be killed: [3682254] (in reverse order)
[2025-10-13 09:27:44] 2025-10-13 07:27:13,027 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:27:44] 2025-10-13 07:27:13,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:27:44] 2025-10-13 07:27:13,028 | INFO     | did not find any defunct processes belonging to 3682254
[2025-10-13 09:27:44] 2025-10-13 07:27:13,029 | INFO     | did not find any defunct processes belonging to 3682254
[2025-10-13 09:27:44] 2025-10-13 07:27:13,029 | INFO     | ready for new job
[2025-10-13 09:27:44] 2025-10-13 07:27:13,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:27:44] 2025-10-13 07:27:13,030 | INFO     | ***************************************
[2025-10-13 09:27:44] 2025-10-13 07:27:13,030 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:27:44] 2025-10-13 07:27:13,030 | INFO     | ***************************************
[2025-10-13 09:27:44] 2025-10-13 07:27:13,030 | INFO     | 
[2025-10-13 09:27:44] 2025-10-13 07:27:13,030 | INFO     | architecture information:
[2025-10-13 09:27:44] 2025-10-13 07:27:13,031 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:27:44] 2025-10-13 07:27:13,040 | INFO     | cat /etc/os-release:
[2025-10-13 09:27:44] NAME="CentOS Linux"
[2025-10-13 09:27:44] VERSION="7 (Core)"
[2025-10-13 09:27:44] ID="centos"
[2025-10-13 09:27:44] ID_LIKE="rhel fedora"
[2025-10-13 09:27:44] VERSION_ID="7"
[2025-10-13 09:27:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:27:44] ANSI_COLOR="0;31"
[2025-10-13 09:27:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:27:44] HOME_URL="https://www.centos.org/"
[2025-10-13 09:27:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:27:44] 
[2025-10-13 09:27:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:27:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:27:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:27:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:27:44] 
[2025-10-13 09:27:44] 2025-10-13 07:27:13,040 | INFO     | ***************************************
[2025-10-13 09:27:44] 2025-10-13 07:27:13,543 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 09:27:44] 2025-10-13 07:27:13,558 | INFO     | sufficient remaining disk space (371967655936 B)
[2025-10-13 09:27:44] 2025-10-13 07:27:13,558 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:27:44] 2025-10-13 07:27:13,558 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:27:44] 2025-10-13 07:27:13,558 | INFO     | update_server=False
[2025-10-13 09:27:44] 2025-10-13 07:27:13,558 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:27:44] 2025-10-13 07:27:13,558 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:27:44] 2025-10-13 07:27:13,558 | INFO     | aborting loop
[2025-10-13 09:27:44] 2025-10-13 07:27:13,558 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:27:44] 2025-10-13 07:27:13,951 | INFO     | all payload control threads have been joined
[2025-10-13 09:27:44] 2025-10-13 07:27:13,966 | INFO     | all data control threads have been joined
[2025-10-13 09:27:44] 2025-10-13 07:27:14,005 | INFO     | all job control threads have been joined
[2025-10-13 09:27:44] 2025-10-13 07:27:14,440 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:27:44] 2025-10-13 07:27:14,559 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:14,559 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:14,559 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:14,576 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:14,956 | INFO     | [payload] control thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:14,971 | INFO     | [data] control thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:15,011 | INFO     | [job] control thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:15,157 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:15,310 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:15,406 | INFO     | [job] validate thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:15,502 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:15,507 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:15,691 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:16,446 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:16,990 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:27:44] 2025-10-13 07:27:20,997 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:23,748 | INFO     | job.realtimelogging is not enabled
[2025-10-13 09:27:44] 2025-10-13 07:27:24,754 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:27:44] 2025-10-13 07:27:27,651 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:27:44] 2025-10-13 07:27:29,348 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139639780050752)>', '<ExcThread(monitor, started 139638765246208)>']
[2025-10-13 09:27:44] 2025-10-13 07:27:34,374 | INFO     | all workflow threads have been joined
[2025-10-13 09:27:44] 2025-10-13 07:27:34,374 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:27:44] 2025-10-13 07:27:34,374 | INFO     | traces error code: 0
[2025-10-13 09:27:44] 2025-10-13 07:27:34,375 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:27:44] 2025-10-13 07:27:44,550 | INFO     | PID=3675753 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:27:44] 2025-10-13 07:27:44,551 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:27:44] 2025-10-13 07:27:44,551 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:27:44] 2025-10-13 07:27:44,551 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:27:44] 2025-10-13 07:27:44,551 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:27:44] 2025-10-13 07:27:44,551 | INFO     | [monitor] control thread has ended
[2025-10-13 09:27:44] 2025-10-13 07:27:44,598 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:27:44] 2025-10-13 07:27:44,601 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:27:44] 2025-10-13 07:27:44,603 [wrapper] pilotpid: 3675753
[2025-10-13 09:27:44] 2025-10-13 07:27:44,606 [wrapper] Pilot exit status: 0
[2025-10-13 09:27:44] 2025-10-13 07:27:44,614 [wrapper] pandaids: 6840531154
[2025-10-13 09:27:44] 2025-10-13 07:27:44,631 [wrapper] cleanup supervisor_pilot 3711560 3675754
[2025-10-13 09:27:44] 2025-10-13 07:27:44,633 [wrapper] Test setup, not cleaning
[2025-10-13 09:27:44] 2025-10-13 07:27:44,636 [wrapper] apfmon messages muted
[2025-10-13 09:27:44] 2025-10-13 07:27:44,638 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:27:44] 2025-10-13 07:27:44,641 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:27:44]  *** Error codes and diagnostics ***
[2025-10-13 09:27:44]     "exeErrorCode": 0,
[2025-10-13 09:27:44]     "exeErrorDiag": "",
[2025-10-13 09:27:44]     "pilotErrorCode": 0,
[2025-10-13 09:27:44]     "pilotErrorDiag": "",
[2025-10-13 09:27:44]  *** Listing of results directory ***
[2025-10-13 09:27:44] total 411328
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc    557409 Oct 12 19:57 pilot3.tar.gz
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc      5112 Oct 12 20:02 queuedata.json
[2025-10-13 09:27:44] -rwx------ 1 boinc boinc     36292 Oct 12 20:03 runpilot2-wrapper.sh
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:27:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:04 run_atlas
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:04 job.xml
[2025-10-13 09:27:44] -rw-r--r-- 2 boinc boinc 221068235 Oct 13 08:04 EVNT.46676267._004384.pool.root.1
[2025-10-13 09:27:44] -rw-r--r-- 2 boinc boinc    569679 Oct 13 08:04 input.tar.gz
[2025-10-13 09:27:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:04 start_atlas.sh
[2025-10-13 09:27:44] drwxrwx--x 2 boinc boinc      4096 Oct 13 08:04 shared
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:04 boinc_setup_complete
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc      6450 Oct 13 08:04 init_data.xml
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:04 boinc_lockfile
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc      2547 Oct 13 08:04 pandaJob.out
[2025-10-13 09:27:44] -rw------- 1 boinc boinc    973230 Oct 13 08:04 agis_schedconf.cvmfs.json
[2025-10-13 09:27:44] -rw------- 1 boinc boinc   1560580 Oct 13 08:04 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:27:44] drwx------ 5 boinc boinc      4096 Oct 13 08:04 pilot3
[2025-10-13 09:27:44] -rw------- 1 boinc boinc 194315349 Oct 13 09:26 HITS.46676269._085596.pool.root.1
[2025-10-13 09:27:44] -rw------- 1 boinc boinc        95 Oct 13 09:26 pilot_heartbeat.json
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc       529 Oct 13 09:26 boinc_task_state.xml
[2025-10-13 09:27:44] -rw------- 1 boinc boinc      1017 Oct 13 09:27 memory_monitor_summary.json
[2025-10-13 09:27:44] -rw------- 1 boinc boinc    239691 Oct 13 09:27 log.46676269._085596.job.log.tgz.1
[2025-10-13 09:27:44] -rw------- 1 boinc boinc      7758 Oct 13 09:27 heartbeat.json
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc      8192 Oct 13 09:27 boinc_mmap_file
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc        27 Oct 13 09:27 wrapper_checkpoint.txt
[2025-10-13 09:27:44] -rw------- 1 boinc boinc       747 Oct 13 09:27 pilotlog.txt
[2025-10-13 09:27:44] -rw------- 1 boinc boinc    729081 Oct 13 09:27 log.46676269._085596.job.log.1
[2025-10-13 09:27:44] -rw------- 1 boinc boinc       357 Oct 13 09:27 output.list
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc       620 Oct 13 09:27 runtime_log
[2025-10-13 09:27:44] -rw------- 1 boinc boinc    983040 Oct 13 09:27 result.tar.gz
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc      8792 Oct 13 09:27 runtime_log.err
[2025-10-13 09:27:44] -rw------- 1 boinc boinc       661 Oct 13 09:27 hZiMDmHbFS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmPdUMDmkb47Zn.diag
[2025-10-13 09:27:44] -rw-r--r-- 1 boinc boinc     10709 Oct 13 09:27 stderr.txt
[2025-10-13 09:27:44] HITS file was successfully produced:
[2025-10-13 09:27:44] -rw------- 1 boinc boinc 194315349 Oct 13 09:26 shared/HITS.pool.root.1
[2025-10-13 09:27:44]  *** Contents of shared directory: ***
[2025-10-13 09:27:44] total 407196
[2025-10-13 09:27:44] -rw-r--r-- 2 boinc boinc 221068235 Oct 13 08:04 ATLAS.root_0
[2025-10-13 09:27:44] -rw-r--r-- 2 boinc boinc    569679 Oct 13 08:04 input.tar.gz
[2025-10-13 09:27:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:04 start_atlas.sh
[2025-10-13 09:27:44] -rw------- 1 boinc boinc 194315349 Oct 13 09:26 HITS.pool.root.1
[2025-10-13 09:27:44] -rw------- 1 boinc boinc    983040 Oct 13 09:27 result.tar.gz
09:27:46 (3672018): run_atlas exited; CPU time 14167.995045
09:27:46 (3672018): called boinc_finish(0)

</stderr_txt>
]]>

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