Name kMXNDmPkES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGnkNDmQ3MAEo_1
Workunit 235951802
Created 12 Oct 2025, 19:41:58 UTC
Sent 12 Oct 2025, 21:08:46 UTC
Report deadline 20 Oct 2025, 21:08:46 UTC
Received 12 Oct 2025, 23:50:37 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 10943980
Run time 46 min 35 sec
CPU time 5 hours 29 min 39 sec
Validate state Valid
Credit 51.77
Device peak FLOPS 8.00 GFLOPS
Application version ATLAS Simulation v3.01 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.91 GB
Peak swap size 3.01 GB
Peak disk usage 621.71 MB

Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
01:03:13 (323): wrapper (7.7.26015): starting
01:03:13 (323): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 01:03:13] Arguments: --nthreads 8
[2025-10-13 01:03:13] Threads: 8
[2025-10-13 01:03:13] Checking for CVMFS
[2025-10-13 01:03:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:03:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:03:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:03:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:03:14] 2.11.0.0 4245 1168 65332 151640 1 57 1904409 4096001 917 130560 0 1051461 99.375 708694 1101 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-13 01:03:14] CVMFS is ok
[2025-10-13 01:03:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:03:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:03:14] Further information can be found at the LHC@home message board.
[2025-10-13 01:03:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:03:14] Checking for apptainer binary...
[2025-10-13 01:03:14] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-13 01:03:14] apptainer is not installed, using version from CVMFS
[2025-10-13 01:03:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:03:14] WARNING: Environment variable TMPDIR already has value [/tmp/job_10534540/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node142
[2025-10-13 01:03:14] apptainer works
[2025-10-13 01:03:14] Set ATHENA_PROC_NUMBER=8
[2025-10-13 01:03:14] Set ATHENA_CORE_NUMBER=8
[2025-10-13 01:03:14] Starting ATLAS job with PandaID=6840428744
[2025-10-13 01:03:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10534540/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:49:45]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:49:45] 2025-10-12 23:49:09,407 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 01:49:45] 2025-10-12 23:49:09,407 | INFO     | summary of transferred files:
[2025-10-13 01:49:45] 2025-10-12 23:49:09,408 | INFO     |  -- lfn=log.46676269._084328.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 01:49:45] 2025-10-12 23:49:09,408 | INFO     | stage-out finished correctly
[2025-10-13 01:49:45] 2025-10-12 23:49:10,171 | INFO     | time since job start (2751s) is within the limit (172800.0s)
[2025-10-13 01:49:45] 2025-10-12 23:49:10,856 | WARNING  | process 13876 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 01:49:45] 2025-10-12 23:49:10,856 | INFO     | using path: /tmp/job_10534540/atlas/pilot/slots/0/PanDA_Pilot-6840428744/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:49:45] 2025-10-12 23:49:10,856 | INFO     | using path: /tmp/job_10534540/atlas/pilot/slots/0/PanDA_Pilot-6840428744/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:49:45] 2025-10-12 23:49:10,857 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 01:49:45] 2025-10-12 23:49:10,857 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 01:49:45] 2025-10-12 23:49:10,857 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3099960 B
[2025-10-13 01:49:45] 2025-10-12 23:49:10,857 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15817 B
[2025-10-13 01:49:45] 2025-10-12 23:49:10,857 | INFO     | executing command: df -mP /tmp/job_10534540/atlas/pilot/slots/0
[2025-10-13 01:49:45] 2025-10-12 23:49:10,864 | INFO     | sufficient remaining disk space (228842274816 B)
[2025-10-13 01:49:45] 2025-10-12 23:49:10,864 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 01:49:45] 2025-10-12 23:49:10,864 | INFO     | size of work directory /tmp/job_10534540/atlas/pilot/slots/0/PanDA_Pilot-6840428744: 3391561 B (within 2537553920 B limit)
[2025-10-13 01:49:45] 2025-10-12 23:49:10,865 | INFO     | pfn file=/tmp/job_10534540/atlas/pilot/slots/0/PanDA_Pilot-6840428744/HITS.46676269._084328.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 01:49:45] 2025-10-12 23:49:10,865 | INFO     | total size of present files: 0 B (workdir size: 3391561 B)
[2025-10-13 01:49:45] 2025-10-12 23:49:10,865 | INFO     | output file size check: skipping output file /tmp/job_10534540/atlas/pilot/slots/0/PanDA_Pilot-6840428744/HITS.46676269._084328.pool.root.1 since it does not exist
[2025-10-13 01:49:45] 2025-10-12 23:49:10,954 | INFO     | number of running child processes to parent process 13876: 1
[2025-10-13 01:49:45] 2025-10-12 23:49:10,954 | INFO     | maximum number of monitored processes: 6
[2025-10-13 01:49:45] 2025-10-12 23:49:11,171 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 01:49:45] 2025-10-12 23:49:12,182 | INFO     | time since job start (2753s) is within the limit (172800.0s)
[2025-10-13 01:49:45] 2025-10-12 23:49:12,290 | INFO     | job 6840428744 has state=finished
[2025-10-13 01:49:45] 2025-10-12 23:49:12,290 | INFO     | preparing for final server update for job 6840428744 in state='finished'
[2025-10-13 01:49:45] 2025-10-12 23:49:12,291 | INFO     | this job has now completed (state=finished)
[2025-10-13 01:49:45] 2025-10-12 23:49:12,291 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 01:49:45] 2025-10-12 23:49:12,291 | INFO     | log transfer has been attempted: DONE
[2025-10-13 01:49:45] 2025-10-12 23:49:12,291 | INFO     | job 6840428744 has finished - writing final server update
[2025-10-13 01:49:45] 2025-10-12 23:49:12,291 | INFO     | total number of processed events: 400 (read)
[2025-10-13 01:49:45] 2025-10-12 23:49:12,291 | INFO     | executing command: lscpu
[2025-10-13 01:49:45] 2025-10-12 23:49:12,321 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 01:49:45] 2025-10-12 23:49:13,457 | INFO     | monitor loop #206: job 0:6840428744 is in state 'finished'
[2025-10-13 01:49:45] 2025-10-12 23:49:13,457 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 01:49:45] 2025-10-12 23:49:13,978 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 01:49:45] 2025-10-12 23:49:13,983 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2380.0280000000002
[2025-10-13 01:49:45] 2025-10-12 23:49:13,988 | INFO     | using path: /tmp/job_10534540/atlas/pilot/slots/0/PanDA_Pilot-6840428744/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:49:45] 2025-10-12 23:49:13,988 | INFO     | extracted standard info from prmon json
[2025-10-13 01:49:45] 2025-10-12 23:49:13,988 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:49:45] 2025-10-12 23:49:13,988 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:49:45] 2025-10-12 23:49:13,988 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:49:45] 2025-10-12 23:49:13,989 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:49:45] 2025-10-12 23:49:13,989 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:49:45] 2025-10-12 23:49:13,989 | INFO     | sum of square deviations: 17003109.5
[2025-10-13 01:49:45] 2025-10-12 23:49:13,989 | INFO     | sum of deviations: -2663746444.5
[2025-10-13 01:49:45] 2025-10-12 23:49:13,989 | INFO     | mean x: 1760311650.5
[2025-10-13 01:49:45] 2025-10-12 23:49:13,989 | INFO     | mean y: 2630626.710526316
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | -- intersect: 275777123535.2754
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | intersect: 275777123535.2754
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | chi2: 0.0750883781531231
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | -- intersect: 275777123535.2754
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | current memory leak: -156.66 B/s (using 38 data points, chi2=0.08)
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | could have reported an average CPU frequency of 2408 MHz (5 samples)
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | ..............................
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | . Timing measurements:
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | . get job = 0 s
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | . initial setup = 1 s
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | . payload setup = 2 s
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | . stage-in = 0 s
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | . payload execution = 2730 s
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | . stage-out = 0 s
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | . log creation = 0 s
[2025-10-13 01:49:45] 2025-10-12 23:49:13,990 | INFO     | ..............................
[2025-10-13 01:49:45] 2025-10-12 23:49:14,041 | INFO     | 
[2025-10-13 01:49:45] 2025-10-12 23:49:14,041 | INFO     | job summary report
[2025-10-13 01:49:45] 2025-10-12 23:49:14,041 | INFO     | --------------------------------------------------
[2025-10-13 01:49:45] 2025-10-12 23:49:14,041 | INFO     | PanDA job id: 6840428744
[2025-10-13 01:49:45] 2025-10-12 23:49:14,041 | INFO     | task id: 46676269
[2025-10-13 01:49:45] 2025-10-12 23:49:14,041 | INFO     | errors: (none)
[2025-10-13 01:49:45] 2025-10-12 23:49:14,041 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:49:45] 2025-10-12 23:49:14,041 | INFO     | pilot state: finished 
[2025-10-13 01:49:45] 2025-10-12 23:49:14,041 | INFO     | transexitcode: 0
[2025-10-13 01:49:45] 2025-10-12 23:49:14,041 | INFO     | exeerrorcode: 0
[2025-10-13 01:49:45] 2025-10-12 23:49:14,041 | INFO     | exeerrordiag: 
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | exitcode: 0
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | exitmsg: OK
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | cpuconsumptiontime: 19744 s
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | nevents: 400
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | neventsw: 0
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | pid: 13876
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | pgrp: 13876
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | corecount: 8
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | event service: False
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | sizes: {0: 2348983, 2: 2349245, 10: 2349273, 2736: 2374682, 2737: 2383710, 2739: 2383794, 2742: 2384148}
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | --------------------------------------------------
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | 
[2025-10-13 01:49:45] 2025-10-12 23:49:14,042 | INFO     | executing command: ls -lF /tmp/job_10534540/atlas/pilot/slots/0
[2025-10-13 01:49:45] 2025-10-12 23:49:14,051 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,051 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,051 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,051 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,051 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,051 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,051 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,051 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,051 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,051 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,052 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,052 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,052 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,052 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,052 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,052 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,052 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,052 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:49:45] 2025-10-12 23:49:14,052 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,052 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:49:45] 2025-10-12 23:49:14,052 | INFO     | job 6840428744 has completed (purged errors)
[2025-10-13 01:49:45] 2025-10-12 23:49:14,052 | INFO     | overall cleanup function is called
[2025-10-13 01:49:45] 2025-10-12 23:49:15,058 | INFO     | --- collectZombieJob: --- 10, [13876]
[2025-10-13 01:49:45] 2025-10-12 23:49:15,058 | INFO     | zombie collector waiting for pid 13876
[2025-10-13 01:49:45] 2025-10-12 23:49:15,058 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:49:45] 2025-10-12 23:49:15,058 | INFO     | collected zombie processes
[2025-10-13 01:49:45] 2025-10-12 23:49:15,058 | INFO     | will attempt to kill all subprocesses of pid=13876
[2025-10-13 01:49:45] 2025-10-12 23:49:15,149 | INFO     | process IDs to be killed: [13876] (in reverse order)
[2025-10-13 01:49:45] 2025-10-12 23:49:15,178 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:49:45] 2025-10-12 23:49:15,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:49:45] 2025-10-12 23:49:15,182 | INFO     | did not find any defunct processes belonging to 13876
[2025-10-13 01:49:45] 2025-10-12 23:49:15,184 | INFO     | did not find any defunct processes belonging to 13876
[2025-10-13 01:49:45] 2025-10-12 23:49:15,185 | INFO     | ready for new job
[2025-10-13 01:49:45] 2025-10-12 23:49:15,185 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:49:45] 2025-10-12 23:49:15,185 | INFO     | ***************************************
[2025-10-13 01:49:45] 2025-10-12 23:49:15,185 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:49:45] 2025-10-12 23:49:15,185 | INFO     | ***************************************
[2025-10-13 01:49:45] 2025-10-12 23:49:15,185 | INFO     | 
[2025-10-13 01:49:45] 2025-10-12 23:49:15,198 | INFO     | architecture information:
[2025-10-13 01:49:45] 2025-10-12 23:49:15,198 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:49:45] 2025-10-12 23:49:15,204 | INFO     | cat /etc/os-release:
[2025-10-13 01:49:45] NAME="CentOS Linux"
[2025-10-13 01:49:45] VERSION="7 (Core)"
[2025-10-13 01:49:45] ID="centos"
[2025-10-13 01:49:45] ID_LIKE="rhel fedora"
[2025-10-13 01:49:45] VERSION_ID="7"
[2025-10-13 01:49:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:49:45] ANSI_COLOR="0;31"
[2025-10-13 01:49:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:49:45] HOME_URL="https://www.centos.org/"
[2025-10-13 01:49:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:49:45] 
[2025-10-13 01:49:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:49:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:49:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:49:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:49:45] 
[2025-10-13 01:49:45] 2025-10-12 23:49:15,204 | INFO     | ***************************************
[2025-10-13 01:49:45] 2025-10-12 23:49:15,707 | INFO     | executing command: df -mP /tmp/job_10534540/atlas/pilot/slots/0
[2025-10-13 01:49:45] 2025-10-12 23:49:15,714 | INFO     | sufficient remaining disk space (228846469120 B)
[2025-10-13 01:49:45] 2025-10-12 23:49:15,714 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:49:45] 2025-10-12 23:49:15,714 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:49:45] 2025-10-12 23:49:15,714 | INFO     | update_server=False
[2025-10-13 01:49:45] 2025-10-12 23:49:15,714 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:49:45] 2025-10-12 23:49:15,714 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:49:45] 2025-10-12 23:49:15,714 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:49:45] 2025-10-12 23:49:15,960 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 01:49:45] 2025-10-12 23:49:15,960 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 01:49:45] 2025-10-12 23:49:15,960 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:49:45] 2025-10-12 23:49:15,960 | INFO     | will abort loop
[2025-10-13 01:49:45] 2025-10-12 23:49:16,329 | INFO     | all payload control threads have been joined
[2025-10-13 01:49:45] 2025-10-12 23:49:16,466 | INFO     | all data control threads have been joined
[2025-10-13 01:49:45] 2025-10-12 23:49:16,719 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:16,719 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:16,858 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:16,896 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:16,965 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:17,085 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:17,104 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:17,133 | INFO     | all job control threads have been joined
[2025-10-13 01:49:45] 2025-10-12 23:49:17,227 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:49:45] 2025-10-12 23:49:17,335 | INFO     | [payload] control thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:17,471 | INFO     | [data] control thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:17,719 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:17,984 | INFO     | [job] validate thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:18,046 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:18,129 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:18,138 | INFO     | [job] control thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:18,282 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:21,232 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:49:45] 2025-10-12 23:49:23,494 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:49:45] 2025-10-12 23:49:23,748 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060466944)>']
[2025-10-13 01:49:45] 2025-10-12 23:49:28,774 | INFO     | all workflow threads have been joined
[2025-10-13 01:49:45] 2025-10-12 23:49:28,774 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:49:45] 2025-10-12 23:49:28,774 | INFO     | traces error code: 0
[2025-10-13 01:49:45] 2025-10-12 23:49:28,774 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:49:45] 2025-10-12 23:49:45,365 | INFO     | PID=5497 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 01:49:45] 2025-10-12 23:49:45,365 | INFO     | .. there are 2 such processes running
[2025-10-13 01:49:45] 2025-10-12 23:49:45,365 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:49:45] 2025-10-12 23:49:45,365 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:49:45] 2025-10-12 23:49:45,365 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:49:45] 2025-10-12 23:49:45,365 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:49:45] 2025-10-12 23:49:45,365 | INFO     | [monitor] control thread has ended
[2025-10-13 01:49:45] 2025-10-12 23:49:45,418 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:49:45] 2025-10-12 23:49:45,420 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:49:45] 2025-10-12 23:49:45,421 [wrapper] pilotpid: 5497
[2025-10-13 01:49:45] 2025-10-12 23:49:45,422 [wrapper] Pilot exit status: 0
[2025-10-13 01:49:45] 2025-10-12 23:49:45,426 [wrapper] pandaids: 6840428744
[2025-10-13 01:49:45] 2025-10-12 23:49:45,448 [wrapper] cleanup supervisor_pilot 11962 5498
[2025-10-13 01:49:45] 2025-10-12 23:49:45,449 [wrapper] Test setup, not cleaning
[2025-10-13 01:49:45] 2025-10-12 23:49:45,450 [wrapper] apfmon messages muted
[2025-10-13 01:49:45] 2025-10-12 23:49:45,452 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:49:45] 2025-10-12 23:49:45,453 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:49:45]  *** Error codes and diagnostics ***
[2025-10-13 01:49:45]     "exeErrorCode": 0,
[2025-10-13 01:49:45]     "exeErrorDiag": "",
[2025-10-13 01:49:45]     "pilotErrorCode": 0,
[2025-10-13 01:49:45]     "pilotErrorDiag": "",
[2025-10-13 01:49:45]  *** Listing of results directory ***
[2025-10-13 01:49:45] total 411716
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user    557409 Oct 12 18:49 pilot3.tar.gz
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user      5112 Oct 12 19:07 queuedata.json
[2025-10-13 01:49:45] -rwx------ 1 mf493845 unix-user     36292 Oct 12 19:09 runpilot2-wrapper.sh
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user       100 Oct 13 00:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:49:45] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 13 00:06 run_atlas
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user       105 Oct 13 00:06 job.xml
[2025-10-13 01:49:45] -rw-r--r-- 2 mf493845 unix-user 223630462 Oct 13 01:03 EVNT.46676267._004798.pool.root.1
[2025-10-13 01:49:45] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 13 01:03 start_atlas.sh
[2025-10-13 01:49:45] drwxrwx--x 2 mf493845 unix-user       100 Oct 13 01:03 shared
[2025-10-13 01:49:45] -rw-r--r-- 2 mf493845 unix-user    569679 Oct 13 01:03 input.tar.gz
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user      6394 Oct 13 01:03 init_data.xml
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user         0 Oct 13 01:03 boinc_setup_complete
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user      8192 Oct 13 01:03 boinc_mmap_file
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user         0 Oct 13 01:03 boinc_lockfile
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user      2550 Oct 13 01:03 pandaJob.out
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user    975603 Oct 13 01:03 agis_schedconf.cvmfs.json
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user   1560580 Oct 13 01:03 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:49:45] drwx------ 5 mf493845 unix-user       440 Oct 13 01:03 pilot3
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user 192629144 Oct 13 01:48 HITS.46676269._084328.pool.root.1
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user        95 Oct 13 01:48 pilot_heartbeat.json
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user      1011 Oct 13 01:49 memory_monitor_summary.json
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user    291611 Oct 13 01:49 log.46676269._084328.job.log.tgz.1
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user      7773 Oct 13 01:49 heartbeat.json
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user       819 Oct 13 01:49 pilotlog.txt
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user    440764 Oct 13 01:49 log.46676269._084328.job.log.1
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user       357 Oct 13 01:49 output.list
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user       620 Oct 13 01:49 runtime_log
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user    747520 Oct 13 01:49 result.tar.gz
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user      9076 Oct 13 01:49 runtime_log.err
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user       643 Oct 13 01:49 kMXNDmPkES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGnkNDmQ3MAEo.diag
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user     22956 Oct 13 01:49 stderr.txt
[2025-10-13 01:49:45] HITS file was successfully produced:
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user 192629144 Oct 13 01:48 shared/HITS.pool.root.1
[2025-10-13 01:49:45]  *** Contents of shared directory: ***
[2025-10-13 01:49:45] total 407816
[2025-10-13 01:49:45] -rw-r--r-- 2 mf493845 unix-user 223630462 Oct 13 01:03 ATLAS.root_0
[2025-10-13 01:49:45] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 13 01:03 start_atlas.sh
[2025-10-13 01:49:45] -rw-r--r-- 2 mf493845 unix-user    569679 Oct 13 01:03 input.tar.gz
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user 192629144 Oct 13 01:48 HITS.pool.root.1
[2025-10-13 01:49:45] -rw------- 1 mf493845 unix-user    747520 Oct 13 01:49 result.tar.gz
01:49:46 (323): run_atlas exited; CPU time 19779.793486
01:49:46 (323): called boinc_finish(0)

</stderr_txt>
]]>


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