Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:10:45 (20093): wrapper (7.7.26015): starting
17:10:45 (20093): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 17:10:45] Arguments: --nthreads 12
[2025-10-12 17:10:45] Threads: 12
[2025-10-12 17:10:45] Checking for CVMFS
[2025-10-12 17:10:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:10:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:10:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:10:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:10:46] 2.11.2.0 3103 13379 87640 151636 0 59 11149129 20275201 1 130560 0 13919273 99.993 446034 46225 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 17:10:46] CVMFS is ok
[2025-10-12 17:10:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:10:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:10:46] Further information can be found at the LHC@home message board.
[2025-10-12 17:10:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:10:46] Checking for apptainer binary...
[2025-10-12 17:10:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:10:46] Running /usr/bin/apptainer --version
[2025-10-12 17:10:46] apptainer version 1.3.2-1.el7
[2025-10-12 17:10:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:10:47] c-115-41.aglt2.org
[2025-10-12 17:10:47] apptainer works
[2025-10-12 17:10:47] Set ATHENA_PROC_NUMBER=12
[2025-10-12 17:10:47] Set ATHENA_CORE_NUMBER=12
[2025-10-12 17:10:47] Starting ATLAS job with PandaID=6840429769
[2025-10-12 17:10:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:15:14]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:15:14]  scope=mc23_13p6TeV
[2025-10-12 18:15:14]  status=None
[2025-10-12 18:15:14]  status_code=0
[2025-10-12 18:15:14]  storage_token=
[2025-10-12 18:15:14]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840429769/log.46676269._084882.job.log.tgz.1
[2025-10-12 18:15:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/cc/log.46676269._084882.job.log.tgz.1
[2025-10-12 18:15:14]  workdir=None
[2025-10-12 18:15:14] ]
[2025-10-12 18:15:14] 2025-10-12 22:14:29,249 | INFO     | transferring file log.46676269._084882.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840429769/log.46676269._084882.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 18:15:14] 2025-10-12 22:14:29,249 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840429769/log.46676269._084882.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._084882.job
[2025-10-12 18:15:14] 2025-10-12 22:14:29,284 | INFO     | adding to output.list: log.46676269._084882.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/cc/log.46676269._084882.job.log.tg
[2025-10-12 18:15:14] 2025-10-12 22:14:29,285 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 18:15:14] 2025-10-12 22:14:29,285 | INFO     | summary of transferred files:
[2025-10-12 18:15:14] 2025-10-12 22:14:29,285 | INFO     |  -- lfn=log.46676269._084882.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 18:15:14] 2025-10-12 22:14:29,286 | INFO     | stage-out finished correctly
[2025-10-12 18:15:14] 2025-10-12 22:14:30,505 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 18:15:14] 2025-10-12 22:14:30,857 | INFO     | time since job start (3808s) is within the limit (172800.0s)
[2025-10-12 18:15:14] 2025-10-12 22:14:31,080 | INFO     | job 6840429769 has state=finished
[2025-10-12 18:15:14] 2025-10-12 22:14:31,080 | INFO     | preparing for final server update for job 6840429769 in state='finished'
[2025-10-12 18:15:14] 2025-10-12 22:14:31,139 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 18:15:14] 2025-10-12 22:14:31,139 | INFO     | this job has now completed (state=finished)
[2025-10-12 18:15:14] 2025-10-12 22:14:31,139 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 18:15:14] 2025-10-12 22:14:31,140 | INFO     | log transfer has been attempted: DONE
[2025-10-12 18:15:14] 2025-10-12 22:14:31,140 | INFO     | job 6840429769 has finished - writing final server update
[2025-10-12 18:15:14] 2025-10-12 22:14:31,140 | INFO     | total number of processed events: 400 (read)
[2025-10-12 18:15:14] 2025-10-12 22:14:31,141 | INFO     | executing command: lscpu
[2025-10-12 18:15:14] 2025-10-12 22:14:31,165 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 18:15:14] 2025-10-12 22:14:31,347 | WARNING  | process 30258 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 18:15:14] 2025-10-12 22:14:31,348 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840429769/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:15:14] 2025-10-12 22:14:31,445 | INFO     | number of running child processes to parent process 30258: 1
[2025-10-12 18:15:14] 2025-10-12 22:14:31,445 | INFO     | maximum number of monitored processes: 6
[2025-10-12 18:15:14] 2025-10-12 22:14:32,865 | INFO     | time since job start (3810s) is within the limit (172800.0s)
[2025-10-12 18:15:14] 2025-10-12 22:14:33,948 | INFO     | monitor loop #287: job 0:6840429769 is in state 'finished'
[2025-10-12 18:15:14] 2025-10-12 22:14:33,948 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:15:14] 2025-10-12 22:14:33,982 | INFO     | PID=23857 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 18:15:14] 2025-10-12 22:14:34,982 | INFO     | time since job start (3812s) is within the limit (172800.0s)
[2025-10-12 18:15:14] 2025-10-12 22:14:35,674 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 18:15:14] 2025-10-12 22:14:35,678 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-10-12 18:15:14] 2025-10-12 22:14:35,680 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840429769/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:15:14] 2025-10-12 22:14:35,680 | INFO     | extracted standard info from prmon json
[2025-10-12 18:15:14] 2025-10-12 22:14:35,680 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:15:14] 2025-10-12 22:14:35,680 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:15:14] 2025-10-12 22:14:35,681 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:15:14] 2025-10-12 22:14:35,681 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:15:14] 2025-10-12 22:14:35,682 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:15:14] 2025-10-12 22:14:35,682 | INFO     | sum of square deviations: 51573060.0
[2025-10-12 18:15:14] 2025-10-12 22:14:35,683 | INFO     | sum of deviations: 837460460.0000001
[2025-10-12 18:15:14] 2025-10-12 22:14:35,683 | INFO     | mean x: 1760305442.0
[2025-10-12 18:15:14] 2025-10-12 22:14:35,683 | INFO     | mean y: 2730205.654545455
[2025-10-12 18:15:14] 2025-10-12 22:14:35,683 | INFO     | -- intersect: -28581693623.333374
[2025-10-12 18:15:14] 2025-10-12 22:14:35,683 | INFO     | intersect: -28581693623.333374
[2025-10-12 18:15:14] 2025-10-12 22:14:35,683 | INFO     | chi2: 0.007341724355947713
[2025-10-12 18:15:14] 2025-10-12 22:14:35,683 | INFO     | -- intersect: -28581693623.333374
[2025-10-12 18:15:14] 2025-10-12 22:14:35,684 | INFO     | current memory leak: 16.24 B/s (using 55 data points, chi2=0.01)
[2025-10-12 18:15:14] 2025-10-12 22:14:35,684 | INFO     | could have reported an average CPU frequency of 2143 MHz (6 samples)
[2025-10-12 18:15:14] 2025-10-12 22:14:35,684 | INFO     | ..............................
[2025-10-12 18:15:14] 2025-10-12 22:14:35,684 | INFO     | . Timing measurements:
[2025-10-12 18:15:14] 2025-10-12 22:14:35,684 | INFO     | . get job = 0 s
[2025-10-12 18:15:14] 2025-10-12 22:14:35,684 | INFO     | . initial setup = 2 s
[2025-10-12 18:15:14] 2025-10-12 22:14:35,684 | INFO     | . payload setup = 6 s
[2025-10-12 18:15:14] 2025-10-12 22:14:35,684 | INFO     | . stage-in = 0 s
[2025-10-12 18:15:14] 2025-10-12 22:14:35,685 | INFO     | . payload execution = 3780 s
[2025-10-12 18:15:14] 2025-10-12 22:14:35,685 | INFO     | . stage-out = 0 s
[2025-10-12 18:15:14] 2025-10-12 22:14:35,685 | INFO     | . log creation = 0 s
[2025-10-12 18:15:14] 2025-10-12 22:14:35,685 | INFO     | ..............................
[2025-10-12 18:15:14] 2025-10-12 22:14:36,059 | INFO     | 
[2025-10-12 18:15:14] 2025-10-12 22:14:36,059 | INFO     | job summary report
[2025-10-12 18:15:14] 2025-10-12 22:14:36,059 | INFO     | --------------------------------------------------
[2025-10-12 18:15:14] 2025-10-12 22:14:36,059 | INFO     | PanDA job id: 6840429769
[2025-10-12 18:15:14] 2025-10-12 22:14:36,059 | INFO     | task id: 46676269
[2025-10-12 18:15:14] 2025-10-12 22:14:36,060 | INFO     | errors: (none)
[2025-10-12 18:15:14] 2025-10-12 22:14:36,060 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:15:14] 2025-10-12 22:14:36,060 | INFO     | pilot state: finished 
[2025-10-12 18:15:14] 2025-10-12 22:14:36,060 | INFO     | transexitcode: 0
[2025-10-12 18:15:14] 2025-10-12 22:14:36,060 | INFO     | exeerrorcode: 0
[2025-10-12 18:15:14] 2025-10-12 22:14:36,060 | INFO     | exeerrordiag: 
[2025-10-12 18:15:14] 2025-10-12 22:14:36,061 | INFO     | exitcode: 0
[2025-10-12 18:15:14] 2025-10-12 22:14:36,061 | INFO     | exitmsg: OK
[2025-10-12 18:15:14] 2025-10-12 22:14:36,061 | INFO     | cpuconsumptiontime: 40606 s
[2025-10-12 18:15:14] 2025-10-12 22:14:36,061 | INFO     | nevents: 400
[2025-10-12 18:15:14] 2025-10-12 22:14:36,061 | INFO     | neventsw: 0
[2025-10-12 18:15:14] 2025-10-12 22:14:36,061 | INFO     | pid: 30258
[2025-10-12 18:15:14] 2025-10-12 22:14:36,061 | INFO     | pgrp: 30258
[2025-10-12 18:15:14] 2025-10-12 22:14:36,062 | INFO     | corecount: 12
[2025-10-12 18:15:14] 2025-10-12 22:14:36,062 | INFO     | event service: False
[2025-10-12 18:15:14] 2025-10-12 22:14:36,062 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 3790: 2374932, 3791: 2383930, 3792: 2383986, 3797: 2384308}
[2025-10-12 18:15:14] 2025-10-12 22:14:36,062 | INFO     | --------------------------------------------------
[2025-10-12 18:15:14] 2025-10-12 22:14:36,062 | INFO     | 
[2025-10-12 18:15:14] 2025-10-12 22:14:36,063 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 18:15:14] 2025-10-12 22:14:36,087 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,087 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,087 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,087 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,088 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,088 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,088 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,088 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,088 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,089 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,089 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,089 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,089 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,089 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,089 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,089 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,090 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,090 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:15:14] 2025-10-12 22:14:36,090 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,090 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:15:14] 2025-10-12 22:14:36,090 | INFO     | job 6840429769 has completed (purged errors)
[2025-10-12 18:15:14] 2025-10-12 22:14:36,090 | INFO     | overall cleanup function is called
[2025-10-12 18:15:14] 2025-10-12 22:14:37,098 | INFO     | --- collectZombieJob: --- 10, [30258]
[2025-10-12 18:15:14] 2025-10-12 22:14:37,098 | INFO     | zombie collector waiting for pid 30258
[2025-10-12 18:15:14] 2025-10-12 22:14:37,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:15:14] 2025-10-12 22:14:37,099 | INFO     | collected zombie processes
[2025-10-12 18:15:14] 2025-10-12 22:14:37,099 | INFO     | will attempt to kill all subprocesses of pid=30258
[2025-10-12 18:15:14] 2025-10-12 22:14:37,188 | INFO     | process IDs to be killed: [30258] (in reverse order)
[2025-10-12 18:15:14] 2025-10-12 22:14:37,236 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:15:14] 2025-10-12 22:14:37,237 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:15:14] 2025-10-12 22:14:37,240 | INFO     | did not find any defunct processes belonging to 30258
[2025-10-12 18:15:14] 2025-10-12 22:14:37,242 | INFO     | did not find any defunct processes belonging to 30258
[2025-10-12 18:15:14] 2025-10-12 22:14:37,242 | INFO     | ready for new job
[2025-10-12 18:15:14] 2025-10-12 22:14:37,242 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:15:14] 2025-10-12 22:14:37,244 | INFO     | ***************************************
[2025-10-12 18:15:14] 2025-10-12 22:14:37,244 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:15:14] 2025-10-12 22:14:37,244 | INFO     | ***************************************
[2025-10-12 18:15:14] 2025-10-12 22:14:37,244 | INFO     | 
[2025-10-12 18:15:14] 2025-10-12 22:14:37,245 | INFO     | architecture information:
[2025-10-12 18:15:14] 2025-10-12 22:14:37,245 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:15:14] 2025-10-12 22:14:37,259 | INFO     | cat /etc/os-release:
[2025-10-12 18:15:14] NAME="CentOS Linux"
[2025-10-12 18:15:14] VERSION="7 (Core)"
[2025-10-12 18:15:14] ID="centos"
[2025-10-12 18:15:14] ID_LIKE="rhel fedora"
[2025-10-12 18:15:14] VERSION_ID="7"
[2025-10-12 18:15:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:15:14] ANSI_COLOR="0;31"
[2025-10-12 18:15:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:15:14] HOME_URL="https://www.centos.org/"
[2025-10-12 18:15:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:15:14] 
[2025-10-12 18:15:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:15:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:15:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:15:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:15:14] 
[2025-10-12 18:15:14] 2025-10-12 22:14:37,259 | INFO     | ***************************************
[2025-10-12 18:15:14] 2025-10-12 22:14:37,762 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 18:15:14] 2025-10-12 22:14:37,777 | INFO     | sufficient remaining disk space (18592301056 B)
[2025-10-12 18:15:14] 2025-10-12 22:14:37,778 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:15:14] 2025-10-12 22:14:37,778 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:15:14] 2025-10-12 22:14:37,778 | INFO     | update_server=False
[2025-10-12 18:15:14] 2025-10-12 22:14:37,778 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:15:14] 2025-10-12 22:14:37,778 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:15:14] 2025-10-12 22:14:37,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:15:14] 2025-10-12 22:14:37,779 | INFO     | aborting loop
[2025-10-12 18:15:14] 2025-10-12 22:14:37,838 | INFO     | all data control threads have been joined
[2025-10-12 18:15:14] 2025-10-12 22:14:38,230 | INFO     | all payload control threads have been joined
[2025-10-12 18:15:14] 2025-10-12 22:14:38,784 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:38,785 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:38,843 | INFO     | [data] control thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:38,980 | INFO     | all job control threads have been joined
[2025-10-12 18:15:14] 2025-10-12 22:14:39,077 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:39,119 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:39,189 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:39,236 | INFO     | [payload] control thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:39,504 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:39,784 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:39,985 | INFO     | [job] control thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:40,013 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:40,047 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:40,264 | INFO     | [job] validate thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:40,773 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:15:14] 2025-10-12 22:14:41,087 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:15:14] 2025-10-12 22:14:41,779 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:45,093 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:14:48,156 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:15:14] 2025-10-12 22:14:49,162 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:15:14] 2025-10-12 22:15:07,923 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:15:14] 2025-10-12 22:15:08,184 | INFO     | PID=23857 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 18:15:14] 2025-10-12 22:15:08,185 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:15:14] 2025-10-12 22:15:08,185 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:15:14] 2025-10-12 22:15:08,185 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:15:14] 2025-10-12 22:15:09,072 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858458543936)>', '<ExcThread(monitor, started 139857867294464)>']
[2025-10-12 18:15:14] 2025-10-12 22:15:09,190 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:15:14] 2025-10-12 22:15:09,190 | INFO     | [monitor] control thread has ended
[2025-10-12 18:15:14] 2025-10-12 22:15:14,097 | INFO     | all workflow threads have been joined
[2025-10-12 18:15:14] 2025-10-12 22:15:14,098 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:15:14] 2025-10-12 22:15:14,098 | INFO     | traces error code: 0
[2025-10-12 18:15:14] 2025-10-12 22:15:14,099 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:15:14] 2025-10-12 22:15:14,191 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:15:14] 2025-10-12 22:15:14,194 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:15:14] 2025-10-12 22:15:14,199 [wrapper] pilotpid: 23857
[2025-10-12 18:15:14] 2025-10-12 22:15:14,202 [wrapper] Pilot exit status: 0
[2025-10-12 18:15:14] 2025-10-12 22:15:14,217 [wrapper] pandaids: 6840429769
[2025-10-12 18:15:14] 2025-10-12 22:15:14,261 [wrapper] cleanup supervisor_pilot 28359 23858
[2025-10-12 18:15:14] 2025-10-12 22:15:14,264 [wrapper] Test setup, not cleaning
[2025-10-12 18:15:14] 2025-10-12 22:15:14,267 [wrapper] apfmon messages muted
[2025-10-12 18:15:14] 2025-10-12 22:15:14,271 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:15:14] 2025-10-12 22:15:14,274 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:15:14]  *** Error codes and diagnostics ***
[2025-10-12 18:15:14]     "exeErrorCode": 0,
[2025-10-12 18:15:14]     "exeErrorDiag": "",
[2025-10-12 18:15:14]     "pilotErrorCode": 0,
[2025-10-12 18:15:14]     "pilotErrorDiag": "",
[2025-10-12 18:15:14]  *** Listing of results directory ***
[2025-10-12 18:15:14] total 405556
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 13:17 pilot3.tar.gz
[2025-10-12 18:15:14] -rwx------ 1 boincer umatlas     36292 Oct 12 13:30 runpilot2-wrapper.sh
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 13:31 queuedata.json
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas       100 Oct 12 17:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:15:14] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 17:10 run_atlas
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas       105 Oct 12 17:10 job.xml
[2025-10-12 18:15:14] -rw-r--r-- 2 boincer umatlas 221191636 Oct 12 17:10 EVNT.46676267._004820.pool.root.1
[2025-10-12 18:15:14] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:10 start_atlas.sh
[2025-10-12 18:15:14] drwxrwx--x 2 boincer umatlas      4096 Oct 12 17:10 shared
[2025-10-12 18:15:14] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 17:10 input.tar.gz
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas         0 Oct 12 17:10 boinc_lockfile
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 17:10 pandaJob.out
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas    975536 Oct 12 17:10 agis_schedconf.cvmfs.json
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas   1560580 Oct 12 17:11 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:15:14] drwx------ 5 boincer umatlas      4096 Oct 12 17:11 pilot3
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas      5954 Oct 12 18:11 init_data.xml
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas 188323122 Oct 12 18:14 HITS.46676269._084882.pool.root.1
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas       529 Oct 12 18:14 boinc_task_state.xml
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas      1050 Oct 12 18:14 memory_monitor_summary.json
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas    372751 Oct 12 18:14 log.46676269._084882.job.log.tgz.1
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas      7847 Oct 12 18:14 heartbeat.json
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 18:14 boinc_mmap_file
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas        27 Oct 12 18:14 wrapper_checkpoint.txt
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas        95 Oct 12 18:15 pilot_heartbeat.json
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas      4818 Oct 12 18:15 pilotlog.txt
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas    564994 Oct 12 18:15 log.46676269._084882.job.log.1
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas       357 Oct 12 18:15 output.list
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas       620 Oct 12 18:15 runtime_log
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas    952320 Oct 12 18:15 result.tar.gz
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 18:15 runtime_log.err
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas       659 Oct 12 18:15 7GoNDmT5ES8n9Rq4apOajLDm4fhM0noT9bVof3QYDmFXUMDmwBODWo.diag
[2025-10-12 18:15:14] -rw-r--r-- 1 boincer umatlas     22008 Oct 12 18:15 stderr.txt
[2025-10-12 18:15:14] HITS file was successfully produced:
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas 188323122 Oct 12 18:14 shared/HITS.pool.root.1
[2025-10-12 18:15:14]  *** Contents of shared directory: ***
[2025-10-12 18:15:14] total 401432
[2025-10-12 18:15:14] -rw-r--r-- 2 boincer umatlas 221191636 Oct 12 17:10 ATLAS.root_0
[2025-10-12 18:15:14] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:10 start_atlas.sh
[2025-10-12 18:15:14] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 17:10 input.tar.gz
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas 188323122 Oct 12 18:14 HITS.pool.root.1
[2025-10-12 18:15:14] -rw------- 1 boincer umatlas    952320 Oct 12 18:15 result.tar.gz
18:15:15 (20093): run_atlas exited; CPU time 40605.078561
18:15:15 (20093): called boinc_finish(0)

</stderr_txt>
]]>

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