Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:05:08 (30642): wrapper (7.7.26015): starting
17:05:08 (30642): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 17:05:08] Arguments: --nthreads 12
[2025-10-12 17:05:08] Threads: 12
[2025-10-12 17:05:08] Checking for CVMFS
[2025-10-12 17:05:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:05:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:05:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:05:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:05:08] 2.11.2.0 2998 223352 102028 151636 3 59 15563851 20275201 1 130560 1 109385426 99.984 13388915 12707 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 17:05:08] CVMFS is ok
[2025-10-12 17:05:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:05:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:05:08] Further information can be found at the LHC@home message board.
[2025-10-12 17:05:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:05:08] Checking for apptainer binary...
[2025-10-12 17:05:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:05:08] Running /usr/bin/apptainer --version
[2025-10-12 17:05:08] apptainer version 1.3.2-1.el7
[2025-10-12 17:05:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:05:09] c-205-25.aglt2.org
[2025-10-12 17:05:09] apptainer works
[2025-10-12 17:05:09] Set ATHENA_PROC_NUMBER=12
[2025-10-12 17:05:09] Set ATHENA_CORE_NUMBER=12
[2025-10-12 17:05:09] Starting ATLAS job with PandaID=6840713278
[2025-10-12 17:05:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:14:41]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:14:41] 2025-10-12 22:13:58,051 | INFO     | time since job start (4114s) is within the limit (172800.0s)
[2025-10-12 18:14:41] 2025-10-12 22:14:00,045 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 18:14:41] 2025-10-12 22:14:00,062 | INFO     | time since job start (4116s) is within the limit (172800.0s)
[2025-10-12 18:14:41] 2025-10-12 22:14:00,864 | WARNING  | process 8700 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 18:14:41] 2025-10-12 22:14:00,864 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840713278/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:14:41] 2025-10-12 22:14:00,865 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840713278/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:14:41] 2025-10-12 22:14:00,865 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 18:14:41] 2025-10-12 22:14:00,865 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 18:14:41] 2025-10-12 22:14:00,866 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4478600 B
[2025-10-12 18:14:41] 2025-10-12 22:14:00,866 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15542 B
[2025-10-12 18:14:41] 2025-10-12 22:14:00,866 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 18:14:41] 2025-10-12 22:14:00,883 | INFO     | sufficient remaining disk space (29366419456 B)
[2025-10-12 18:14:41] 2025-10-12 22:14:00,883 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 18:14:41] 2025-10-12 22:14:00,884 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6840713278: 4774293 B (within 2537553920 B limit)
[2025-10-12 18:14:41] 2025-10-12 22:14:00,884 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6840713278/HITS.46676269._087600.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 18:14:41] 2025-10-12 22:14:00,885 | INFO     | total size of present files: 0 B (workdir size: 4774293 B)
[2025-10-12 18:14:41] 2025-10-12 22:14:00,885 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6840713278/HITS.46676269._087600.pool.root.1 since it does not exist
[2025-10-12 18:14:41] 2025-10-12 22:14:00,973 | INFO     | number of running child processes to parent process 8700: 1
[2025-10-12 18:14:41] 2025-10-12 22:14:00,973 | INFO     | maximum number of monitored processes: 6
[2025-10-12 18:14:41] 2025-10-12 22:14:02,072 | INFO     | time since job start (4118s) is within the limit (172800.0s)
[2025-10-12 18:14:41] 2025-10-12 22:14:02,485 | INFO     | job 6840713278 has state=finished
[2025-10-12 18:14:41] 2025-10-12 22:14:02,485 | INFO     | preparing for final server update for job 6840713278 in state='finished'
[2025-10-12 18:14:41] 2025-10-12 22:14:02,486 | INFO     | this job has now completed (state=finished)
[2025-10-12 18:14:41] 2025-10-12 22:14:02,486 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 18:14:41] 2025-10-12 22:14:02,486 | INFO     | log transfer has been attempted: DONE
[2025-10-12 18:14:41] 2025-10-12 22:14:02,487 | INFO     | job 6840713278 has finished - writing final server update
[2025-10-12 18:14:41] 2025-10-12 22:14:02,487 | INFO     | total number of processed events: 400 (read)
[2025-10-12 18:14:41] 2025-10-12 22:14:02,488 | INFO     | executing command: lscpu
[2025-10-12 18:14:41] 2025-10-12 22:14:02,514 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 18:14:41] 2025-10-12 22:14:03,476 | INFO     | monitor loop #306: job 0:6840713278 is in state 'finished'
[2025-10-12 18:14:41] 2025-10-12 22:14:03,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:14:41] 2025-10-12 22:14:04,078 | INFO     | time since job start (4120s) is within the limit (172800.0s)
[2025-10-12 18:14:41] 2025-10-12 22:14:05,979 | INFO     | monitor loop #307: job 0:6840713278 is in state 'finished'
[2025-10-12 18:14:41] 2025-10-12 22:14:05,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:14:41] 2025-10-12 22:14:06,084 | INFO     | time since job start (4122s) is within the limit (172800.0s)
[2025-10-12 18:14:41] 2025-10-12 22:14:08,090 | INFO     | time since job start (4124s) is within the limit (172800.0s)
[2025-10-12 18:14:41] 2025-10-12 22:14:08,369 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 18:14:41] 2025-10-12 22:14:08,373 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 18:14:41] 2025-10-12 22:14:08,375 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840713278/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:14:41] 2025-10-12 22:14:08,376 | INFO     | extracted standard info from prmon json
[2025-10-12 18:14:41] 2025-10-12 22:14:08,376 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:14:41] 2025-10-12 22:14:08,376 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:14:41] 2025-10-12 22:14:08,376 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:14:41] 2025-10-12 22:14:08,376 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:14:41] 2025-10-12 22:14:08,378 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:14:41] 2025-10-12 22:14:08,378 | INFO     | sum of square deviations: 66959395.0
[2025-10-12 18:14:41] 2025-10-12 22:14:08,378 | INFO     | sum of deviations: -1725690793.0
[2025-10-12 18:14:41] 2025-10-12 22:14:08,378 | INFO     | mean x: 1760305257.5
[2025-10-12 18:14:41] 2025-10-12 22:14:08,378 | INFO     | mean y: 2692709.8333333335
[2025-10-12 18:14:41] 2025-10-12 22:14:08,378 | INFO     | -- intersect: 45369628533.21173
[2025-10-12 18:14:41] 2025-10-12 22:14:08,379 | INFO     | intersect: 45369628533.21173
[2025-10-12 18:14:41] 2025-10-12 22:14:08,379 | INFO     | chi2: 0.036551646324989556
[2025-10-12 18:14:41] 2025-10-12 22:14:08,379 | INFO     | -- intersect: 45369628533.21173
[2025-10-12 18:14:41] 2025-10-12 22:14:08,379 | INFO     | current memory leak: -25.77 B/s (using 60 data points, chi2=0.04)
[2025-10-12 18:14:41] 2025-10-12 22:14:08,379 | INFO     | could have reported an average CPU frequency of 2036 MHz (6 samples)
[2025-10-12 18:14:41] 2025-10-12 22:14:08,379 | INFO     | ..............................
[2025-10-12 18:14:41] 2025-10-12 22:14:08,380 | INFO     | . Timing measurements:
[2025-10-12 18:14:41] 2025-10-12 22:14:08,380 | INFO     | . get job = 0 s
[2025-10-12 18:14:41] 2025-10-12 22:14:08,380 | INFO     | . initial setup = 2 s
[2025-10-12 18:14:41] 2025-10-12 22:14:08,380 | INFO     | . payload setup = 6 s
[2025-10-12 18:14:41] 2025-10-12 22:14:08,380 | INFO     | . stage-in = 0 s
[2025-10-12 18:14:41] 2025-10-12 22:14:08,380 | INFO     | . payload execution = 4084 s
[2025-10-12 18:14:41] 2025-10-12 22:14:08,380 | INFO     | . stage-out = 0 s
[2025-10-12 18:14:41] 2025-10-12 22:14:08,380 | INFO     | . log creation = 0 s
[2025-10-12 18:14:41] 2025-10-12 22:14:08,380 | INFO     | ..............................
[2025-10-12 18:14:41] 2025-10-12 22:14:08,462 | INFO     | 
[2025-10-12 18:14:41] 2025-10-12 22:14:08,463 | INFO     | job summary report
[2025-10-12 18:14:41] 2025-10-12 22:14:08,463 | INFO     | --------------------------------------------------
[2025-10-12 18:14:41] 2025-10-12 22:14:08,463 | INFO     | PanDA job id: 6840713278
[2025-10-12 18:14:41] 2025-10-12 22:14:08,463 | INFO     | task id: 46676269
[2025-10-12 18:14:41] 2025-10-12 22:14:08,463 | INFO     | errors: (none)
[2025-10-12 18:14:41] 2025-10-12 22:14:08,463 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:14:41] 2025-10-12 22:14:08,464 | INFO     | pilot state: finished 
[2025-10-12 18:14:41] 2025-10-12 22:14:08,464 | INFO     | transexitcode: 0
[2025-10-12 18:14:41] 2025-10-12 22:14:08,464 | INFO     | exeerrorcode: 0
[2025-10-12 18:14:41] 2025-10-12 22:14:08,464 | INFO     | exeerrordiag: 
[2025-10-12 18:14:41] 2025-10-12 22:14:08,464 | INFO     | exitcode: 0
[2025-10-12 18:14:41] 2025-10-12 22:14:08,464 | INFO     | exitmsg: OK
[2025-10-12 18:14:41] 2025-10-12 22:14:08,464 | INFO     | cpuconsumptiontime: 44190 s
[2025-10-12 18:14:41] 2025-10-12 22:14:08,464 | INFO     | nevents: 400
[2025-10-12 18:14:41] 2025-10-12 22:14:08,464 | INFO     | neventsw: 0
[2025-10-12 18:14:41] 2025-10-12 22:14:08,464 | INFO     | pid: 8700
[2025-10-12 18:14:41] 2025-10-12 22:14:08,465 | INFO     | pgrp: 8700
[2025-10-12 18:14:41] 2025-10-12 22:14:08,465 | INFO     | corecount: 12
[2025-10-12 18:14:41] 2025-10-12 22:14:08,465 | INFO     | event service: False
[2025-10-12 18:14:41] 2025-10-12 22:14:08,465 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 11: 2349203, 4095: 2375071, 4097: 2384069, 4099: 2384253, 4108: 2384475}
[2025-10-12 18:14:41] 2025-10-12 22:14:08,465 | INFO     | --------------------------------------------------
[2025-10-12 18:14:41] 2025-10-12 22:14:08,465 | INFO     | 
[2025-10-12 18:14:41] 2025-10-12 22:14:08,465 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 18:14:41] 2025-10-12 22:14:08,491 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,491 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,491 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,491 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,491 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,492 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,492 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,492 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,492 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,492 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,492 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,493 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,493 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,493 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,493 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,493 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,493 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,494 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:14:41] 2025-10-12 22:14:08,494 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,494 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:14:41] 2025-10-12 22:14:08,494 | INFO     | job 6840713278 has completed (purged errors)
[2025-10-12 18:14:41] 2025-10-12 22:14:08,494 | INFO     | overall cleanup function is called
[2025-10-12 18:14:41] 2025-10-12 22:14:09,502 | INFO     | --- collectZombieJob: --- 10, [8700]
[2025-10-12 18:14:41] 2025-10-12 22:14:09,502 | INFO     | zombie collector waiting for pid 8700
[2025-10-12 18:14:41] 2025-10-12 22:14:09,503 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:14:41] 2025-10-12 22:14:09,503 | INFO     | collected zombie processes
[2025-10-12 18:14:41] 2025-10-12 22:14:09,503 | INFO     | will attempt to kill all subprocesses of pid=8700
[2025-10-12 18:14:41] 2025-10-12 22:14:09,596 | INFO     | process IDs to be killed: [8700] (in reverse order)
[2025-10-12 18:14:41] 2025-10-12 22:14:09,649 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:14:41] 2025-10-12 22:14:09,650 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:14:41] 2025-10-12 22:14:09,652 | INFO     | did not find any defunct processes belonging to 8700
[2025-10-12 18:14:41] 2025-10-12 22:14:09,655 | INFO     | did not find any defunct processes belonging to 8700
[2025-10-12 18:14:41] 2025-10-12 22:14:09,655 | INFO     | ready for new job
[2025-10-12 18:14:41] 2025-10-12 22:14:09,655 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:14:41] 2025-10-12 22:14:09,657 | INFO     | ***************************************
[2025-10-12 18:14:41] 2025-10-12 22:14:09,657 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:14:41] 2025-10-12 22:14:09,657 | INFO     | ***************************************
[2025-10-12 18:14:41] 2025-10-12 22:14:09,657 | INFO     | 
[2025-10-12 18:14:41] 2025-10-12 22:14:09,657 | INFO     | architecture information:
[2025-10-12 18:14:41] 2025-10-12 22:14:09,658 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:14:41] 2025-10-12 22:14:09,673 | INFO     | cat /etc/os-release:
[2025-10-12 18:14:41] NAME="CentOS Linux"
[2025-10-12 18:14:41] VERSION="7 (Core)"
[2025-10-12 18:14:41] ID="centos"
[2025-10-12 18:14:41] ID_LIKE="rhel fedora"
[2025-10-12 18:14:41] VERSION_ID="7"
[2025-10-12 18:14:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:14:41] ANSI_COLOR="0;31"
[2025-10-12 18:14:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:14:41] HOME_URL="https://www.centos.org/"
[2025-10-12 18:14:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:14:41] 
[2025-10-12 18:14:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:14:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:14:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:14:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:14:41] 
[2025-10-12 18:14:41] 2025-10-12 22:14:09,673 | INFO     | ***************************************
[2025-10-12 18:14:41] 2025-10-12 22:14:10,176 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 18:14:41] 2025-10-12 22:14:10,194 | INFO     | sufficient remaining disk space (29371662336 B)
[2025-10-12 18:14:41] 2025-10-12 22:14:10,194 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:14:41] 2025-10-12 22:14:10,195 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:14:41] 2025-10-12 22:14:10,195 | INFO     | update_server=False
[2025-10-12 18:14:41] 2025-10-12 22:14:10,195 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:14:41] 2025-10-12 22:14:10,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:14:41] 2025-10-12 22:14:10,195 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:14:41] 2025-10-12 22:14:10,196 | INFO     | aborting loop
[2025-10-12 18:14:41] 2025-10-12 22:14:10,398 | INFO     | all data control threads have been joined
[2025-10-12 18:14:41] 2025-10-12 22:14:10,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:14:41] 2025-10-12 22:14:10,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:14:41] 2025-10-12 22:14:11,199 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:11,201 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:11,201 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:11,303 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:11,348 | INFO     | all payload control threads have been joined
[2025-10-12 18:14:41] 2025-10-12 22:14:11,403 | INFO     | [data] control thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:11,710 | INFO     | all job control threads have been joined
[2025-10-12 18:14:41] 2025-10-12 22:14:11,740 | INFO     | [job] validate thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:11,818 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:11,846 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:12,152 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:12,205 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:12,353 | INFO     | [payload] control thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:12,669 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:12,700 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:12,715 | INFO     | [job] control thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:14,643 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:20,328 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:14:41] 2025-10-12 22:14:21,333 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:14:41] 2025-10-12 22:14:30,641 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:14:41] 2025-10-12 22:14:31,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140301221996352)>', '<ExcThread(monitor, started 140300181817088)>']
[2025-10-12 18:14:41] 2025-10-12 22:14:36,040 | INFO     | all workflow threads have been joined
[2025-10-12 18:14:41] 2025-10-12 22:14:36,045 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:14:41] 2025-10-12 22:14:36,046 | INFO     | traces error code: 0
[2025-10-12 18:14:41] 2025-10-12 22:14:36,046 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:14:41] 2025-10-12 22:14:41,271 | INFO     | PID=2287 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 18:14:41] 2025-10-12 22:14:41,277 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:14:41] 2025-10-12 22:14:41,277 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:14:41] 2025-10-12 22:14:41,278 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:14:41] 2025-10-12 22:14:41,278 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:14:41] 2025-10-12 22:14:41,278 | INFO     | [monitor] control thread has ended
[2025-10-12 18:14:41] 2025-10-12 22:14:41,365 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:14:41] 2025-10-12 22:14:41,369 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:14:41] 2025-10-12 22:14:41,372 [wrapper] pilotpid: 2287
[2025-10-12 18:14:41] 2025-10-12 22:14:41,375 [wrapper] Pilot exit status: 0
[2025-10-12 18:14:41] 2025-10-12 22:14:41,390 [wrapper] pandaids: 6840713278
[2025-10-12 18:14:41] 2025-10-12 22:14:41,429 [wrapper] cleanup supervisor_pilot 15147 2288
[2025-10-12 18:14:41] 2025-10-12 22:14:41,433 [wrapper] Test setup, not cleaning
[2025-10-12 18:14:41] 2025-10-12 22:14:41,437 [wrapper] apfmon messages muted
[2025-10-12 18:14:41] 2025-10-12 22:14:41,440 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:14:41] 2025-10-12 22:14:41,444 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:14:41]  *** Error codes and diagnostics ***
[2025-10-12 18:14:41]     "exeErrorCode": 0,
[2025-10-12 18:14:41]     "exeErrorDiag": "",
[2025-10-12 18:14:41]     "pilotErrorCode": 0,
[2025-10-12 18:14:41]     "pilotErrorDiag": "",
[2025-10-12 18:14:41]  *** Listing of results directory ***
[2025-10-12 18:14:41] total 403948
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 15:28 pilot3.tar.gz
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 15:35 queuedata.json
[2025-10-12 18:14:41] -rwx------ 1 boincer umatlas     36292 Oct 12 15:35 runpilot2-wrapper.sh
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas       100 Oct 12 17:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:14:41] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 17:05 run_atlas
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas       105 Oct 12 17:05 job.xml
[2025-10-12 18:14:41] -rw-r--r-- 2 boincer umatlas 218433266 Oct 12 17:05 EVNT.46676267._004458.pool.root.1
[2025-10-12 18:14:41] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:05 start_atlas.sh
[2025-10-12 18:14:41] drwxrwx--x 2 boincer umatlas      4096 Oct 12 17:05 shared
[2025-10-12 18:14:41] -rw-r--r-- 2 boincer umatlas    569686 Oct 12 17:05 input.tar.gz
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas         0 Oct 12 17:05 boinc_lockfile
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 17:05 pandaJob.out
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas    975536 Oct 12 17:05 agis_schedconf.cvmfs.json
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas   1560580 Oct 12 17:05 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:14:41] drwx------ 5 boincer umatlas      4096 Oct 12 17:05 pilot3
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 18:12 init_data.xml
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas 189326717 Oct 12 18:13 HITS.46676269._087600.pool.root.1
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas      1050 Oct 12 18:13 memory_monitor_summary.json
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas       529 Oct 12 18:13 boinc_task_state.xml
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas    388827 Oct 12 18:13 log.46676269._087600.job.log.tgz.1
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas      7855 Oct 12 18:14 heartbeat.json
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas        27 Oct 12 18:14 wrapper_checkpoint.txt
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 18:14 boinc_mmap_file
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas        95 Oct 12 18:14 pilot_heartbeat.json
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas       744 Oct 12 18:14 pilotlog.txt
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas    601560 Oct 12 18:14 log.46676269._087600.job.log.1
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas       357 Oct 12 18:14 output.list
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas       620 Oct 12 18:14 runtime_log
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas   1013760 Oct 12 18:14 result.tar.gz
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 18:14 runtime_log.err
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas       659 Oct 12 18:14 qQsKDmM2GS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEIlNDmEHT5Wo.diag
[2025-10-12 18:14:41] -rw-r--r-- 1 boincer umatlas     22400 Oct 12 18:14 stderr.txt
[2025-10-12 18:14:41] HITS file was successfully produced:
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas 189326717 Oct 12 18:13 shared/HITS.pool.root.1
[2025-10-12 18:14:41]  *** Contents of shared directory: ***
[2025-10-12 18:14:41] total 399780
[2025-10-12 18:14:41] -rw-r--r-- 2 boincer umatlas 218433266 Oct 12 17:05 ATLAS.root_0
[2025-10-12 18:14:41] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 17:05 start_atlas.sh
[2025-10-12 18:14:41] -rw-r--r-- 2 boincer umatlas    569686 Oct 12 17:05 input.tar.gz
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas 189326717 Oct 12 18:13 HITS.pool.root.1
[2025-10-12 18:14:41] -rw------- 1 boincer umatlas   1013760 Oct 12 18:14 result.tar.gz
18:14:43 (30642): run_atlas exited; CPU time 44161.794885
18:14:43 (30642): called boinc_finish(0)

</stderr_txt>
]]>

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