Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 00:59:38 (308460): vboxwrapper version 26210
2025-10-13 00:59:38 (308460): BOINC client version: 8.2.4
2025-10-13 00:59:38 (308460): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-13 00:59:38 (308460): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 00:59:38 (308460): Create VM. (boinc_c7aadd8dcab4dcf3, slot#3)
2025-10-13 00:59:38 (308460): Setting Memory Size for VM. (4800MB)
2025-10-13 00:59:39 (308460): Setting CPU Count for VM. (8)
2025-10-13 00:59:39 (308460): Setting Chipset Options for VM.
2025-10-13 00:59:39 (308460): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 00:59:39 (308460): Setting Boot Options for VM.
2025-10-13 00:59:39 (308460): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 00:59:39 (308460): Enabling VM Network Access.
2025-10-13 00:59:39 (308460): Disabling USB Support for VM.
2025-10-13 00:59:39 (308460): Disabling COM Port Support for VM.
2025-10-13 00:59:39 (308460): Disabling LPT Port Support for VM.
2025-10-13 00:59:39 (308460): Disabling Audio Support for VM.
2025-10-13 00:59:39 (308460): Disabling Clipboard Support for VM.
2025-10-13 00:59:39 (308460): Disabling Drag and Drop Support for VM.
2025-10-13 00:59:39 (308460): Adding storage controller(s) to VM.
2025-10-13 00:59:39 (308460): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 00:59:39 (308460): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 00:59:39 (308460): forwarding host port 33401 to guest port 80
2025-10-13 00:59:39 (308460): Enabling remote desktop for VM.
2025-10-13 00:59:39 (308460): Required extension pack not installed, remote desktop not enabled.
2025-10-13 00:59:39 (308460): Enabling shared directory for VM.
2025-10-13 00:59:39 (308460): Starting VM using VBoxManage interface. (boinc_c7aadd8dcab4dcf3, slot#3)
2025-10-13 00:59:40 (308460): Successfully started VM. (PID = '308925')
2025-10-13 00:59:40 (308460): Reporting VM Process ID to BOINC.
2025-10-13 00:59:40 (308460): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-13 00:59:40 (308460): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 00:59:40 (308460): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 00:59:40 (308460): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 00:59:40 (308460): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 00:59:40 (308460): Detected: Web Application Enabled (http://localhost:33401)
2025-10-13 00:59:40 (308460): Preference change detected
2025-10-13 00:59:40 (308460): Setting CPU throttle for VM. (50%)
2025-10-13 00:59:40 (308460): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 00:59:42 (308460): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 00:59:42 (308460): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 00:59:45 (308460): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 00:59:45 (308460): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 00:59:45 (308460): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 00:59:54 (308460): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 00:59:54 (308460): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 01:00:00 (308460): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 01:00:00 (308460): Guest Log: 00:00:00.000156 main     Log opened 2025-10-13T04:59:59.229612000Z
2025-10-13 01:00:00 (308460): Guest Log: 00:00:00.000266 main     OS Product: Linux
2025-10-13 01:00:00 (308460): Guest Log: 00:00:00.000299 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 01:00:00 (308460): Guest Log: 00:00:00.000324 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 01:00:00 (308460): Guest Log: 00:00:00.000348 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 01:00:00 (308460): Guest Log: 00:00:00.000349 main     Process ID: 1367
2025-10-13 01:00:00 (308460): Guest Log: 00:00:00.000350 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 01:00:00 (308460): Guest Log: 00:00:00.001002 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 01:00:01 (308460): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 01:00:01 (308460): Guest Log: [INFO] Mounting shared directory
2025-10-13 01:00:01 (308460): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 01:00:03 (308460): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 01:00:03 (308460): Guest Log: [INFO] Detected branch: prod
2025-10-13 01:00:03 (308460): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 01:00:03 (308460): Guest Log: Copying input files
2025-10-13 01:00:04 (308460): Guest Log: Copied input files into RunAtlas.
2025-10-13 01:00:04 (308460): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 01:00:04 (308460): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 01:00:04 (308460): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 01:00:04 (308460): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 01:00:12 (308460): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 01:00:13 (308460): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 01:00:13 (308460): Guest Log: 2.6.3.0 1649 0 30192 151649 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 01:00:13 (308460): Guest Log: copied the webapp to /var/www
2025-10-13 01:00:14 (308460): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-13 01:00:14 (308460): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-13 01:00:14 (308460): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 01:00:14 (308460): Guest Log:  *** Starting ATLAS job. (PandaID=6840081032 taskID=46676269) ***
2025-10-13 02:38:41 (308460): Status Report: Elapsed Time: '6000.000000'
2025-10-13 02:38:41 (308460): Status Report: CPU Time: '22899.180000'
2025-10-13 02:50:27 (308460): Guest Log:  *** Job finished ***
2025-10-13 02:50:27 (308460): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:03,513 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:03,513 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:20,039 | INFO     | [monitor] cgroup control has ended
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:20,522 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274234177344)>', '<ExcThread(monitor, started 140273489274624)>']
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:20,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:20,531 | INFO     | [monitor] control thread has ended
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,527 | INFO     | all workflow threads have been joined
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,527 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,527 | INFO     | traces error code: 0
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,527 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,595 [wrapper] ==== pilot stdout END ====
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,598 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,601 [wrapper] pilotpid: 6076
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,604 [wrapper] Pilot exit status: 0
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,698 [wrapper] pandaids: 6840081032
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,717 [wrapper] cleanup supervisor_pilot  4143 6077
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,720 [wrapper] Test setup, not cleaning
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,723 [wrapper] apfmon messages muted
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,726 [wrapper] ==== wrapper stdout END ====
2025-10-13 02:50:27 (308460): Guest Log: 2025-10-13 06:50:25,729 [wrapper] ==== wrapper stderr END ====
2025-10-13 02:50:27 (308460): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 02:50:27 (308460): Guest Log:     "exeErrorCode": 0,
2025-10-13 02:50:27 (308460): Guest Log:     "exeErrorDiag": "",
2025-10-13 02:50:27 (308460): Guest Log:     "pilotErrorCode": 1305,
2025-10-13 02:50:27 (308460): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
2025-10-13 02:50:27 (308460): Guest Log:  *** Listing of results directory ***
2025-10-13 02:50:27 (308460): Guest Log: total 5888
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 atlas atlas  557409 Oct 12 13:22 pilot3.tar.gz
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Oct 12 13:22 queuedata.json
2025-10-13 02:50:27 (308460): Guest Log: -rwx------. 1 atlas atlas   36292 Oct 12 13:22 runpilot2-wrapper.sh
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 atlas atlas   15120 Oct 13 05:00 start_atlas.sh
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 atlas atlas    8661 Oct 13 05:00 init_data.xml
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 atlas atlas  569681 Oct 13 05:00 input.tar.gz
2025-10-13 02:50:27 (308460): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Oct 13 05:00 EVNT.46676267._003863.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 atlas atlas    2550 Oct 13 05:00 pandaJob.out
2025-10-13 02:50:27 (308460): Guest Log: -rw-------. 1 atlas atlas  974365 Oct 13 05:01 agis_schedconf.cvmfs.json
2025-10-13 02:50:27 (308460): Guest Log: -rw-------. 1 atlas atlas 1560580 Oct 13 05:01 agis_ddmendpoints.agis.ALL.json
2025-10-13 02:50:27 (308460): Guest Log: drwx------. 5 atlas atlas    4096 Oct 13 05:01 pilot3
2025-10-13 02:50:27 (308460): Guest Log: -rw-------. 1 atlas atlas    1033 Oct 13 06:47 memory_monitor_summary.json
2025-10-13 02:50:27 (308460): Guest Log: -rw-------. 1 atlas atlas  339539 Oct 13 06:47 log.46676269._079404.job.log.tgz.1
2025-10-13 02:50:27 (308460): Guest Log: -rw-------. 1 atlas atlas      95 Oct 13 06:49 pilot_heartbeat.json
2025-10-13 02:50:27 (308460): Guest Log: -rw-------. 1 atlas atlas    9774 Oct 13 06:49 heartbeat.json
2025-10-13 02:50:27 (308460): Guest Log: -rw-------. 1 atlas atlas    4805 Oct 13 06:50 pilotlog.txt
2025-10-13 02:50:27 (308460): Guest Log: -rw-------. 1 atlas atlas  758205 Oct 13 06:50 log.46676269._079404.job.log.1
2025-10-13 02:50:27 (308460): Guest Log: -rw-------. 1 atlas atlas     188 Oct 13 06:50 output.list
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 atlas atlas     620 Oct 13 06:50 runtime_log
2025-10-13 02:50:27 (308460): Guest Log: -rw-------. 1 atlas atlas 1116160 Oct 13 06:50 result.tar.gz
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 atlas atlas    8511 Oct 13 06:50 runtime_log.err
2025-10-13 02:50:27 (308460): Guest Log: -rw-------. 1 atlas atlas     663 Oct 13 06:50 HtpLDmRDBS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5zjNDmfVefen.diag
2025-10-13 02:50:27 (308460): Guest Log: Looking for outputfile HITS.46676269._079404.pool.root.1
2025-10-13 02:50:27 (308460): Guest Log: No HITS file was produced
2025-10-13 02:50:27 (308460): Guest Log: Successfully finished the ATLAS job!
2025-10-13 02:50:27 (308460): Guest Log: Copying the results back to the shared directory!
2025-10-13 02:50:27 (308460): Guest Log:  *** Contents of shared directory: ***
2025-10-13 02:50:27 (308460): Guest Log: total 216572
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 root root 220044604 Oct 13 04:59 ATLAS.root_0
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 root root      8661 Oct 13 04:59 init_data.xml
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 root root    569681 Oct 13 04:59 input.tar.gz
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 root root   1116160 Oct 13 06:50 result.tar.gz
2025-10-13 02:50:27 (308460): Guest Log: -rw-r--r--. 1 root root     15120 Oct 13 04:59 start_atlas.sh
2025-10-13 02:50:27 (308460): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 02:50:27 (308460): VM Completion File Detected.
2025-10-13 02:50:27 (308460): Powering off VM.
2025-10-13 02:50:27 (308460): Successfully stopped VM.
2025-10-13 02:50:27 (308460): Deregistering VM. (boinc_c7aadd8dcab4dcf3, slot#3)
2025-10-13 02:50:27 (308460): Removing network bandwidth throttle group from VM.
2025-10-13 02:50:27 (308460): Removing VM from VirtualBox.
2025-10-13 02:50:32 (308460): called boinc_finish(0)

</stderr_txt>
]]>

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