Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:20:06 (952188): wrapper (7.7.26015): starting
19:20:06 (952188): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 19:20:06] Arguments: --nthreads 9
[2025-10-12 19:20:06] Threads: 9
[2025-10-12 19:20:06] Checking for CVMFS
[2025-10-12 19:20:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:20:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:20:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:20:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:20:07] 2.13.2.0 1395644 129896 450896 151640 2 554 18355268 32935937 19904 16776704 0 168725645 99.564 195271363 27990 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 19:20:07] CVMFS is ok
[2025-10-12 19:20:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:20:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:20:07] Further information can be found at the LHC@home message board.
[2025-10-12 19:20:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:20:07] Checking for apptainer binary...
[2025-10-12 19:20:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:20:07] Running /usr/bin/apptainer --version
[2025-10-12 19:20:07] apptainer version 1.4.3-1.el9
[2025-10-12 19:20:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:20:08] c6-6-39-2.aglt2.org
[2025-10-12 19:20:08] apptainer works
[2025-10-12 19:20:08] Set ATHENA_PROC_NUMBER=9
[2025-10-12 19:20:08] Set ATHENA_CORE_NUMBER=9
[2025-10-12 19:20:08] Starting ATLAS job with PandaID=6840712976
[2025-10-12 19:20:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:33:08]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:33:08] 2025-10-13 01:32:34,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:33:08] 2025-10-13 01:32:35,065 | INFO     | PID=956939 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:33:08] 2025-10-13 01:32:35,065 | INFO     | .. there are 30 such processes running
[2025-10-12 21:33:08] 2025-10-13 01:32:35,447 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 21:33:08] 2025-10-13 01:32:35,451 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2889.279642857143
[2025-10-12 21:33:08] 2025-10-13 01:32:35,463 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6840712976/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:33:08] 2025-10-13 01:32:35,464 | INFO     | extracted standard info from prmon json
[2025-10-12 21:33:08] 2025-10-13 01:32:35,464 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:33:08] 2025-10-13 01:32:35,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:33:08] 2025-10-13 01:32:35,465 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:33:08] 2025-10-13 01:32:35,465 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:33:08] 2025-10-13 01:32:35,467 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:33:08] 2025-10-13 01:32:35,467 | INFO     | sum of square deviations: 665740008.2015498
[2025-10-12 21:33:08] 2025-10-13 01:32:35,468 | INFO     | sum of deviations: 9961413501.240326
[2025-10-12 21:33:08] 2025-10-13 01:32:35,468 | INFO     | mean x: 1760315217.4806201
[2025-10-12 21:33:08] 2025-10-13 01:32:35,468 | INFO     | mean y: 2212562.496124031
[2025-10-12 21:33:08] 2025-10-13 01:32:35,468 | INFO     | -- intersect: -26337240614.1583
[2025-10-12 21:33:08] 2025-10-13 01:32:35,468 | INFO     | intersect: -26337240614.1583
[2025-10-12 21:33:08] 2025-10-13 01:32:35,468 | INFO     | chi2: 2.6693303524459404
[2025-10-12 21:33:08] 2025-10-13 01:32:35,469 | INFO     | sum of square deviations: 591296946.9274185
[2025-10-12 21:33:08] 2025-10-13 01:32:35,469 | INFO     | sum of deviations: 16881000875.451597
[2025-10-12 21:33:08] 2025-10-13 01:32:35,469 | INFO     | mean x: 1760315064.9758065
[2025-10-12 21:33:08] 2025-10-13 01:32:35,470 | INFO     | mean y: 2226286.4838709678
[2025-10-12 21:33:08] 2025-10-13 01:32:35,470 | INFO     | -- intersect: -50253200039.22459
[2025-10-12 21:33:08] 2025-10-13 01:32:35,470 | INFO     | intersect: -50253200039.22459
[2025-10-12 21:33:08] 2025-10-13 01:32:35,470 | INFO     | chi2: 2.0073658239343897
[2025-10-12 21:33:08] 2025-10-13 01:32:35,470 | INFO     | current chi2=2.0073658239343897 (change=24.79889864156321 %)
[2025-10-12 21:33:08] 2025-10-13 01:32:35,470 | INFO     | right removable region: 123
[2025-10-12 21:33:08] 2025-10-13 01:32:35,472 | INFO     | sum of square deviations: 591282492.0
[2025-10-12 21:33:08] 2025-10-13 01:32:35,473 | INFO     | sum of deviations: -12426288655.0
[2025-10-12 21:33:08] 2025-10-13 01:32:35,473 | INFO     | mean x: 1760315370.0
[2025-10-12 21:33:08] 2025-10-13 01:32:35,474 | INFO     | mean y: 2257932.9758064514
[2025-10-12 21:33:08] 2025-10-13 01:32:35,474 | INFO     | -- intersect: 36996735542.93204
[2025-10-12 21:33:08] 2025-10-13 01:32:35,474 | INFO     | intersect: 36996735542.93204
[2025-10-12 21:33:08] 2025-10-13 01:32:35,474 | INFO     | chi2: 0.8283367927722022
[2025-10-12 21:33:08] 2025-10-13 01:32:35,474 | INFO     | current chi2=0.8283367927722022 (change=68.96836721565066 %)
[2025-10-12 21:33:08] 2025-10-13 01:32:35,474 | INFO     | sum of square deviations: 522600089.7310928
[2025-10-12 21:33:08] 2025-10-13 01:32:35,475 | INFO     | sum of deviations: -16465794097.529417
[2025-10-12 21:33:08] 2025-10-13 01:32:35,475 | INFO     | mean x: 1760315522.512605
[2025-10-12 21:33:08] 2025-10-13 01:32:35,475 | INFO     | mean y: 2266792.3529411764
[2025-10-12 21:33:08] 2025-10-13 01:32:35,475 | INFO     | -- intersect: 55465313029.662
[2025-10-12 21:33:08] 2025-10-13 01:32:35,475 | INFO     | intersect: 55465313029.662
[2025-10-12 21:33:08] 2025-10-13 01:32:35,475 | INFO     | chi2: 0.7310342207326653
[2025-10-12 21:33:08] 2025-10-13 01:32:35,475 | INFO     | current chi2=0.7310342207326653 (change=11.746740322121084 %)
[2025-10-12 21:33:08] 2025-10-13 01:32:35,475 | INFO     | left removable region: 20
[2025-10-12 21:33:08] 2025-10-13 01:32:35,476 | INFO     | sum of square deviations: 338867229.5533982
[2025-10-12 21:33:08] 2025-10-13 01:32:35,476 | INFO     | sum of deviations: -7640063399.126212
[2025-10-12 21:33:08] 2025-10-13 01:32:35,476 | INFO     | mean x: 1760315644.5436893
[2025-10-12 21:33:08] 2025-10-13 01:32:35,476 | INFO     | mean y: 2280408.805825243
[2025-10-12 21:33:08] 2025-10-13 01:32:35,476 | INFO     | -- intersect: 39690163903.80234
[2025-10-12 21:33:08] 2025-10-13 01:32:35,476 | INFO     | intersect: 39690163903.80234
[2025-10-12 21:33:08] 2025-10-13 01:32:35,476 | INFO     | chi2: 0.03517875160095369
[2025-10-12 21:33:08] 2025-10-13 01:32:35,477 | INFO     | -- intersect: 39690163903.80234
[2025-10-12 21:33:08] 2025-10-13 01:32:35,477 | INFO     | current memory leak: -22.55 B/s (using 103 data points, chi2=0.04)
[2025-10-12 21:33:08] 2025-10-13 01:32:35,477 | INFO     | could have reported an average CPU frequency of 2848 MHz (8 samples)
[2025-10-12 21:33:08] 2025-10-13 01:32:35,478 | INFO     | ..............................
[2025-10-12 21:33:08] 2025-10-13 01:32:35,478 | INFO     | . Timing measurements:
[2025-10-12 21:33:08] 2025-10-13 01:32:35,478 | INFO     | . get job = 0 s
[2025-10-12 21:33:08] 2025-10-13 01:32:35,478 | INFO     | . initial setup = 3 s
[2025-10-12 21:33:08] 2025-10-13 01:32:35,478 | INFO     | . payload setup = 19 s
[2025-10-12 21:33:08] 2025-10-13 01:32:35,478 | INFO     | . stage-in = 0 s
[2025-10-12 21:33:08] 2025-10-13 01:32:35,478 | INFO     | . payload execution = 7851 s
[2025-10-12 21:33:08] 2025-10-13 01:32:35,478 | INFO     | . stage-out = 1 s
[2025-10-12 21:33:08] 2025-10-13 01:32:35,478 | INFO     | . log creation = 0 s
[2025-10-12 21:33:08] 2025-10-13 01:32:35,478 | INFO     | ..............................
[2025-10-12 21:33:08] 2025-10-13 01:32:35,592 | INFO     | 
[2025-10-12 21:33:08] 2025-10-13 01:32:35,593 | INFO     | job summary report
[2025-10-12 21:33:08] 2025-10-13 01:32:35,593 | INFO     | --------------------------------------------------
[2025-10-12 21:33:08] 2025-10-13 01:32:35,593 | INFO     | PanDA job id: 6840712976
[2025-10-12 21:33:08] 2025-10-13 01:32:35,593 | INFO     | task id: 46676269
[2025-10-12 21:33:08] 2025-10-13 01:32:35,593 | INFO     | errors: (none)
[2025-10-12 21:33:08] 2025-10-13 01:32:35,593 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:33:08] 2025-10-13 01:32:35,593 | INFO     | pilot state: finished 
[2025-10-12 21:33:08] 2025-10-13 01:32:35,593 | INFO     | transexitcode: 0
[2025-10-12 21:33:08] 2025-10-13 01:32:35,593 | INFO     | exeerrorcode: 0
[2025-10-12 21:33:08] 2025-10-13 01:32:35,593 | INFO     | exeerrordiag: 
[2025-10-12 21:33:08] 2025-10-13 01:32:35,593 | INFO     | exitcode: 0
[2025-10-12 21:33:08] 2025-10-13 01:32:35,594 | INFO     | exitmsg: OK
[2025-10-12 21:33:08] 2025-10-13 01:32:35,594 | INFO     | cpuconsumptiontime: 40834 s
[2025-10-12 21:33:08] 2025-10-13 01:32:35,594 | INFO     | nevents: 400
[2025-10-12 21:33:08] 2025-10-13 01:32:35,594 | INFO     | neventsw: 0
[2025-10-12 21:33:08] 2025-10-13 01:32:35,594 | INFO     | pid: 968028
[2025-10-12 21:33:08] 2025-10-13 01:32:35,594 | INFO     | pgrp: 968028
[2025-10-12 21:33:08] 2025-10-13 01:32:35,594 | INFO     | corecount: 9
[2025-10-12 21:33:08] 2025-10-13 01:32:35,594 | INFO     | event service: False
[2025-10-12 21:33:08] 2025-10-13 01:32:35,594 | INFO     | sizes: {0: 2348856, 1: 2348856, 12: 2349174, 22: 2349174, 7875: 2376912, 7876: 2385910, 7877: 2386094, 7884: 2386288}
[2025-10-12 21:33:08] 2025-10-13 01:32:35,594 | INFO     | --------------------------------------------------
[2025-10-12 21:33:08] 2025-10-13 01:32:35,594 | INFO     | 
[2025-10-12 21:33:08] 2025-10-13 01:32:35,594 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 21:33:08] 2025-10-13 01:32:35,619 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,619 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,619 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,619 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,619 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:33:08] 2025-10-13 01:32:35,620 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,621 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:33:08] 2025-10-13 01:32:35,621 | INFO     | job 6840712976 has completed (purged errors)
[2025-10-12 21:33:08] 2025-10-13 01:32:35,621 | INFO     | overall cleanup function is called
[2025-10-12 21:33:08] 2025-10-13 01:32:36,635 | INFO     | --- collectZombieJob: --- 10, [968028]
[2025-10-12 21:33:08] 2025-10-13 01:32:36,636 | INFO     | zombie collector waiting for pid 968028
[2025-10-12 21:33:08] 2025-10-13 01:32:36,636 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:33:08] 2025-10-13 01:32:36,636 | INFO     | collected zombie processes
[2025-10-12 21:33:08] 2025-10-13 01:32:36,636 | INFO     | will attempt to kill all subprocesses of pid=968028
[2025-10-12 21:33:08] 2025-10-13 01:32:36,933 | INFO     | process IDs to be killed: [968028] (in reverse order)
[2025-10-12 21:33:08] 2025-10-13 01:32:37,044 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:33:08] 2025-10-13 01:32:37,044 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:33:08] 2025-10-13 01:32:37,089 | INFO     | did not find any defunct processes belonging to 968028
[2025-10-12 21:33:08] 2025-10-13 01:32:37,121 | INFO     | did not find any defunct processes belonging to 968028
[2025-10-12 21:33:08] 2025-10-13 01:32:37,121 | INFO     | ready for new job
[2025-10-12 21:33:08] 2025-10-13 01:32:37,121 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:33:08] 2025-10-13 01:32:37,124 | INFO     | ***************************************
[2025-10-12 21:33:08] 2025-10-13 01:32:37,124 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:33:08] 2025-10-13 01:32:37,125 | INFO     | ***************************************
[2025-10-12 21:33:08] 2025-10-13 01:32:37,126 | INFO     | 
[2025-10-12 21:33:08] 2025-10-13 01:32:37,140 | INFO     | architecture information:
[2025-10-12 21:33:08] 2025-10-13 01:32:37,141 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:33:08] 2025-10-13 01:32:37,158 | INFO     | cat /etc/os-release:
[2025-10-12 21:33:08] NAME="CentOS Linux"
[2025-10-12 21:33:08] VERSION="7 (Core)"
[2025-10-12 21:33:08] ID="centos"
[2025-10-12 21:33:08] ID_LIKE="rhel fedora"
[2025-10-12 21:33:08] VERSION_ID="7"
[2025-10-12 21:33:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:33:08] ANSI_COLOR="0;31"
[2025-10-12 21:33:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:33:08] HOME_URL="https://www.centos.org/"
[2025-10-12 21:33:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:33:08] 
[2025-10-12 21:33:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:33:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:33:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:33:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:33:08] 
[2025-10-12 21:33:08] 2025-10-13 01:32:37,158 | INFO     | ***************************************
[2025-10-12 21:33:08] 2025-10-13 01:32:37,662 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 21:33:08] 2025-10-13 01:32:37,682 | INFO     | sufficient remaining disk space (74837917696 B)
[2025-10-12 21:33:08] 2025-10-13 01:32:37,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:33:08] 2025-10-13 01:32:37,683 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:33:08] 2025-10-13 01:32:37,683 | INFO     | update_server=False
[2025-10-12 21:33:08] 2025-10-13 01:32:37,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:33:08] 2025-10-13 01:32:37,698 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:33:08] 2025-10-13 01:32:37,699 | INFO     | aborting loop
[2025-10-12 21:33:08] 2025-10-13 01:32:37,712 | INFO     | all job control threads have been joined
[2025-10-12 21:33:08] 2025-10-13 01:32:37,880 | INFO     | all data control threads have been joined
[2025-10-12 21:33:08] 2025-10-13 01:32:38,688 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:38,699 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:38,705 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:38,713 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:38,718 | INFO     | [job] control thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:38,887 | INFO     | [data] control thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:38,893 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:33:08] 2025-10-13 01:32:38,927 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:38,951 | INFO     | all payload control threads have been joined
[2025-10-12 21:33:08] 2025-10-13 01:32:39,055 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:39,076 | INFO     | [job] validate thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:39,273 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:33:08] 2025-10-13 01:32:39,408 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:39,656 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:39,701 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:39,957 | INFO     | [payload] control thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:40,622 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:33:08] 2025-10-13 01:32:40,901 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:41,637 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:43,282 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:33:08] 2025-10-13 01:32:48,702 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:33:08] 2025-10-13 01:32:49,003 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139790366476096)>', '<ExcThread(monitor, started 139790003447552)>']
[2025-10-12 21:33:08] 2025-10-13 01:32:54,034 | INFO     | all workflow threads have been joined
[2025-10-12 21:33:08] 2025-10-13 01:32:54,035 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:33:08] 2025-10-13 01:32:54,035 | INFO     | traces error code: 0
[2025-10-12 21:33:08] 2025-10-13 01:32:54,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:33:08] 2025-10-13 01:33:07,611 | INFO     | PID=956939 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 21:33:08] 2025-10-13 01:33:07,613 | INFO     | .. there are 30 such processes running
[2025-10-12 21:33:08] 2025-10-13 01:33:07,613 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:33:08] 2025-10-13 01:33:07,613 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:33:08] 2025-10-13 01:33:07,613 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:33:08] 2025-10-13 01:33:07,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:33:08] 2025-10-13 01:33:07,613 | INFO     | [monitor] control thread has ended
[2025-10-12 21:33:08] 2025-10-13 01:33:07,950 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:33:08] 2025-10-13 01:33:07,953 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:33:08] 2025-10-13 01:33:07,955 [wrapper] pilotpid: 956939
[2025-10-12 21:33:08] 2025-10-13 01:33:07,958 [wrapper] Pilot exit status: 0
[2025-10-12 21:33:08] 2025-10-13 01:33:07,978 [wrapper] pandaids: 6840712976
[2025-10-12 21:33:08] 2025-10-13 01:33:08,045 [wrapper] cleanup supervisor_pilot 1377027 956940
[2025-10-12 21:33:08] 2025-10-13 01:33:08,048 [wrapper] Test setup, not cleaning
[2025-10-12 21:33:08] 2025-10-13 01:33:08,051 [wrapper] apfmon messages muted
[2025-10-12 21:33:08] 2025-10-13 01:33:08,054 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:33:08] 2025-10-13 01:33:08,082 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:33:08]  *** Error codes and diagnostics ***
[2025-10-12 21:33:08]     "exeErrorCode": 0,
[2025-10-12 21:33:08]     "exeErrorDiag": "",
[2025-10-12 21:33:08]     "pilotErrorCode": 0,
[2025-10-12 21:33:08]     "pilotErrorDiag": "",
[2025-10-12 21:33:08]  *** Listing of results directory ***
[2025-10-12 21:33:08] total 411184
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 15:28 pilot3.tar.gz
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:29 queuedata.json
[2025-10-12 21:33:08] -rwx------. 1 boincer umatlas     36292 Oct 12 15:29 runpilot2-wrapper.sh
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas       100 Oct 12 19:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:33:08] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 19:20 run_atlas
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas       105 Oct 12 19:20 job.xml
[2025-10-12 21:33:08] -rw-r--r--. 2 boincer umatlas 222663440 Oct 12 19:20 EVNT.46676267._004454.pool.root.1
[2025-10-12 21:33:08] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 19:20 shared
[2025-10-12 21:33:08] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 19:20 input.tar.gz
[2025-10-12 21:33:08] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:20 start_atlas.sh
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas         0 Oct 12 19:20 boinc_lockfile
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 19:20 pandaJob.out
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas    975603 Oct 12 19:20 agis_schedconf.cvmfs.json
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas   1560580 Oct 12 19:20 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:33:08] drwx------. 5 boincer umatlas      4096 Oct 12 19:20 pilot3
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas      6840 Oct 12 21:27 init_data.xml
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas       530 Oct 12 21:31 boinc_task_state.xml
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas 191683959 Oct 12 21:31 HITS.46676269._087489.pool.root.1
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas      1042 Oct 12 21:32 memory_monitor_summary.json
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas    380162 Oct 12 21:32 log.46676269._087489.job.log.tgz.1
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas        95 Oct 12 21:32 pilot_heartbeat.json
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas      7828 Oct 12 21:32 heartbeat.json
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 21:33 boinc_mmap_file
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas        27 Oct 12 21:33 wrapper_checkpoint.txt
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas       822 Oct 12 21:33 pilotlog.txt
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas   1019731 Oct 12 21:33 log.46676269._087489.job.log.1
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas       357 Oct 12 21:33 output.list
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas       620 Oct 12 21:33 runtime_log
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas   1423360 Oct 12 21:33 result.tar.gz
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas      8708 Oct 12 21:33 runtime_log.err
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas       654 Oct 12 21:33 kasKDmHwGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaHlNDmXSnBXo.diag
[2025-10-12 21:33:08] -rw-r--r--. 1 boincer umatlas     21253 Oct 12 21:33 stderr.txt
[2025-10-12 21:33:08] HITS file was successfully produced:
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas 191683959 Oct 12 21:31 shared/HITS.pool.root.1
[2025-10-12 21:33:08]  *** Contents of shared directory: ***
[2025-10-12 21:33:08] total 406616
[2025-10-12 21:33:08] -rw-r--r--. 2 boincer umatlas 222663440 Oct 12 19:20 ATLAS.root_0
[2025-10-12 21:33:08] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 19:20 input.tar.gz
[2025-10-12 21:33:08] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 19:20 start_atlas.sh
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas 191683959 Oct 12 21:31 HITS.pool.root.1
[2025-10-12 21:33:08] -rw-------. 1 boincer umatlas   1423360 Oct 12 21:33 result.tar.gz
21:33:10 (952188): run_atlas exited; CPU time 41108.290539
21:33:10 (952188): called boinc_finish(0)

</stderr_txt>
]]>

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