Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
00:48:15 (2184164): wrapper (7.7.26015): starting
00:48:15 (2184164): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 00:48:15] Arguments: --nthreads 8
[2025-10-13 00:48:15] Threads: 8
[2025-10-13 00:48:15] Checking for CVMFS
[2025-10-13 00:48:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:48:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:48:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:48:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:48:18] 2.11.5.0 4319 285 167688 151640 3 188 2637014 4194304 18507 130560 0 3993978 99.999 12171 211 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-13 00:48:18] CVMFS is ok
[2025-10-13 00:48:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:48:18] Checking for apptainer binary...
[2025-10-13 00:48:18] apptainer is not installed, using version from CVMFS
[2025-10-13 00:48:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:48:19] mikemint-desktop
[2025-10-13 00:48:19] apptainer works
[2025-10-13 00:48:19] Set ATHENA_PROC_NUMBER=8
[2025-10-13 00:48:19] Set ATHENA_CORE_NUMBER=8
[2025-10-13 00:48:19] Starting ATLAS job with PandaID=6840225814
[2025-10-13 00:48:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:20:22]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:20:22] 2025-10-13 01:19:36,350 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 03:20:22] 2025-10-13 01:19:36,376 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2359.6115703125006
[2025-10-13 03:20:22] 2025-10-13 01:19:36,413 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6840225814/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 03:20:22] 2025-10-13 01:19:36,414 | INFO     | extracted standard info from prmon json
[2025-10-13 03:20:22] 2025-10-13 01:19:36,414 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 03:20:22] 2025-10-13 01:19:36,414 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 03:20:22] 2025-10-13 01:19:36,414 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 03:20:22] 2025-10-13 01:19:36,415 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 03:20:22] 2025-10-13 01:19:36,418 | INFO     | fitting pss+swap vs Time
[2025-10-13 03:20:22] 2025-10-13 01:19:36,418 | INFO     | sum of square deviations: 906703512.0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,419 | INFO     | sum of deviations: 42244120587.0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,419 | INFO     | mean x: 1760313954.0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,419 | INFO     | mean y: 2382780.916083916
[2025-10-13 03:20:22] 2025-10-13 01:19:36,419 | INFO     | -- intersect: -82012205184.80779
[2025-10-13 03:20:22] 2025-10-13 01:19:36,419 | INFO     | intersect: -82012205184.80779
[2025-10-13 03:20:22] 2025-10-13 01:19:36,420 | INFO     | chi2: 4.419042078711053
[2025-10-13 03:20:22] 2025-10-13 01:19:36,420 | INFO     | sum of square deviations: 814878534.5
[2025-10-13 03:20:22] 2025-10-13 01:19:36,421 | INFO     | sum of deviations: 50253832184.5
[2025-10-13 03:20:22] 2025-10-13 01:19:36,421 | INFO     | mean x: 1760313801.5
[2025-10-13 03:20:22] 2025-10-13 01:19:36,421 | INFO     | mean y: 2395618.6014492754
[2025-10-13 03:20:22] 2025-10-13 01:19:36,421 | INFO     | -- intersect: -108556746176.58624
[2025-10-13 03:20:22] 2025-10-13 01:19:36,421 | INFO     | intersect: -108556746176.58624
[2025-10-13 03:20:22] 2025-10-13 01:19:36,422 | INFO     | chi2: 3.5983467901763646
[2025-10-13 03:20:22] 2025-10-13 01:19:36,422 | INFO     | current chi2=3.5983467901763646 (change=18.571791666986545 %)
[2025-10-13 03:20:22] 2025-10-13 01:19:36,422 | INFO     | right removable region: 137
[2025-10-13 03:20:22] 2025-10-13 01:19:36,422 | INFO     | sum of square deviations: 814878534.5
[2025-10-13 03:20:22] 2025-10-13 01:19:36,423 | INFO     | sum of deviations: 1770860012.0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,423 | INFO     | mean x: 1760314106.5
[2025-10-13 03:20:22] 2025-10-13 01:19:36,423 | INFO     | mean y: 2449720.5507246377
[2025-10-13 03:20:22] 2025-10-13 01:19:36,423 | INFO     | -- intersect: -3822991406.90894
[2025-10-13 03:20:22] 2025-10-13 01:19:36,424 | INFO     | intersect: -3822991406.90894
[2025-10-13 03:20:22] 2025-10-13 01:19:36,424 | INFO     | chi2: 1.0473755798478879
[2025-10-13 03:20:22] 2025-10-13 01:19:36,424 | INFO     | current chi2=1.0473755798478879 (change=76.2985832406152 %)
[2025-10-13 03:20:22] 2025-10-13 01:19:36,424 | INFO     | sum of square deviations: 729472282.0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,425 | INFO     | sum of deviations: -6906152454.0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,425 | INFO     | mean x: 1760314259.0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,426 | INFO     | mean y: 2465104.4436090225
[2025-10-13 03:20:22] 2025-10-13 01:19:36,426 | INFO     | -- intersect: 16667935389.720385
[2025-10-13 03:20:22] 2025-10-13 01:19:36,426 | INFO     | intersect: 16667935389.720385
[2025-10-13 03:20:22] 2025-10-13 01:19:36,426 | INFO     | chi2: 0.8889958583856435
[2025-10-13 03:20:22] 2025-10-13 01:19:36,426 | INFO     | current chi2=0.8889958583856435 (change=15.121578592203388 %)
[2025-10-13 03:20:22] 2025-10-13 01:19:36,426 | INFO     | left removable region: 20
[2025-10-13 03:20:22] 2025-10-13 01:19:36,427 | INFO     | sum of square deviations: 496597218.0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,427 | INFO     | sum of deviations: 1975785974.0000007
[2025-10-13 03:20:22] 2025-10-13 01:19:36,427 | INFO     | mean x: 1760314381.0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,428 | INFO     | mean y: 2482497.675213675
[2025-10-13 03:20:22] 2025-10-13 01:19:36,428 | INFO     | -- intersect: -7001190373.907996
[2025-10-13 03:20:22] 2025-10-13 01:19:36,428 | INFO     | intersect: -7001190373.907996
[2025-10-13 03:20:22] 2025-10-13 01:19:36,428 | INFO     | chi2: 0.0009293497311255706
[2025-10-13 03:20:22] 2025-10-13 01:19:36,428 | INFO     | -- intersect: -7001190373.907996
[2025-10-13 03:20:22] 2025-10-13 01:19:36,428 | INFO     | current memory leak: 3.98 B/s (using 117 data points, chi2=0.00)
[2025-10-13 03:20:22] 2025-10-13 01:19:36,429 | INFO     | could have reported an average CPU frequency of 2359 MHz (8 samples)
[2025-10-13 03:20:22] 2025-10-13 01:19:36,429 | INFO     | ..............................
[2025-10-13 03:20:22] 2025-10-13 01:19:36,429 | INFO     | . Timing measurements:
[2025-10-13 03:20:22] 2025-10-13 01:19:36,429 | INFO     | . get job = 0 s
[2025-10-13 03:20:22] 2025-10-13 01:19:36,429 | INFO     | . initial setup = 4 s
[2025-10-13 03:20:22] 2025-10-13 01:19:36,429 | INFO     | . payload setup = 73 s
[2025-10-13 03:20:22] 2025-10-13 01:19:36,429 | INFO     | . stage-in = 0 s
[2025-10-13 03:20:22] 2025-10-13 01:19:36,430 | INFO     | . payload execution = 8749 s
[2025-10-13 03:20:22] 2025-10-13 01:19:36,430 | INFO     | . stage-out = 1 s
[2025-10-13 03:20:22] 2025-10-13 01:19:36,430 | INFO     | . log creation = 0 s
[2025-10-13 03:20:22] 2025-10-13 01:19:36,430 | INFO     | ..............................
[2025-10-13 03:20:22] 2025-10-13 01:19:36,541 | INFO     | 
[2025-10-13 03:20:22] 2025-10-13 01:19:36,541 | INFO     | job summary report
[2025-10-13 03:20:22] 2025-10-13 01:19:36,541 | INFO     | --------------------------------------------------
[2025-10-13 03:20:22] 2025-10-13 01:19:36,541 | INFO     | PanDA job id: 6840225814
[2025-10-13 03:20:22] 2025-10-13 01:19:36,541 | INFO     | task id: 46676269
[2025-10-13 03:20:22] 2025-10-13 01:19:36,541 | INFO     | errors: (none)
[2025-10-13 03:20:22] 2025-10-13 01:19:36,542 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 03:20:22] 2025-10-13 01:19:36,542 | INFO     | pilot state: finished 
[2025-10-13 03:20:22] 2025-10-13 01:19:36,542 | INFO     | transexitcode: 0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,542 | INFO     | exeerrorcode: 0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,542 | INFO     | exeerrordiag: 
[2025-10-13 03:20:22] 2025-10-13 01:19:36,542 | INFO     | exitcode: 0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,542 | INFO     | exitmsg: OK
[2025-10-13 03:20:22] 2025-10-13 01:19:36,542 | INFO     | cpuconsumptiontime: 45299 s
[2025-10-13 03:20:22] 2025-10-13 01:19:36,542 | INFO     | nevents: 400
[2025-10-13 03:20:22] 2025-10-13 01:19:36,542 | INFO     | neventsw: 0
[2025-10-13 03:20:22] 2025-10-13 01:19:36,542 | INFO     | pid: 2230042
[2025-10-13 03:20:22] 2025-10-13 01:19:36,543 | INFO     | pgrp: 2230042
[2025-10-13 03:20:22] 2025-10-13 01:19:36,543 | INFO     | corecount: 8
[2025-10-13 03:20:22] 2025-10-13 01:19:36,543 | INFO     | event service: False
[2025-10-13 03:20:22] 2025-10-13 01:19:36,543 | INFO     | sizes: {0: 2348029, 1: 2348721, 2: 2348920, 13: 2348920, 23: 2348976, 34: 2349004, 45: 2349160, 48: 2349450, 56: 2349478, 8827: 2377736, 8829: 2386748, 8830: 23870
[2025-10-13 03:20:22] 2025-10-13 01:19:36,543 | INFO     | --------------------------------------------------
[2025-10-13 03:20:22] 2025-10-13 01:19:36,543 | INFO     | 
[2025-10-13 03:20:22] 2025-10-13 01:19:36,543 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2025-10-13 03:20:22] 2025-10-13 01:19:36,705 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,706 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,706 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,706 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,706 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,706 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,706 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,706 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,707 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,707 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,707 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,707 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,707 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,707 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,707 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,707 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,707 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,707 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:20:22] 2025-10-13 01:19:36,708 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,708 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:20:22] 2025-10-13 01:19:36,708 | INFO     | job 6840225814 has completed (purged errors)
[2025-10-13 03:20:22] 2025-10-13 01:19:36,708 | INFO     | overall cleanup function is called
[2025-10-13 03:20:22] 2025-10-13 01:19:37,725 | INFO     | --- collectZombieJob: --- 10, [2230042]
[2025-10-13 03:20:22] 2025-10-13 01:19:37,725 | INFO     | zombie collector waiting for pid 2230042
[2025-10-13 03:20:22] 2025-10-13 01:19:37,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:20:22] 2025-10-13 01:19:37,725 | INFO     | collected zombie processes
[2025-10-13 03:20:22] 2025-10-13 01:19:37,725 | INFO     | will attempt to kill all subprocesses of pid=2230042
[2025-10-13 03:20:22] 2025-10-13 01:19:39,027 | INFO     | process IDs to be killed: [2230042] (in reverse order)
[2025-10-13 03:20:22] 2025-10-13 01:19:40,262 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:20:22] 2025-10-13 01:19:40,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:20:22] 2025-10-13 01:19:40,305 | INFO     | did not find any defunct processes belonging to 2230042
[2025-10-13 03:20:22] 2025-10-13 01:19:40,350 | INFO     | did not find any defunct processes belonging to 2230042
[2025-10-13 03:20:22] 2025-10-13 01:19:40,350 | INFO     | ready for new job
[2025-10-13 03:20:22] 2025-10-13 01:19:40,350 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:20:22] 2025-10-13 01:19:40,352 | INFO     | ***************************************
[2025-10-13 03:20:22] 2025-10-13 01:19:40,352 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:20:22] 2025-10-13 01:19:40,353 | INFO     | ***************************************
[2025-10-13 03:20:22] 2025-10-13 01:19:40,353 | INFO     | 
[2025-10-13 03:20:22] 2025-10-13 01:19:40,379 | INFO     | architecture information:
[2025-10-13 03:20:22] 2025-10-13 01:19:40,393 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:20:22] 2025-10-13 01:19:40,542 | INFO     | cat /etc/os-release:
[2025-10-13 03:20:22] NAME="CentOS Linux"
[2025-10-13 03:20:22] VERSION="7 (Core)"
[2025-10-13 03:20:22] ID="centos"
[2025-10-13 03:20:22] ID_LIKE="rhel fedora"
[2025-10-13 03:20:22] VERSION_ID="7"
[2025-10-13 03:20:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:20:22] ANSI_COLOR="0;31"
[2025-10-13 03:20:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:20:22] HOME_URL="https://www.centos.org/"
[2025-10-13 03:20:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:20:22] 
[2025-10-13 03:20:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:20:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:20:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:20:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:20:22] 
[2025-10-13 03:20:22] 2025-10-13 01:19:40,542 | INFO     | ***************************************
[2025-10-13 03:20:22] 2025-10-13 01:19:41,049 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2025-10-13 03:20:22] 2025-10-13 01:19:41,177 | INFO     | sufficient remaining disk space (193172865024 B)
[2025-10-13 03:20:22] 2025-10-13 01:19:41,178 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:20:22] 2025-10-13 01:19:41,178 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:20:22] 2025-10-13 01:19:41,178 | INFO     | update_server=False
[2025-10-13 03:20:22] 2025-10-13 01:19:41,178 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:20:22] 2025-10-13 01:19:41,178 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:20:22] 2025-10-13 01:19:41,185 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 03:20:22] 2025-10-13 01:19:41,185 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 03:20:22] 2025-10-13 01:19:41,185 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:20:22] 2025-10-13 01:19:41,185 | INFO     | will abort loop
[2025-10-13 03:20:22] 2025-10-13 01:19:41,397 | INFO     | all data control threads have been joined
[2025-10-13 03:20:22] 2025-10-13 01:19:41,453 | INFO     | all job control threads have been joined
[2025-10-13 03:20:22] 2025-10-13 01:19:41,561 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:20:22] 2025-10-13 01:19:42,181 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:42,197 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:42,205 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:20:22] 2025-10-13 01:19:42,209 | INFO     | [job] validate thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:42,393 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:42,405 | INFO     | [data] control thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:42,405 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:42,453 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:42,457 | INFO     | [job] control thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:42,569 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:42,621 | INFO     | all payload control threads have been joined
[2025-10-13 03:20:22] 2025-10-13 01:19:42,765 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:43,325 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:43,461 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:43,489 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:43,625 | INFO     | [payload] control thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:44,217 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:45,189 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:20:22] 2025-10-13 01:19:51,157 [wrapper] supervise_pilot (15 min periods counter: 11)
[2025-10-13 03:20:22] 2025-10-13 01:20:08,618 | INFO     | PID=2200813 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:20:22] 2025-10-13 01:20:08,618 | INFO     | .. there are 25 such processes running
[2025-10-13 03:20:22] 2025-10-13 01:20:08,619 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:20:22] 2025-10-13 01:20:08,619 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:20:22] 2025-10-13 01:20:08,619 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:20:22] 2025-10-13 01:20:14,689 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:20:22] 2025-10-13 01:20:15,461 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139637685176128)>', '<ExcThread(monitor, started 139636852627200)>']
[2025-10-13 03:20:22] 2025-10-13 01:20:15,661 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:20:22] 2025-10-13 01:20:15,662 | INFO     | [monitor] control thread has ended
[2025-10-13 03:20:22] 2025-10-13 01:20:20,485 | INFO     | all workflow threads have been joined
[2025-10-13 03:20:22] 2025-10-13 01:20:20,485 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:20:22] 2025-10-13 01:20:20,485 | INFO     | traces error code: 0
[2025-10-13 03:20:22] 2025-10-13 01:20:20,486 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:20:22] 2025-10-13 01:20:20,658 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:20:22] 2025-10-13 01:20:20,673 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:20:22] 2025-10-13 01:20:20,717 [wrapper] pilotpid: 2200813
[2025-10-13 03:20:22] 2025-10-13 01:20:20,762 [wrapper] Pilot exit status: 0
[2025-10-13 03:20:22] 2025-10-13 01:20:20,929 [wrapper] pandaids: 6840225814
[2025-10-13 03:20:22] 2025-10-13 01:20:21,404 [wrapper] cleanup supervisor_pilot 2959679 2200814
[2025-10-13 03:20:22] 2025-10-13 01:20:21,412 [wrapper] Test setup, not cleaning
[2025-10-13 03:20:22] 2025-10-13 01:20:21,469 [wrapper] apfmon messages muted
[2025-10-13 03:20:22] 2025-10-13 01:20:21,491 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:20:22] 2025-10-13 01:20:21,496 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:20:22]  *** Error codes and diagnostics ***
[2025-10-13 03:20:22]     "exeErrorCode": 0,
[2025-10-13 03:20:22]     "exeErrorDiag": "",
[2025-10-13 03:20:22]     "pilotErrorCode": 0,
[2025-10-13 03:20:22]     "pilotErrorDiag": "",
[2025-10-13 03:20:22]  *** Listing of results directory ***
[2025-10-13 03:20:22] insgesamt 413816
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc    557409 Okt 12 17:00 pilot3.tar.gz
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc      5112 Okt 12 17:58 queuedata.json
[2025-10-13 03:20:22] -rwx------ 1 boinc boinc     36292 Okt 12 17:58 runpilot2-wrapper.sh
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc       100 Okt 13 00:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:20:22] -rwxr-xr-x 1 boinc boinc      7986 Okt 13 00:48 run_atlas
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc       105 Okt 13 00:48 job.xml
[2025-10-13 03:20:22] -rw-r--r-- 2 boinc boinc     15120 Okt 13 00:48 start_atlas.sh
[2025-10-13 03:20:22] drwxrwx--x 2 boinc boinc      4096 Okt 13 00:48 shared
[2025-10-13 03:20:22] -rw-r--r-- 2 boinc boinc    569685 Okt 13 00:48 input.tar.gz
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc      6666 Okt 13 00:48 init_data.xml
[2025-10-13 03:20:22] -rw-r--r-- 2 boinc boinc 219346563 Okt 13 00:48 EVNT.46676267._004596.pool.root.1
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc         0 Okt 13 00:48 boinc_lockfile
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc      2550 Okt 13 00:48 pandaJob.out
[2025-10-13 03:20:22] -rw------- 1 boinc boinc    975603 Okt 13 00:49 agis_schedconf.cvmfs.json
[2025-10-13 03:20:22] -rw------- 1 boinc boinc   1560580 Okt 13 00:49 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:20:22] drwx------ 5 boinc boinc      4096 Okt 13 00:50 pilot3
[2025-10-13 03:20:22] -rw------- 1 boinc boinc 197323396 Okt 13 03:17 HITS.46676269._082854.pool.root.1
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc       530 Okt 13 03:18 boinc_task_state.xml
[2025-10-13 03:20:22] -rw------- 1 boinc boinc      1027 Okt 13 03:18 memory_monitor_summary.json
[2025-10-13 03:20:22] -rw------- 1 boinc boinc    380857 Okt 13 03:18 log.46676269._082854.job.log.tgz.1
[2025-10-13 03:20:22] -rw------- 1 boinc boinc      7752 Okt 13 03:19 heartbeat.json
[2025-10-13 03:20:22] -rw------- 1 boinc boinc        95 Okt 13 03:20 pilot_heartbeat.json
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc      8192 Okt 13 03:20 boinc_mmap_file
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc        27 Okt 13 03:20 wrapper_checkpoint.txt
[2025-10-13 03:20:22] -rw------- 1 boinc boinc      5018 Okt 13 03:20 pilotlog.txt
[2025-10-13 03:20:22] -rw------- 1 boinc boinc   1203793 Okt 13 03:20 log.46676269._082854.job.log.1
[2025-10-13 03:20:22] -rw------- 1 boinc boinc       357 Okt 13 03:20 output.list
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc       620 Okt 13 03:20 runtime_log
[2025-10-13 03:20:22] -rw------- 1 boinc boinc   1607680 Okt 13 03:20 result.tar.gz
[2025-10-13 03:20:22] -rw------- 1 boinc boinc       664 Okt 13 03:20 xXfKDmOeDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzWkNDmLFzpPm.diag
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc      8842 Okt 13 03:20 runtime_log.err
[2025-10-13 03:20:22] -rw-r--r-- 1 boinc boinc     20849 Okt 13 03:20 stderr.txt
[2025-10-13 03:20:22] HITS file was successfully produced:
[2025-10-13 03:20:22] -rw------- 1 boinc boinc 197323396 Okt 13 03:17 shared/HITS.pool.root.1
[2025-10-13 03:20:22]  *** Contents of shared directory: ***
[2025-10-13 03:20:22] insgesamt 409064
[2025-10-13 03:20:22] -rw-r--r-- 2 boinc boinc     15120 Okt 13 00:48 start_atlas.sh
[2025-10-13 03:20:22] -rw-r--r-- 2 boinc boinc    569685 Okt 13 00:48 input.tar.gz
[2025-10-13 03:20:22] -rw-r--r-- 2 boinc boinc 219346563 Okt 13 00:48 ATLAS.root_0
[2025-10-13 03:20:22] -rw------- 1 boinc boinc 197323396 Okt 13 03:17 HITS.pool.root.1
[2025-10-13 03:20:22] -rw------- 1 boinc boinc   1607680 Okt 13 03:20 result.tar.gz
03:20:24 (2184164): run_atlas exited; CPU time 45851.511647
03:20:24 (2184164): called boinc_finish(0)

</stderr_txt>
]]>

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