Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:58:52 (1391407): wrapper (7.7.26015): starting
16:58:52 (1391407): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:58:52] Arguments: --nthreads 8
[2025-10-12 16:58:52] Threads: 8
[2025-10-12 16:58:52] Checking for CVMFS
[2025-10-12 16:58:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:58:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:58:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:58:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:58:55] 2.13.2.0 136315 23270 247928 151636 3 744 27281404 40960001 19105 16776704 0 59396212 99.707 51013976 32187 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 16:58:55] CVMFS is ok
[2025-10-12 16:58:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:58:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:58:55] Further information can be found at the LHC@home message board.
[2025-10-12 16:58:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:58:55] Checking for apptainer binary...
[2025-10-12 16:58:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:58:55] Running /usr/bin/apptainer --version
[2025-10-12 16:58:55] apptainer version 1.4.3-1.el9
[2025-10-12 16:58:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:58:56] c6-8-12-2.aglt2.org
[2025-10-12 16:58:56] apptainer works
[2025-10-12 16:58:56] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:58:56] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:58:56] Starting ATLAS job with PandaID=6840712918
[2025-10-12 16:58:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:21:40]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:21:40] 2025-10-13 03:21:05,722 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:21:40] 2025-10-13 03:21:05,723 | INFO     | sum of square deviations: 15834168917.283073
[2025-10-12 23:21:40] 2025-10-13 03:21:05,726 | INFO     | sum of deviations: 131359896434.79251
[2025-10-12 23:21:40] 2025-10-13 03:21:05,726 | INFO     | mean x: 1760314323.7169812
[2025-10-12 23:21:40] 2025-10-13 03:21:05,726 | INFO     | mean y: 2489952.6361185983
[2025-10-12 23:21:40] 2025-10-13 03:21:05,726 | INFO     | -- intersect: -14601036665.281328
[2025-10-12 23:21:40] 2025-10-13 03:21:05,726 | INFO     | intersect: -14601036665.281328
[2025-10-12 23:21:40] 2025-10-13 03:21:05,727 | INFO     | chi2: 4.668841643750541
[2025-10-12 23:21:40] 2025-10-13 03:21:05,727 | INFO     | sum of square deviations: 15202638202.177536
[2025-10-12 23:21:40] 2025-10-13 03:21:05,730 | INFO     | sum of deviations: 153192758770.3389
[2025-10-12 23:21:40] 2025-10-13 03:21:05,731 | INFO     | mean x: 1760314171.226776
[2025-10-12 23:21:40] 2025-10-13 03:21:05,731 | INFO     | mean y: 2495162.863387978
[2025-10-12 23:21:40] 2025-10-13 03:21:05,731 | INFO     | -- intersect: -17735701366.350006
[2025-10-12 23:21:40] 2025-10-13 03:21:05,731 | INFO     | intersect: -17735701366.350006
[2025-10-12 23:21:40] 2025-10-13 03:21:05,731 | INFO     | chi2: 3.993579394881324
[2025-10-12 23:21:40] 2025-10-13 03:21:05,731 | INFO     | current chi2=3.993579394881324 (change=14.46316453617755 %)
[2025-10-12 23:21:40] 2025-10-13 03:21:05,732 | INFO     | right removable region: 365
[2025-10-12 23:21:40] 2025-10-13 03:21:05,732 | INFO     | sum of square deviations: 15202543470.513742
[2025-10-12 23:21:40] 2025-10-13 03:21:05,735 | INFO     | sum of deviations: 20692412784.8907
[2025-10-12 23:21:40] 2025-10-13 03:21:05,735 | INFO     | mean x: 1760314476.2185793
[2025-10-12 23:21:40] 2025-10-13 03:21:05,736 | INFO     | mean y: 2516638.2513661203
[2025-10-12 23:21:40] 2025-10-13 03:21:05,736 | INFO     | -- intersect: -2393474127.621615
[2025-10-12 23:21:40] 2025-10-13 03:21:05,736 | INFO     | intersect: -2393474127.621615
[2025-10-12 23:21:40] 2025-10-13 03:21:05,736 | INFO     | chi2: 1.367181656562654
[2025-10-12 23:21:40] 2025-10-13 03:21:05,736 | INFO     | current chi2=1.367181656562654 (change=70.71689808985727 %)
[2025-10-12 23:21:40] 2025-10-13 03:21:05,737 | INFO     | sum of square deviations: 14587919272.299232
[2025-10-12 23:21:40] 2025-10-13 03:21:05,740 | INFO     | sum of deviations: -22766439853.648216
[2025-10-12 23:21:40] 2025-10-13 03:21:05,740 | INFO     | mean x: 1760314628.7229917
[2025-10-12 23:21:40] 2025-10-13 03:21:05,740 | INFO     | mean y: 2527389.9335180055
[2025-10-12 23:21:40] 2025-10-13 03:21:05,741 | INFO     | -- intersect: 2749738720.7789626
[2025-10-12 23:21:40] 2025-10-13 03:21:05,741 | INFO     | intersect: 2749738720.7789626
[2025-10-12 23:21:40] 2025-10-13 03:21:05,741 | INFO     | chi2: 0.8078076346989993
[2025-10-12 23:21:40] 2025-10-13 03:21:05,741 | INFO     | current chi2=0.8078076346989993 (change=40.914389041030866 %)
[2025-10-12 23:21:40] 2025-10-13 03:21:05,742 | INFO     | sum of square deviations: 13990042409.648806
[2025-10-12 23:21:40] 2025-10-13 03:21:05,745 | INFO     | sum of deviations: -35973831390.82862
[2025-10-12 23:21:40] 2025-10-13 03:21:05,745 | INFO     | mean x: 1760314781.233146
[2025-10-12 23:21:40] 2025-10-13 03:21:05,745 | INFO     | mean y: 2530746.070224719
[2025-10-12 23:21:40] 2025-10-13 03:21:05,745 | INFO     | -- intersect: 4528983581.637735
[2025-10-12 23:21:40] 2025-10-13 03:21:05,745 | INFO     | intersect: 4528983581.637735
[2025-10-12 23:21:40] 2025-10-13 03:21:05,746 | INFO     | chi2: 0.739777171590485
[2025-10-12 23:21:40] 2025-10-13 03:21:05,746 | INFO     | current chi2=0.739777171590485 (change=8.421616754570966 %)
[2025-10-12 23:21:40] 2025-10-13 03:21:05,746 | INFO     | left removable region: 30
[2025-10-12 23:21:40] 2025-10-13 03:21:05,746 | INFO     | sum of square deviations: 11657448636.43593
[2025-10-12 23:21:40] 2025-10-13 03:21:05,750 | INFO     | sum of deviations: -5098774766.988039
[2025-10-12 23:21:40] 2025-10-13 03:21:05,750 | INFO     | mean x: 1760315055.7522388
[2025-10-12 23:21:40] 2025-10-13 03:21:05,750 | INFO     | mean y: 2534611.6507462687
[2025-10-12 23:21:40] 2025-10-13 03:21:05,751 | INFO     | -- intersect: 772467233.1135118
[2025-10-12 23:21:40] 2025-10-13 03:21:05,751 | INFO     | intersect: 772467233.1135118
[2025-10-12 23:21:40] 2025-10-13 03:21:05,751 | INFO     | chi2: 0.03511007725800768
[2025-10-12 23:21:40] 2025-10-13 03:21:05,751 | INFO     | -- intersect: 772467233.1135118
[2025-10-12 23:21:40] 2025-10-13 03:21:05,751 | INFO     | current memory leak: -0.44 B/s (using 335 data points, chi2=0.04)
[2025-10-12 23:21:40] 2025-10-13 03:21:05,752 | INFO     | could have reported an average CPU frequency of 2758 MHz (16 samples)
[2025-10-12 23:21:40] 2025-10-13 03:21:05,752 | INFO     | ..............................
[2025-10-12 23:21:40] 2025-10-13 03:21:05,752 | INFO     | . Timing measurements:
[2025-10-12 23:21:40] 2025-10-13 03:21:05,752 | INFO     | . get job = 0 s
[2025-10-12 23:21:40] 2025-10-13 03:21:05,752 | INFO     | . initial setup = 9 s
[2025-10-12 23:21:40] 2025-10-13 03:21:05,753 | INFO     | . payload setup = 62 s
[2025-10-12 23:21:40] 2025-10-13 03:21:05,753 | INFO     | . stage-in = 0 s
[2025-10-12 23:21:40] 2025-10-13 03:21:05,753 | INFO     | . payload execution = 22638 s
[2025-10-12 23:21:40] 2025-10-13 03:21:05,753 | INFO     | . stage-out = 4 s
[2025-10-12 23:21:40] 2025-10-13 03:21:05,753 | INFO     | . log creation = 0 s
[2025-10-12 23:21:40] 2025-10-13 03:21:05,753 | INFO     | ..............................
[2025-10-12 23:21:40] 2025-10-13 03:21:06,204 | INFO     | 
[2025-10-12 23:21:40] 2025-10-13 03:21:06,204 | INFO     | job summary report
[2025-10-12 23:21:40] 2025-10-13 03:21:06,204 | INFO     | --------------------------------------------------
[2025-10-12 23:21:40] 2025-10-13 03:21:06,204 | INFO     | PanDA job id: 6840712918
[2025-10-12 23:21:40] 2025-10-13 03:21:06,204 | INFO     | task id: 46676269
[2025-10-12 23:21:40] 2025-10-13 03:21:06,204 | INFO     | errors: (none)
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | pilot state: finished 
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | transexitcode: 0
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | exeerrorcode: 0
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | exeerrordiag: 
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | exitcode: 0
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | exitmsg: OK
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | cpuconsumptiontime: 43807 s
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | nevents: 400
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | neventsw: 0
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | pid: 1412404
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | pgrp: 1412404
[2025-10-12 23:21:40] 2025-10-13 03:21:06,205 | INFO     | corecount: 8
[2025-10-12 23:21:40] 2025-10-13 03:21:06,206 | INFO     | event service: False
[2025-10-12 23:21:40] 2025-10-13 03:21:06,206 | INFO     | sizes: {0: 2348023, 1: 2348624, 2: 2348708, 3: 2348764, 4: 2348963, 5: 2348963, 16: 2349147, 27: 2349175, 38: 2349203, 49: 2349433, 51: 2349521, 61: 2349829, 22705
[2025-10-12 23:21:40] 2025-10-13 03:21:06,206 | INFO     | --------------------------------------------------
[2025-10-12 23:21:40] 2025-10-13 03:21:06,206 | INFO     | 
[2025-10-12 23:21:40] 2025-10-13 03:21:06,206 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 23:21:40] 2025-10-13 03:21:06,343 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,344 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,344 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,344 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,344 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,344 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,344 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,344 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,344 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,344 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,345 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,345 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,345 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,345 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,345 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,345 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,345 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,345 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:21:40] 2025-10-13 03:21:06,345 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,345 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:21:40] 2025-10-13 03:21:06,346 | INFO     | job 6840712918 has completed (purged errors)
[2025-10-12 23:21:40] 2025-10-13 03:21:06,346 | INFO     | overall cleanup function is called
[2025-10-12 23:21:40] 2025-10-13 03:21:07,364 | INFO     | --- collectZombieJob: --- 10, [1412404]
[2025-10-12 23:21:40] 2025-10-13 03:21:07,364 | INFO     | zombie collector waiting for pid 1412404
[2025-10-12 23:21:40] 2025-10-13 03:21:07,364 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:21:40] 2025-10-13 03:21:07,380 | INFO     | collected zombie processes
[2025-10-12 23:21:40] 2025-10-13 03:21:07,380 | INFO     | will attempt to kill all subprocesses of pid=1412404
[2025-10-12 23:21:40] 2025-10-13 03:21:07,481 | INFO     | PID=1399137 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:21:40] 2025-10-13 03:21:07,481 | INFO     | .. there are 27 such processes running
[2025-10-12 23:21:40] 2025-10-13 03:21:08,059 | INFO     | process IDs to be killed: [1412404] (in reverse order)
[2025-10-12 23:21:40] 2025-10-13 03:21:08,243 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:21:40] 2025-10-13 03:21:08,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:21:40] 2025-10-13 03:21:08,259 | INFO     | did not find any defunct processes belonging to 1412404
[2025-10-12 23:21:40] 2025-10-13 03:21:08,276 | INFO     | did not find any defunct processes belonging to 1412404
[2025-10-12 23:21:40] 2025-10-13 03:21:08,276 | INFO     | ready for new job
[2025-10-12 23:21:40] 2025-10-13 03:21:08,277 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:21:40] 2025-10-13 03:21:08,280 | INFO     | ***************************************
[2025-10-12 23:21:40] 2025-10-13 03:21:08,280 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:21:40] 2025-10-13 03:21:08,280 | INFO     | ***************************************
[2025-10-12 23:21:40] 2025-10-13 03:21:08,280 | INFO     | 
[2025-10-12 23:21:40] 2025-10-13 03:21:08,284 | INFO     | architecture information:
[2025-10-12 23:21:40] 2025-10-13 03:21:08,285 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:21:40] 2025-10-13 03:21:08,314 | INFO     | cat /etc/os-release:
[2025-10-12 23:21:40] NAME="CentOS Linux"
[2025-10-12 23:21:40] VERSION="7 (Core)"
[2025-10-12 23:21:40] ID="centos"
[2025-10-12 23:21:40] ID_LIKE="rhel fedora"
[2025-10-12 23:21:40] VERSION_ID="7"
[2025-10-12 23:21:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:21:40] ANSI_COLOR="0;31"
[2025-10-12 23:21:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:21:40] HOME_URL="https://www.centos.org/"
[2025-10-12 23:21:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:21:40] 
[2025-10-12 23:21:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:21:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:21:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:21:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:21:40] 
[2025-10-12 23:21:40] 2025-10-13 03:21:08,315 | INFO     | ***************************************
[2025-10-12 23:21:40] 2025-10-13 03:21:08,818 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 23:21:40] 2025-10-13 03:21:08,955 | INFO     | sufficient remaining disk space (74842112000 B)
[2025-10-12 23:21:40] 2025-10-13 03:21:08,956 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:21:40] 2025-10-13 03:21:08,956 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:21:40] 2025-10-13 03:21:08,956 | INFO     | update_server=False
[2025-10-12 23:21:40] 2025-10-13 03:21:08,956 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:21:40] 2025-10-13 03:21:09,132 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:21:40] 2025-10-13 03:21:09,315 | INFO     | all job control threads have been joined
[2025-10-12 23:21:40] 2025-10-13 03:21:09,468 | INFO     | all payload control threads have been joined
[2025-10-12 23:21:40] 2025-10-13 03:21:09,511 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:21:40] 2025-10-13 03:21:09,511 | INFO     | aborting loop
[2025-10-12 23:21:40] 2025-10-13 03:21:09,611 | INFO     | all data control threads have been joined
[2025-10-12 23:21:40] 2025-10-13 03:21:09,679 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:21:40] 2025-10-13 03:21:09,968 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:10,021 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:10,322 | INFO     | [job] control thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:10,474 | INFO     | [payload] control thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:10,517 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:10,617 | INFO     | [data] control thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:10,865 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:21:40] 2025-10-13 03:21:10,909 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:10,964 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:11,139 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:11,204 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:11,292 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:11,366 | INFO     | [job] validate thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:11,390 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:11,436 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:21:40] 2025-10-13 03:21:11,478 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:11,870 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:13,695 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:21:40] 2025-10-13 03:21:14,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140645102634816)>', '<ExcThread(monitor, started 140643938596608)>']
[2025-10-12 23:21:40] 2025-10-13 03:21:19,514 | INFO     | all workflow threads have been joined
[2025-10-12 23:21:40] 2025-10-13 03:21:19,514 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:21:40] 2025-10-13 03:21:19,514 | INFO     | traces error code: 0
[2025-10-12 23:21:40] 2025-10-13 03:21:19,514 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:21:40] 2025-10-13 03:21:40,142 | INFO     | PID=1399137 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:21:40] 2025-10-13 03:21:40,143 | INFO     | .. there are 27 such processes running
[2025-10-12 23:21:40] 2025-10-13 03:21:40,143 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:21:40] 2025-10-13 03:21:40,143 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:21:40] 2025-10-13 03:21:40,143 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:21:40] 2025-10-13 03:21:40,143 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:21:40] 2025-10-13 03:21:40,143 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 23:21:40] 2025-10-13 03:21:40,143 | INFO     | [monitor] control thread has ended
[2025-10-12 23:21:40] 2025-10-13 03:21:40,384 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:21:40] 2025-10-13 03:21:40,387 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:21:40] 2025-10-13 03:21:40,390 [wrapper] pilotpid: 1399137
[2025-10-12 23:21:40] 2025-10-13 03:21:40,393 [wrapper] Pilot exit status: 0
[2025-10-12 23:21:40] 2025-10-13 03:21:40,413 [wrapper] pandaids: 6840712918
[2025-10-12 23:21:40] 2025-10-13 03:21:40,518 [wrapper] cleanup supervisor_pilot 2632953 1399138
[2025-10-12 23:21:40] 2025-10-13 03:21:40,522 [wrapper] Test setup, not cleaning
[2025-10-12 23:21:40] 2025-10-13 03:21:40,526 [wrapper] apfmon messages muted
[2025-10-12 23:21:40] 2025-10-13 03:21:40,530 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:21:40] 2025-10-13 03:21:40,534 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:21:40]  *** Error codes and diagnostics ***
[2025-10-12 23:21:40]     "exeErrorCode": 0,
[2025-10-12 23:21:40]     "exeErrorDiag": "",
[2025-10-12 23:21:40]     "pilotErrorCode": 0,
[2025-10-12 23:21:40]     "pilotErrorDiag": "",
[2025-10-12 23:21:40]  *** Listing of results directory ***
[2025-10-12 23:21:40] total 411900
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 14:53 pilot3.tar.gz
[2025-10-12 23:21:40] -rwx------. 1 boincer umatlas     36292 Oct 12 15:25 runpilot2-wrapper.sh
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 15:25 queuedata.json
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas       100 Oct 12 16:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:21:40] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 16:58 run_atlas
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas       105 Oct 12 16:58 job.xml
[2025-10-12 23:21:40] -rw-r--r--. 2 boincer umatlas 220340340 Oct 12 16:58 EVNT.46676267._004452.pool.root.1
[2025-10-12 23:21:40] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 16:58 shared
[2025-10-12 23:21:40] -rw-r--r--. 2 boincer umatlas    569675 Oct 12 16:58 input.tar.gz
[2025-10-12 23:21:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:58 start_atlas.sh
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas         0 Oct 12 16:58 boinc_lockfile
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas      2547 Oct 12 16:58 pandaJob.out
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas    975536 Oct 12 17:00 agis_schedconf.cvmfs.json
[2025-10-12 23:21:40] drwx------. 5 boincer umatlas      4096 Oct 12 17:00 pilot3
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas      6840 Oct 12 23:11 init_data.xml
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas       530 Oct 12 23:19 boinc_task_state.xml
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas 190953898 Oct 12 23:19 HITS.46676269._087431.pool.root.1
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas      1041 Oct 12 23:20 memory_monitor_summary.json
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas   1560580 Oct 12 23:20 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas    539869 Oct 12 23:20 log.46676269._087431.job.log.tgz.1
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas        95 Oct 12 23:20 pilot_heartbeat.json
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas      7816 Oct 12 23:21 heartbeat.json
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas        28 Oct 12 23:21 wrapper_checkpoint.txt
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 23:21 boinc_mmap_file
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas       893 Oct 12 23:21 pilotlog.txt
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas   2756408 Oct 12 23:21 log.46676269._087431.job.log.1
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas       357 Oct 12 23:21 output.list
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas       620 Oct 12 23:21 runtime_log
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas   3317760 Oct 12 23:21 result.tar.gz
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas      8709 Oct 12 23:21 runtime_log.err
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas       658 Oct 12 23:21 lTKODmDsGS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmznUMDm7LtGam.diag
[2025-10-12 23:21:40] -rw-r--r--. 1 boincer umatlas     21138 Oct 12 23:21 stderr.txt
[2025-10-12 23:21:40] HITS file was successfully produced:
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas 190953898 Oct 12 23:19 shared/HITS.pool.root.1
[2025-10-12 23:21:40]  *** Contents of shared directory: ***
[2025-10-12 23:21:40] total 405480
[2025-10-12 23:21:40] -rw-r--r--. 2 boincer umatlas 220340340 Oct 12 16:58 ATLAS.root_0
[2025-10-12 23:21:40] -rw-r--r--. 2 boincer umatlas    569675 Oct 12 16:58 input.tar.gz
[2025-10-12 23:21:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:58 start_atlas.sh
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas 190953898 Oct 12 23:19 HITS.pool.root.1
[2025-10-12 23:21:40] -rw-------. 1 boincer umatlas   3317760 Oct 12 23:21 result.tar.gz
23:21:41 (1391407): run_atlas exited; CPU time 44560.451313
23:21:41 (1391407): called boinc_finish(0)

</stderr_txt>
]]>

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