Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
21:23:26 (45406): wrapper (7.7.26015): starting
21:23:26 (45406): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 21:23:26] Arguments: --nthreads 12
[2025-10-12 21:23:26] Threads: 12
[2025-10-12 21:23:26] Checking for CVMFS
[2025-10-12 21:23:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:23:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:23:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:23:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:23:27] 2.11.0.0 3299214 3597 88760 151638 1 188 5444547 6144000 13801 130560 0 70656157 100.000 132653 198 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 21:23:27] CVMFS is ok
[2025-10-12 21:23:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:23:27] Checking for apptainer binary...
[2025-10-12 21:23:27] apptainer is not installed, using version from CVMFS
[2025-10-12 21:23:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:23:27] radiat0r
[2025-10-12 21:23:27] apptainer works
[2025-10-12 21:23:27] Set ATHENA_PROC_NUMBER=12
[2025-10-12 21:23:27] Set ATHENA_CORE_NUMBER=12
[2025-10-12 21:23:27] Starting ATLAS job with PandaID=6840530442
[2025-10-12 21:23:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:15:13]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:15:13]  surl=/var/lib/boinc/slots/13/PanDA_Pilot-6840530442/log.46676269._085368.job.log.tgz.1
[2025-10-12 22:15:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/8d/log.46676269._085368.job.log.tgz.1
[2025-10-12 22:15:13]  workdir=None
[2025-10-12 22:15:13] ]
[2025-10-12 22:15:13] 2025-10-12 22:14:30,764 | INFO     | transferring file log.46676269._085368.job.log.tgz.1 from /var/lib/boinc/slots/13/PanDA_Pilot-6840530442/log.46676269._085368.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-12 22:15:13] 2025-10-12 22:14:30,765 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/13/PanDA_Pilot-6840530442/log.46676269._085368.job.log.tgz.1 /var/lib/boinc/slots/13/log.46676269._085368.j
[2025-10-12 22:15:13] 2025-10-12 22:14:30,790 | INFO     | adding to output.list: log.46676269._085368.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/8d/log.46676269._085368.job.log.tg
[2025-10-12 22:15:13] 2025-10-12 22:14:30,791 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 22:15:13] 2025-10-12 22:14:30,791 | INFO     | summary of transferred files:
[2025-10-12 22:15:13] 2025-10-12 22:14:30,791 | INFO     |  -- lfn=log.46676269._085368.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 22:15:13] 2025-10-12 22:14:30,792 | INFO     | stage-out finished correctly
[2025-10-12 22:15:13] 2025-10-12 22:14:31,489 | INFO     | monitor loop #214: job 0:6840530442 is in state 'finished'
[2025-10-12 22:15:13] 2025-10-12 22:14:31,489 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:15:13] 2025-10-12 22:14:32,220 | INFO     | time since job start (3050s) is within the limit (172800.0s)
[2025-10-12 22:15:13] 2025-10-12 22:14:33,379 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 22:15:13] 2025-10-12 22:14:33,470 | INFO     | job 6840530442 has state=finished
[2025-10-12 22:15:13] 2025-10-12 22:14:33,471 | INFO     | preparing for final server update for job 6840530442 in state='finished'
[2025-10-12 22:15:13] 2025-10-12 22:14:33,471 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:15:13] 2025-10-12 22:14:33,471 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:15:13] 2025-10-12 22:14:33,471 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:15:13] 2025-10-12 22:14:33,471 | INFO     | job 6840530442 has finished - writing final server update
[2025-10-12 22:15:13] 2025-10-12 22:14:33,472 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:15:13] 2025-10-12 22:14:33,473 | INFO     | executing command: lscpu
[2025-10-12 22:15:13] 2025-10-12 22:14:33,659 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:15:13] 2025-10-12 22:14:33,990 | INFO     | monitor loop #215: job 0:6840530442 is in state 'finished'
[2025-10-12 22:15:13] 2025-10-12 22:14:33,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:15:13] 2025-10-12 22:14:34,223 | INFO     | time since job start (3052s) is within the limit (172800.0s)
[2025-10-12 22:15:13] 2025-10-12 22:14:36,227 | INFO     | time since job start (3054s) is within the limit (172800.0s)
[2025-10-12 22:15:13] 2025-10-12 22:14:36,494 | INFO     | monitor loop #216: job 0:6840530442 is in state 'finished'
[2025-10-12 22:15:13] 2025-10-12 22:14:36,494 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:15:13] 2025-10-12 22:14:38,231 | INFO     | time since job start (3056s) is within the limit (172800.0s)
[2025-10-12 22:15:13] 2025-10-12 22:14:38,997 | INFO     | monitor loop #217: job 0:6840530442 is in state 'finished'
[2025-10-12 22:15:13] 2025-10-12 22:14:38,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:15:13] 2025-10-12 22:14:39,829 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 22:15:13] 2025-10-12 22:14:39,926 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2344.5147421875
[2025-10-12 22:15:13] 2025-10-12 22:14:40,008 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-6840530442/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:15:13] 2025-10-12 22:14:40,009 | INFO     | extracted standard info from prmon json
[2025-10-12 22:15:13] 2025-10-12 22:14:40,009 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:15:13] 2025-10-12 22:14:40,009 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:15:13] 2025-10-12 22:14:40,010 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:15:13] 2025-10-12 22:14:40,010 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:15:13] 2025-10-12 22:14:40,011 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:15:13] 2025-10-12 22:14:40,012 | INFO     | sum of square deviations: 24640462.0
[2025-10-12 22:15:13] 2025-10-12 22:14:40,012 | INFO     | sum of deviations: -106560961.00000001
[2025-10-12 22:15:13] 2025-10-12 22:14:40,012 | INFO     | mean x: 1760305841.0
[2025-10-12 22:15:13] 2025-10-12 22:14:40,012 | INFO     | mean y: 2684993.1860465114
[2025-10-12 22:15:13] 2025-10-12 22:14:40,013 | INFO     | -- intersect: 7615362144.729441
[2025-10-12 22:15:13] 2025-10-12 22:14:40,013 | INFO     | intersect: 7615362144.729441
[2025-10-12 22:15:13] 2025-10-12 22:14:40,013 | INFO     | chi2: 0.002287175816169635
[2025-10-12 22:15:13] 2025-10-12 22:14:40,013 | INFO     | -- intersect: 7615362144.729441
[2025-10-12 22:15:13] 2025-10-12 22:14:40,013 | INFO     | current memory leak: -4.32 B/s (using 43 data points, chi2=0.00)
[2025-10-12 22:15:13] 2025-10-12 22:14:40,014 | INFO     | could have reported an average CPU frequency of 2340 MHz (5 samples)
[2025-10-12 22:15:13] 2025-10-12 22:14:40,014 | INFO     | ..............................
[2025-10-12 22:15:13] 2025-10-12 22:14:40,014 | INFO     | . Timing measurements:
[2025-10-12 22:15:13] 2025-10-12 22:14:40,014 | INFO     | . get job = 0 s
[2025-10-12 22:15:13] 2025-10-12 22:14:40,015 | INFO     | . initial setup = 1 s
[2025-10-12 22:15:13] 2025-10-12 22:14:40,015 | INFO     | . payload setup = 8 s
[2025-10-12 22:15:13] 2025-10-12 22:14:40,015 | INFO     | . stage-in = 0 s
[2025-10-12 22:15:13] 2025-10-12 22:14:40,015 | INFO     | . payload execution = 3017 s
[2025-10-12 22:15:13] 2025-10-12 22:14:40,015 | INFO     | . stage-out = 0 s
[2025-10-12 22:15:13] 2025-10-12 22:14:40,015 | INFO     | . log creation = 0 s
[2025-10-12 22:15:13] 2025-10-12 22:14:40,015 | INFO     | ..............................
[2025-10-12 22:15:13] 2025-10-12 22:14:40,151 | INFO     | 
[2025-10-12 22:15:13] 2025-10-12 22:14:40,152 | INFO     | job summary report
[2025-10-12 22:15:13] 2025-10-12 22:14:40,152 | INFO     | --------------------------------------------------
[2025-10-12 22:15:13] 2025-10-12 22:14:40,152 | INFO     | PanDA job id: 6840530442
[2025-10-12 22:15:13] 2025-10-12 22:14:40,152 | INFO     | task id: 46676269
[2025-10-12 22:15:13] 2025-10-12 22:14:40,152 | INFO     | errors: (none)
[2025-10-12 22:15:13] 2025-10-12 22:14:40,152 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:15:13] 2025-10-12 22:14:40,152 | INFO     | pilot state: finished 
[2025-10-12 22:15:13] 2025-10-12 22:14:40,152 | INFO     | transexitcode: 0
[2025-10-12 22:15:13] 2025-10-12 22:14:40,153 | INFO     | exeerrorcode: 0
[2025-10-12 22:15:13] 2025-10-12 22:14:40,153 | INFO     | exeerrordiag: 
[2025-10-12 22:15:13] 2025-10-12 22:14:40,153 | INFO     | exitcode: 0
[2025-10-12 22:15:13] 2025-10-12 22:14:40,153 | INFO     | exitmsg: OK
[2025-10-12 22:15:13] 2025-10-12 22:14:40,153 | INFO     | cpuconsumptiontime: 31628 s
[2025-10-12 22:15:13] 2025-10-12 22:14:40,153 | INFO     | nevents: 400
[2025-10-12 22:15:13] 2025-10-12 22:14:40,153 | INFO     | neventsw: 0
[2025-10-12 22:15:13] 2025-10-12 22:14:40,153 | INFO     | pid: 69250
[2025-10-12 22:15:13] 2025-10-12 22:14:40,153 | INFO     | pgrp: 69250
[2025-10-12 22:15:13] 2025-10-12 22:14:40,153 | INFO     | corecount: 12
[2025-10-12 22:15:13] 2025-10-12 22:14:40,153 | INFO     | event service: False
[2025-10-12 22:15:13] 2025-10-12 22:14:40,154 | INFO     | sizes: {0: 2348579, 1: 2348834, 8: 2349096, 12: 2349124, 3029: 2374540, 3030: 2383540, 3033: 2383724, 3039: 2383950}
[2025-10-12 22:15:13] 2025-10-12 22:14:40,154 | INFO     | --------------------------------------------------
[2025-10-12 22:15:13] 2025-10-12 22:14:40,154 | INFO     | 
[2025-10-12 22:15:13] 2025-10-12 22:14:40,154 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-10-12 22:15:13] 2025-10-12 22:14:40,178 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,178 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,179 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,179 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,179 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,179 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,179 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,179 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,179 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,179 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,180 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,180 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,180 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,180 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,180 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,180 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,180 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,181 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:15:13] 2025-10-12 22:14:40,181 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,181 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:15:13] 2025-10-12 22:14:40,181 | INFO     | job 6840530442 has completed (purged errors)
[2025-10-12 22:15:13] 2025-10-12 22:14:40,181 | INFO     | overall cleanup function is called
[2025-10-12 22:15:13] 2025-10-12 22:14:40,373 | INFO     | PID=52631 has CPU usage=15.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 22:15:13] 2025-10-12 22:14:40,374 | INFO     | .. there are 17 such processes running
[2025-10-12 22:15:13] 2025-10-12 22:14:41,190 | INFO     | --- collectZombieJob: --- 10, [69250]
[2025-10-12 22:15:13] 2025-10-12 22:14:41,191 | INFO     | zombie collector waiting for pid 69250
[2025-10-12 22:15:13] 2025-10-12 22:14:41,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:15:13] 2025-10-12 22:14:41,191 | INFO     | collected zombie processes
[2025-10-12 22:15:13] 2025-10-12 22:14:41,191 | INFO     | will attempt to kill all subprocesses of pid=69250
[2025-10-12 22:15:13] 2025-10-12 22:14:41,803 | INFO     | process IDs to be killed: [69250] (in reverse order)
[2025-10-12 22:15:13] 2025-10-12 22:14:42,064 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:15:13] 2025-10-12 22:14:42,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:15:13] 2025-10-12 22:14:42,093 | INFO     | did not find any defunct processes belonging to 69250
[2025-10-12 22:15:13] 2025-10-12 22:14:42,119 | INFO     | did not find any defunct processes belonging to 69250
[2025-10-12 22:15:13] 2025-10-12 22:14:42,119 | INFO     | ready for new job
[2025-10-12 22:15:13] 2025-10-12 22:14:42,119 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:15:13] 2025-10-12 22:14:42,121 | INFO     | ***************************************
[2025-10-12 22:15:13] 2025-10-12 22:14:42,121 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:15:13] 2025-10-12 22:14:42,121 | INFO     | ***************************************
[2025-10-12 22:15:13] 2025-10-12 22:14:42,121 | INFO     | 
[2025-10-12 22:15:13] 2025-10-12 22:14:42,157 | INFO     | architecture information:
[2025-10-12 22:15:13] 2025-10-12 22:14:42,157 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:15:13] 2025-10-12 22:14:42,181 | INFO     | cat /etc/os-release:
[2025-10-12 22:15:13] NAME="CentOS Linux"
[2025-10-12 22:15:13] VERSION="7 (Core)"
[2025-10-12 22:15:13] ID="centos"
[2025-10-12 22:15:13] ID_LIKE="rhel fedora"
[2025-10-12 22:15:13] VERSION_ID="7"
[2025-10-12 22:15:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:15:13] ANSI_COLOR="0;31"
[2025-10-12 22:15:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:15:13] HOME_URL="https://www.centos.org/"
[2025-10-12 22:15:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:15:13] 
[2025-10-12 22:15:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:15:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:15:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:15:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:15:13] 
[2025-10-12 22:15:13] 2025-10-12 22:14:42,181 | INFO     | ***************************************
[2025-10-12 22:15:13] 2025-10-12 22:14:42,683 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-10-12 22:15:13] 2025-10-12 22:14:42,708 | INFO     | sufficient remaining disk space (1724234334208 B)
[2025-10-12 22:15:13] 2025-10-12 22:14:42,709 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:15:13] 2025-10-12 22:14:42,709 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:15:13] 2025-10-12 22:14:42,709 | INFO     | update_server=False
[2025-10-12 22:15:13] 2025-10-12 22:14:42,709 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:15:13] 2025-10-12 22:14:42,709 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:15:13] 2025-10-12 22:14:42,710 | INFO     | aborting loop
[2025-10-12 22:15:13] 2025-10-12 22:14:43,083 | INFO     | all job control threads have been joined
[2025-10-12 22:15:13] 2025-10-12 22:14:43,594 | INFO     | all data control threads have been joined
[2025-10-12 22:15:13] 2025-10-12 22:14:43,714 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:43,715 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:43,782 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:43,906 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:15:13] 2025-10-12 22:14:43,977 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:15:13] 2025-10-12 22:14:44,070 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:44,086 | INFO     | [job] control thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:44,098 | INFO     | all payload control threads have been joined
[2025-10-12 22:15:13] 2025-10-12 22:14:44,333 | INFO     | [job] validate thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:44,434 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:44,600 | INFO     | [data] control thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:44,705 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:44,806 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:44,838 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:45,102 | INFO     | [payload] control thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:45,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:15:13] 2025-10-12 22:14:45,910 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:46,122 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:47,146 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:15:13] 2025-10-12 22:14:47,982 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:53,294 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:15:13] 2025-10-12 22:14:54,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:15:13] 2025-10-12 22:14:55,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314502784832)>', '<ExcThread(monitor, started 140314064959232)>']
[2025-10-12 22:15:13] 2025-10-12 22:15:00,366 | INFO     | all workflow threads have been joined
[2025-10-12 22:15:13] 2025-10-12 22:15:00,367 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:15:13] 2025-10-12 22:15:00,367 | INFO     | traces error code: 0
[2025-10-12 22:15:13] 2025-10-12 22:15:00,367 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:15:13] 2025-10-12 22:15:13,418 | INFO     | PID=52631 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 22:15:13] 2025-10-12 22:15:13,419 | INFO     | .. there are 17 such processes running
[2025-10-12 22:15:13] 2025-10-12 22:15:13,419 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:15:13] 2025-10-12 22:15:13,419 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:15:13] 2025-10-12 22:15:13,419 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:15:13] 2025-10-12 22:15:13,419 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:15:13] 2025-10-12 22:15:13,419 | INFO     | [monitor] control thread has ended
[2025-10-12 22:15:13] 2025-10-12 22:15:13,583 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:15:13] 2025-10-12 22:15:13,587 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:15:13] 2025-10-12 22:15:13,590 [wrapper] pilotpid: 52631
[2025-10-12 22:15:13] 2025-10-12 22:15:13,593 [wrapper] Pilot exit status: 0
[2025-10-12 22:15:13] 2025-10-12 22:15:13,605 [wrapper] pandaids: 6840530442
[2025-10-12 22:15:13] 2025-10-12 22:15:13,778 [wrapper] cleanup supervisor_pilot  416911 52632
[2025-10-12 22:15:13] 2025-10-12 22:15:13,783 [wrapper] Test setup, not cleaning
[2025-10-12 22:15:13] 2025-10-12 22:15:13,786 [wrapper] apfmon messages muted
[2025-10-12 22:15:13] 2025-10-12 22:15:13,789 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:15:13] 2025-10-12 22:15:13,791 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:15:13]  *** Error codes and diagnostics ***
[2025-10-12 22:15:13]     "exeErrorCode": 0,
[2025-10-12 22:15:13]     "exeErrorDiag": "",
[2025-10-12 22:15:13]     "pilotErrorCode": 0,
[2025-10-12 22:15:13]     "pilotErrorDiag": "",
[2025-10-12 22:15:13]  *** Listing of results directory ***
[2025-10-12 22:15:13] total 401944
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc    557409 Oct 12 17:32 pilot3.tar.gz
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc      5112 Oct 12 17:50 queuedata.json
[2025-10-12 22:15:13] -rwx------ 1 boinc boinc     36292 Oct 12 17:50 runpilot2-wrapper.sh
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:15:13] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:23 run_atlas
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:23 job.xml
[2025-10-12 22:15:13] -rw-r--r-- 2 boinc boinc 219633296 Oct 12 21:23 EVNT.46676267._002121.pool.root.1
[2025-10-12 22:15:13] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:23 start_atlas.sh
[2025-10-12 22:15:13] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:23 shared
[2025-10-12 22:15:13] -rw-r--r-- 2 boinc boinc    569682 Oct 12 21:23 input.tar.gz
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:23 boinc_setup_complete
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc      9396 Oct 12 21:23 init_data.xml
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:23 boinc_lockfile
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc      2549 Oct 12 21:23 pandaJob.out
[2025-10-12 22:15:13] -rw------- 1 boinc boinc    975528 Oct 12 21:23 agis_schedconf.cvmfs.json
[2025-10-12 22:15:13] -rw------- 1 boinc boinc   1560580 Oct 12 21:23 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:15:13] drwx------ 5 boinc boinc      4096 Oct 12 21:23 pilot3
[2025-10-12 22:15:13] -rw------- 1 boinc boinc 186444012 Oct 12 22:13 HITS.46676269._085368.pool.root.1
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc       529 Oct 12 22:13 boinc_task_state.xml
[2025-10-12 22:15:13] -rw------- 1 boinc boinc      1025 Oct 12 22:14 memory_monitor_summary.json
[2025-10-12 22:15:13] -rw------- 1 boinc boinc    348581 Oct 12 22:14 log.46676269._085368.job.log.tgz.1
[2025-10-12 22:15:13] -rw------- 1 boinc boinc        95 Oct 12 22:14 pilot_heartbeat.json
[2025-10-12 22:15:13] -rw------- 1 boinc boinc      7742 Oct 12 22:14 heartbeat.json
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:15 boinc_mmap_file
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:15 wrapper_checkpoint.txt
[2025-10-12 22:15:13] -rw------- 1 boinc boinc       821 Oct 12 22:15 pilotlog.txt
[2025-10-12 22:15:13] -rw------- 1 boinc boinc    455047 Oct 12 22:15 log.46676269._085368.job.log.1
[2025-10-12 22:15:13] -rw------- 1 boinc boinc       357 Oct 12 22:15 output.list
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:15 runtime_log
[2025-10-12 22:15:13] -rw------- 1 boinc boinc    819200 Oct 12 22:15 result.tar.gz
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc      8672 Oct 12 22:15 runtime_log.err
[2025-10-12 22:15:13] -rw------- 1 boinc boinc       644 Oct 12 22:15 3uTKDmQOFS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRwkNDmqhhcDm.diag
[2025-10-12 22:15:13] -rw-r--r-- 1 boinc boinc     22036 Oct 12 22:15 stderr.txt
[2025-10-12 22:15:13] HITS file was successfully produced:
[2025-10-12 22:15:13] -rw------- 1 boinc boinc 186444012 Oct 12 22:13 shared/HITS.pool.root.1
[2025-10-12 22:15:13]  *** Contents of shared directory: ***
[2025-10-12 22:15:13] total 397948
[2025-10-12 22:15:13] -rw-r--r-- 2 boinc boinc 219633296 Oct 12 21:23 ATLAS.root_0
[2025-10-12 22:15:13] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:23 start_atlas.sh
[2025-10-12 22:15:13] -rw-r--r-- 2 boinc boinc    569682 Oct 12 21:23 input.tar.gz
[2025-10-12 22:15:13] -rw------- 1 boinc boinc 186444012 Oct 12 22:13 HITS.pool.root.1
[2025-10-12 22:15:13] -rw------- 1 boinc boinc    819200 Oct 12 22:15 result.tar.gz
22:15:15 (45406): run_atlas exited; CPU time 31814.754407
22:15:15 (45406): called boinc_finish(0)

</stderr_txt>
]]>

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