Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:58:50 (3406083): wrapper (7.7.26015): starting
16:58:50 (3406083): wrapper: running run_atlas (--nthreads 11)
[2025-10-12 16:58:50] Arguments: --nthreads 11
[2025-10-12 16:58:50] Threads: 11
[2025-10-12 16:58:50] Checking for CVMFS
[2025-10-12 16:58:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:58:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:58:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:58:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:58:51] 2.13.2.0 342865 27772 131248 151636 1 607 23510950 40960000 30476 16776704 0 207587580 99.774 116449403 46577 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:58:51] CVMFS is ok
[2025-10-12 16:58:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:58:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:58:51] Further information can be found at the LHC@home message board.
[2025-10-12 16:58:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:58:51] Checking for apptainer binary...
[2025-10-12 16:58:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:58:51] Running /usr/bin/apptainer --version
[2025-10-12 16:58:51] apptainer version 1.4.3-1.el9
[2025-10-12 16:58:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:58:52] c-208-36.aglt2.org
[2025-10-12 16:58:52] apptainer works
[2025-10-12 16:58:52] Set ATHENA_PROC_NUMBER=11
[2025-10-12 16:58:52] Set ATHENA_CORE_NUMBER=11
[2025-10-12 16:58:52] Starting ATLAS job with PandaID=6840225613
[2025-10-12 16:58:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:59:36]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:59:36] 2025-10-12 21:58:28,805 | INFO     | transferring file log.46676269._082680.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6840225613/log.46676269._082680.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 17:59:36] 2025-10-12 21:58:28,806 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6840225613/log.46676269._082680.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._082680.job
[2025-10-12 17:59:36] 2025-10-12 21:58:28,850 | INFO     | adding to output.list: log.46676269._082680.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/40/log.46676269._082680.job.log.tg
[2025-10-12 17:59:36] 2025-10-12 21:58:28,851 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:59:36] 2025-10-12 21:58:28,851 | INFO     | summary of transferred files:
[2025-10-12 17:59:36] 2025-10-12 21:58:28,851 | INFO     |  -- lfn=log.46676269._082680.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:59:36] 2025-10-12 21:58:28,851 | INFO     | stage-out finished correctly
[2025-10-12 17:59:36] 2025-10-12 21:58:29,013 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:59:36] 2025-10-12 21:58:29,835 | INFO     | monitor loop #231: job 0:6840225613 is in state 'finished'
[2025-10-12 17:59:36] 2025-10-12 21:58:29,836 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:59:36] 2025-10-12 21:58:30,085 | INFO     | time since job start (3548s) is within the limit (172800.0s)
[2025-10-12 17:59:36] 2025-10-12 21:58:31,935 | INFO     | job 6840225613 has state=finished
[2025-10-12 17:59:36] 2025-10-12 21:58:31,936 | INFO     | preparing for final server update for job 6840225613 in state='finished'
[2025-10-12 17:59:36] 2025-10-12 21:58:31,936 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:59:36] 2025-10-12 21:58:31,936 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:59:36] 2025-10-12 21:58:31,936 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:59:36] 2025-10-12 21:58:31,936 | INFO     | job 6840225613 has finished - writing final server update
[2025-10-12 17:59:36] 2025-10-12 21:58:31,937 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:59:36] 2025-10-12 21:58:31,937 | INFO     | executing command: lscpu
[2025-10-12 17:59:36] 2025-10-12 21:58:32,010 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:59:36] 2025-10-12 21:58:32,096 | INFO     | time since job start (3550s) is within the limit (172800.0s)
[2025-10-12 17:59:36] 2025-10-12 21:58:32,348 | INFO     | monitor loop #232: job 0:6840225613 is in state 'finished'
[2025-10-12 17:59:36] 2025-10-12 21:58:32,348 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:59:36] 2025-10-12 21:58:34,218 | INFO     | PID=3410702 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:59:36] 2025-10-12 21:58:34,220 | INFO     | .. there are 28 such processes running
[2025-10-12 17:59:36] 2025-10-12 21:58:34,875 | INFO     | monitor loop #233: job 0:6840225613 is in state 'finished'
[2025-10-12 17:59:36] 2025-10-12 21:58:34,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:59:36] 2025-10-12 21:58:35,220 | INFO     | time since job start (3553s) is within the limit (172800.0s)
[2025-10-12 17:59:36] 2025-10-12 21:58:37,238 | INFO     | time since job start (3555s) is within the limit (172800.0s)
[2025-10-12 17:59:36] 2025-10-12 21:58:37,394 | INFO     | monitor loop #234: job 0:6840225613 is in state 'finished'
[2025-10-12 17:59:36] 2025-10-12 21:58:37,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:59:36] 2025-10-12 21:58:39,244 | INFO     | time since job start (3557s) is within the limit (172800.0s)
[2025-10-12 17:59:36] 2025-10-12 21:58:39,918 | INFO     | monitor loop #235: job 0:6840225613 is in state 'finished'
[2025-10-12 17:59:36] 2025-10-12 21:58:39,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:59:36] 2025-10-12 21:58:41,193 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 17:59:36] 2025-10-12 21:58:41,198 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.0069453125016
[2025-10-12 17:59:36] 2025-10-12 21:58:41,211 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6840225613/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:59:36] 2025-10-12 21:58:41,212 | INFO     | extracted standard info from prmon json
[2025-10-12 17:59:36] 2025-10-12 21:58:41,213 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:59:36] 2025-10-12 21:58:41,213 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:59:36] 2025-10-12 21:58:41,213 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:59:36] 2025-10-12 21:58:41,213 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:59:36] 2025-10-12 21:58:41,214 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:59:36] 2025-10-12 21:58:41,214 | INFO     | sum of square deviations: 38743274.87999997
[2025-10-12 17:59:36] 2025-10-12 21:58:41,214 | INFO     | sum of deviations: 3523523116.599999
[2025-10-12 17:59:36] 2025-10-12 21:58:41,214 | INFO     | mean x: 1760304625.68
[2025-10-12 17:59:36] 2025-10-12 21:58:41,214 | INFO     | mean y: 2572582.1
[2025-10-12 17:59:36] 2025-10-12 21:58:41,214 | INFO     | -- intersect: -160089057773.16522
[2025-10-12 17:59:36] 2025-10-12 21:58:41,214 | INFO     | intersect: -160089057773.16522
[2025-10-12 17:59:36] 2025-10-12 21:58:41,214 | INFO     | chi2: 0.15391596825848813
[2025-10-12 17:59:36] 2025-10-12 21:58:41,214 | INFO     | -- intersect: -160089057773.16522
[2025-10-12 17:59:36] 2025-10-12 21:58:41,214 | INFO     | current memory leak: 90.95 B/s (using 50 data points, chi2=0.15)
[2025-10-12 17:59:36] 2025-10-12 21:58:41,215 | INFO     | could have reported an average CPU frequency of 3783 MHz (5 samples)
[2025-10-12 17:59:36] 2025-10-12 21:58:41,215 | INFO     | ..............................
[2025-10-12 17:59:36] 2025-10-12 21:58:41,215 | INFO     | . Timing measurements:
[2025-10-12 17:59:36] 2025-10-12 21:58:41,215 | INFO     | . get job = 0 s
[2025-10-12 17:59:36] 2025-10-12 21:58:41,215 | INFO     | . initial setup = 3 s
[2025-10-12 17:59:36] 2025-10-12 21:58:41,215 | INFO     | . payload setup = 14 s
[2025-10-12 17:59:36] 2025-10-12 21:58:41,215 | INFO     | . stage-in = 0 s
[2025-10-12 17:59:36] 2025-10-12 21:58:41,215 | INFO     | . payload execution = 3486 s
[2025-10-12 17:59:36] 2025-10-12 21:58:41,215 | INFO     | . stage-out = 1 s
[2025-10-12 17:59:36] 2025-10-12 21:58:41,215 | INFO     | . log creation = 0 s
[2025-10-12 17:59:36] 2025-10-12 21:58:41,215 | INFO     | ..............................
[2025-10-12 17:59:36] 2025-10-12 21:58:41,256 | INFO     | time since job start (3559s) is within the limit (172800.0s)
[2025-10-12 17:59:36] 2025-10-12 21:58:41,283 | INFO     | 
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | job summary report
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | --------------------------------------------------
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | PanDA job id: 6840225613
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | task id: 46676269
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | errors: (none)
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | pilot state: finished 
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | transexitcode: 0
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | exeerrorcode: 0
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | exeerrordiag: 
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | exitcode: 0
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | exitmsg: OK
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | cpuconsumptiontime: 23366 s
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | nevents: 400
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | neventsw: 0
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | pid: 3423280
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | pgrp: 3423280
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | corecount: 11
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | event service: False
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 15: 2349175, 23: 2349203, 3505: 2374976, 3508: 2384030, 3520: 2384200}
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | --------------------------------------------------
[2025-10-12 17:59:36] 2025-10-12 21:58:41,284 | INFO     | 
[2025-10-12 17:59:36] 2025-10-12 21:58:41,285 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 17:59:36] 2025-10-12 21:58:41,313 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,313 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,313 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,313 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,313 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,313 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,313 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,313 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,313 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | job 6840225613 has completed (purged errors)
[2025-10-12 17:59:36] 2025-10-12 21:58:41,314 | INFO     | overall cleanup function is called
[2025-10-12 17:59:36] 2025-10-12 21:58:42,322 | INFO     | --- collectZombieJob: --- 10, [3423280]
[2025-10-12 17:59:36] 2025-10-12 21:58:42,323 | INFO     | zombie collector waiting for pid 3423280
[2025-10-12 17:59:36] 2025-10-12 21:58:42,323 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:59:36] 2025-10-12 21:58:42,323 | INFO     | collected zombie processes
[2025-10-12 17:59:36] 2025-10-12 21:58:42,323 | INFO     | will attempt to kill all subprocesses of pid=3423280
[2025-10-12 17:59:36] 2025-10-12 21:58:43,116 | INFO     | process IDs to be killed: [3423280] (in reverse order)
[2025-10-12 17:59:36] 2025-10-12 21:58:43,273 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:59:36] 2025-10-12 21:58:43,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:59:36] 2025-10-12 21:58:43,296 | INFO     | did not find any defunct processes belonging to 3423280
[2025-10-12 17:59:36] 2025-10-12 21:58:43,320 | INFO     | did not find any defunct processes belonging to 3423280
[2025-10-12 17:59:36] 2025-10-12 21:58:43,320 | INFO     | ready for new job
[2025-10-12 17:59:36] 2025-10-12 21:58:43,320 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:59:36] 2025-10-12 21:58:43,322 | INFO     | ***************************************
[2025-10-12 17:59:36] 2025-10-12 21:58:43,322 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:59:36] 2025-10-12 21:58:43,322 | INFO     | ***************************************
[2025-10-12 17:59:36] 2025-10-12 21:58:43,322 | INFO     | 
[2025-10-12 17:59:36] 2025-10-12 21:58:43,327 | INFO     | architecture information:
[2025-10-12 17:59:36] 2025-10-12 21:58:43,327 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:59:36] 2025-10-12 21:58:43,348 | INFO     | cat /etc/os-release:
[2025-10-12 17:59:36] NAME="CentOS Linux"
[2025-10-12 17:59:36] VERSION="7 (Core)"
[2025-10-12 17:59:36] ID="centos"
[2025-10-12 17:59:36] ID_LIKE="rhel fedora"
[2025-10-12 17:59:36] VERSION_ID="7"
[2025-10-12 17:59:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:59:36] ANSI_COLOR="0;31"
[2025-10-12 17:59:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:59:36] HOME_URL="https://www.centos.org/"
[2025-10-12 17:59:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:59:36] 
[2025-10-12 17:59:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:59:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:59:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:59:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:59:36] 
[2025-10-12 17:59:36] 2025-10-12 21:58:43,348 | INFO     | ***************************************
[2025-10-12 17:59:36] 2025-10-12 21:58:43,852 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 17:59:36] 2025-10-12 21:58:43,878 | INFO     | sufficient remaining disk space (170673569792 B)
[2025-10-12 17:59:36] 2025-10-12 21:58:43,879 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:59:36] 2025-10-12 21:58:43,879 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:59:36] 2025-10-12 21:58:43,879 | INFO     | update_server=False
[2025-10-12 17:59:36] 2025-10-12 21:58:43,879 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:59:36] 2025-10-12 21:58:43,886 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:59:36] 2025-10-12 21:58:43,887 | INFO     | aborting loop
[2025-10-12 17:59:36] 2025-10-12 21:58:44,189 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:59:36] 2025-10-12 21:58:44,409 | INFO     | all data control threads have been joined
[2025-10-12 17:59:36] 2025-10-12 21:58:44,580 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:59:36] 2025-10-12 21:58:44,601 | INFO     | all payload control threads have been joined
[2025-10-12 17:59:36] 2025-10-12 21:58:44,893 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:44,894 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:44,947 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:45,014 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:45,015 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:45,148 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:45,300 | INFO     | all job control threads have been joined
[2025-10-12 17:59:36] 2025-10-12 21:58:45,417 | INFO     | [data] control thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:45,607 | INFO     | [payload] control thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:45,700 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:46,305 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:59:36] 2025-10-12 21:58:46,306 | INFO     | [job] control thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:46,311 | INFO     | [job] validate thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:46,314 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:46,452 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:46,587 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:47,311 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:58:48,199 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:59:36] 2025-10-12 21:59:15,265 | INFO     | PID=3410702 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:59:36] 2025-10-12 21:59:15,265 | INFO     | .. there are 28 such processes running
[2025-10-12 17:59:36] 2025-10-12 21:59:15,266 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:59:36] 2025-10-12 21:59:15,266 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:59:36] 2025-10-12 21:59:15,266 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:59:36] 2025-10-12 21:59:17,665 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-10-12 17:59:36] 2025-10-12 21:59:27,717 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:59:36] 2025-10-12 21:59:28,733 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140292084320064)>', '<ExcThread(monitor, started 140291575097088)>']
[2025-10-12 17:59:36] 2025-10-12 21:59:29,365 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:59:36] 2025-10-12 21:59:29,366 | INFO     | [monitor] control thread has ended
[2025-10-12 17:59:36] 2025-10-12 21:59:33,761 | INFO     | all workflow threads have been joined
[2025-10-12 17:59:36] 2025-10-12 21:59:33,762 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:59:36] 2025-10-12 21:59:33,762 | INFO     | traces error code: 0
[2025-10-12 17:59:36] 2025-10-12 21:59:33,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:59:36] 2025-10-12 21:59:35,165 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:59:36] 2025-10-12 21:59:35,215 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:59:36] 2025-10-12 21:59:35,298 [wrapper] pilotpid: 3410702
[2025-10-12 17:59:36] 2025-10-12 21:59:35,330 [wrapper] Pilot exit status: 0
[2025-10-12 17:59:36] 2025-10-12 21:59:35,431 [wrapper] pandaids: 6840225613
[2025-10-12 17:59:36] 2025-10-12 21:59:35,809 [wrapper] cleanup supervisor_pilot 3783094 3410703
[2025-10-12 17:59:36] 2025-10-12 21:59:35,818 [wrapper] Test setup, not cleaning
[2025-10-12 17:59:36] 2025-10-12 21:59:35,840 [wrapper] apfmon messages muted
[2025-10-12 17:59:36] 2025-10-12 21:59:35,843 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:59:36] 2025-10-12 21:59:35,845 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:59:36]  *** Error codes and diagnostics ***
[2025-10-12 17:59:36]     "exeErrorCode": 0,
[2025-10-12 17:59:36]     "exeErrorDiag": "",
[2025-10-12 17:59:36]     "pilotErrorCode": 0,
[2025-10-12 17:59:36]     "pilotErrorDiag": "",
[2025-10-12 17:59:36]  *** Listing of results directory ***
[2025-10-12 17:59:36] total 409184
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 17:59:36] -rwx------. 1 boincer umatlas     36292 Oct 12 11:47 runpilot2-wrapper.sh
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 11:47 queuedata.json
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas       100 Oct 12 16:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:59:36] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 16:58 run_atlas
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas       105 Oct 12 16:58 job.xml
[2025-10-12 17:59:36] -rw-r--r--. 2 boincer umatlas 223275661 Oct 12 16:58 EVNT.46676267._004589.pool.root.1
[2025-10-12 17:59:36] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:58 start_atlas.sh
[2025-10-12 17:59:36] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 16:58 shared
[2025-10-12 17:59:36] -rw-r--r--. 2 boincer umatlas    569684 Oct 12 16:58 input.tar.gz
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas         0 Oct 12 16:58 boinc_lockfile
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 16:58 pandaJob.out
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas    975536 Oct 12 16:59 agis_schedconf.cvmfs.json
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas   1560580 Oct 12 16:59 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:59:36] drwx------. 5 boincer umatlas      4096 Oct 12 16:59 pilot3
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas      7174 Oct 12 17:57 init_data.xml
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas 190114985 Oct 12 17:57 HITS.46676269._082680.pool.root.1
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas       529 Oct 12 17:57 boinc_task_state.xml
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas      1045 Oct 12 17:58 memory_monitor_summary.json
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas    360471 Oct 12 17:58 log.46676269._082680.job.log.tgz.1
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas        95 Oct 12 17:58 pilot_heartbeat.json
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas      7804 Oct 12 17:58 heartbeat.json
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas        27 Oct 12 17:59 wrapper_checkpoint.txt
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas      4825 Oct 12 17:59 pilotlog.txt
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas    494924 Oct 12 17:59 log.46676269._082680.job.log.1
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas       357 Oct 12 17:59 output.list
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas       620 Oct 12 17:59 runtime_log
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas    870400 Oct 12 17:59 result.tar.gz
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas       657 Oct 12 17:59 rZWNDmZTDS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmYLUMDm8jEhvm.diag
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas      8705 Oct 12 17:59 runtime_log.err
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 17:59 boinc_mmap_file
[2025-10-12 17:59:36] -rw-r--r--. 1 boincer umatlas     22558 Oct 12 17:59 stderr.txt
[2025-10-12 17:59:36] HITS file was successfully produced:
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas 190114985 Oct 12 17:57 shared/HITS.pool.root.1
[2025-10-12 17:59:36]  *** Contents of shared directory: ***
[2025-10-12 17:59:36] total 405140
[2025-10-12 17:59:36] -rw-r--r--. 2 boincer umatlas 223275661 Oct 12 16:58 ATLAS.root_0
[2025-10-12 17:59:36] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:58 start_atlas.sh
[2025-10-12 17:59:36] -rw-r--r--. 2 boincer umatlas    569684 Oct 12 16:58 input.tar.gz
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas 190114985 Oct 12 17:57 HITS.pool.root.1
[2025-10-12 17:59:36] -rw-------. 1 boincer umatlas    870400 Oct 12 17:59 result.tar.gz
17:59:37 (3406083): run_atlas exited; CPU time 23467.892826
17:59:37 (3406083): called boinc_finish(0)

</stderr_txt>
]]>

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