Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:54:34 (28688): wrapper (7.7.26015): starting
16:54:34 (28688): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:54:34] Arguments: --nthreads 8
[2025-10-12 16:54:34] Threads: 8
[2025-10-12 16:54:34] Checking for CVMFS
[2025-10-12 16:54:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:54:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:54:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:54:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:54:34] 2.11.2.0 10816 53361 129336 151636 2 59 16975360 18432001 1833 130560 0 47082309 99.975 2387122 30281 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:54:34] CVMFS is ok
[2025-10-12 16:54:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:54:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:54:34] Further information can be found at the LHC@home message board.
[2025-10-12 16:54:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:54:34] Checking for apptainer binary...
[2025-10-12 16:54:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:54:34] Running /usr/bin/apptainer --version
[2025-10-12 16:54:34] apptainer version 1.3.2-1.el7
[2025-10-12 16:54:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:54:35] c-206-11.aglt2.org
[2025-10-12 16:54:35] apptainer works
[2025-10-12 16:54:35] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:54:35] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:54:35] Starting ATLAS job with PandaID=6840429330
[2025-10-12 16:54:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:58:08]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:58:08] 2025-10-12 23:57:20,241 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:58:08] 2025-10-12 23:57:20,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:58:08] 2025-10-12 23:57:20,242 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:58:08] 2025-10-12 23:57:20,247 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:58:08] 2025-10-12 23:57:20,247 | INFO     | sum of square deviations: 1808350185.0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,249 | INFO     | sum of deviations: 2047845548.5
[2025-10-12 19:58:08] 2025-10-12 23:57:20,249 | INFO     | mean x: 1760307969.5
[2025-10-12 19:58:08] 2025-10-12 23:57:20,249 | INFO     | mean y: 2466468.4944444443
[2025-10-12 19:58:08] 2025-10-12 23:57:20,249 | INFO     | -- intersect: -1990974220.8318038
[2025-10-12 19:58:08] 2025-10-12 23:57:20,250 | INFO     | intersect: -1990974220.8318038
[2025-10-12 19:58:08] 2025-10-12 23:57:20,250 | INFO     | chi2: 2.1811870845139554
[2025-10-12 19:58:08] 2025-10-12 23:57:20,251 | INFO     | sum of square deviations: 1661798600.0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,251 | INFO     | sum of deviations: 13614279143.999989
[2025-10-12 19:58:08] 2025-10-12 23:57:20,251 | INFO     | mean x: 1760307817.0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,252 | INFO     | mean y: 2478227.56
[2025-10-12 19:58:08] 2025-10-12 23:57:20,252 | INFO     | -- intersect: -14418837327.768578
[2025-10-12 19:58:08] 2025-10-12 23:57:20,252 | INFO     | intersect: -14418837327.768578
[2025-10-12 19:58:08] 2025-10-12 23:57:20,252 | INFO     | chi2: 1.4131372296914497
[2025-10-12 19:58:08] 2025-10-12 23:57:20,252 | INFO     | current chi2=1.4131372296914497 (change=35.212470322950495 %)
[2025-10-12 19:58:08] 2025-10-12 23:57:20,252 | INFO     | sum of square deviations: 1523386702.5
[2025-10-12 19:58:08] 2025-10-12 23:57:20,253 | INFO     | sum of deviations: 13147069713.0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,253 | INFO     | mean x: 1760307664.5
[2025-10-12 19:58:08] 2025-10-12 23:57:20,253 | INFO     | mean y: 2477712.6588235293
[2025-10-12 19:58:08] 2025-10-12 23:57:20,254 | INFO     | -- intersect: -15189257612.016375
[2025-10-12 19:58:08] 2025-10-12 23:57:20,254 | INFO     | intersect: -15189257612.016375
[2025-10-12 19:58:08] 2025-10-12 23:57:20,254 | INFO     | chi2: 1.4142418146948195
[2025-10-12 19:58:08] 2025-10-12 23:57:20,254 | INFO     | current chi2=1.4142418146948195 (change=-0.07816544495193294 %)
[2025-10-12 19:58:08] 2025-10-12 23:57:20,254 | INFO     | right removable region: 169
[2025-10-12 19:58:08] 2025-10-12 23:57:20,254 | INFO     | sum of square deviations: 1661798600.0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,255 | INFO     | sum of deviations: -22375804547.999996
[2025-10-12 19:58:08] 2025-10-12 23:57:20,255 | INFO     | mean x: 1760308122.0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,255 | INFO     | mean y: 2491531.0857142857
[2025-10-12 19:58:08] 2025-10-12 23:57:20,256 | INFO     | -- intersect: 23704708202.90679
[2025-10-12 19:58:08] 2025-10-12 23:57:20,256 | INFO     | intersect: 23704708202.90679
[2025-10-12 19:58:08] 2025-10-12 23:57:20,256 | INFO     | chi2: 0.8836141167869128
[2025-10-12 19:58:08] 2025-10-12 23:57:20,256 | INFO     | current chi2=0.8836141167869128 (change=59.489301809073716 %)
[2025-10-12 19:58:08] 2025-10-12 23:57:20,256 | INFO     | sum of square deviations: 1523386702.5
[2025-10-12 19:58:08] 2025-10-12 23:57:20,257 | INFO     | sum of deviations: -18499151244.5
[2025-10-12 19:58:08] 2025-10-12 23:57:20,257 | INFO     | mean x: 1760308274.5
[2025-10-12 19:58:08] 2025-10-12 23:57:20,257 | INFO     | mean y: 2487215.6529411767
[2025-10-12 19:58:08] 2025-10-12 23:57:20,257 | INFO     | -- intersect: 21378680767.480484
[2025-10-12 19:58:08] 2025-10-12 23:57:20,257 | INFO     | intersect: 21378680767.480484
[2025-10-12 19:58:08] 2025-10-12 23:57:20,258 | INFO     | chi2: 0.8655941898728057
[2025-10-12 19:58:08] 2025-10-12 23:57:20,258 | INFO     | current chi2=0.8655941898728057 (change=2.0393434839670768 %)
[2025-10-12 19:58:08] 2025-10-12 23:57:20,258 | INFO     | left removable region: 20
[2025-10-12 19:58:08] 2025-10-12 23:57:20,258 | INFO     | sum of square deviations: 1025693650.0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,259 | INFO     | sum of deviations: 2288771850.0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,259 | INFO     | mean x: 1760308244.0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,259 | INFO     | mean y: 2487964.0738255032
[2025-10-12 19:58:08] 2025-10-12 23:57:20,259 | INFO     | -- intersect: -3925530851.47615
[2025-10-12 19:58:08] 2025-10-12 23:57:20,259 | INFO     | intersect: -3925530851.47615
[2025-10-12 19:58:08] 2025-10-12 23:57:20,260 | INFO     | chi2: 0.000296839548301307
[2025-10-12 19:58:08] 2025-10-12 23:57:20,260 | INFO     | -- intersect: -3925530851.47615
[2025-10-12 19:58:08] 2025-10-12 23:57:20,260 | INFO     | current memory leak: 2.23 B/s (using 149 data points, chi2=0.00)
[2025-10-12 19:58:08] 2025-10-12 23:57:20,260 | INFO     | could have reported an average CPU frequency of 2544 MHz (9 samples)
[2025-10-12 19:58:08] 2025-10-12 23:57:20,260 | INFO     | ..............................
[2025-10-12 19:58:08] 2025-10-12 23:57:20,260 | INFO     | . Timing measurements:
[2025-10-12 19:58:08] 2025-10-12 23:57:20,261 | INFO     | . get job = 0 s
[2025-10-12 19:58:08] 2025-10-12 23:57:20,261 | INFO     | . initial setup = 2 s
[2025-10-12 19:58:08] 2025-10-12 23:57:20,261 | INFO     | . payload setup = 5 s
[2025-10-12 19:58:08] 2025-10-12 23:57:20,261 | INFO     | . stage-in = 0 s
[2025-10-12 19:58:08] 2025-10-12 23:57:20,261 | INFO     | . payload execution = 10924 s
[2025-10-12 19:58:08] 2025-10-12 23:57:20,261 | INFO     | . stage-out = 2 s
[2025-10-12 19:58:08] 2025-10-12 23:57:20,261 | INFO     | . log creation = 0 s
[2025-10-12 19:58:08] 2025-10-12 23:57:20,261 | INFO     | ..............................
[2025-10-12 19:58:08] 2025-10-12 23:57:20,854 | INFO     | 
[2025-10-12 19:58:08] 2025-10-12 23:57:20,855 | INFO     | job summary report
[2025-10-12 19:58:08] 2025-10-12 23:57:20,855 | INFO     | --------------------------------------------------
[2025-10-12 19:58:08] 2025-10-12 23:57:20,855 | INFO     | PanDA job id: 6840429330
[2025-10-12 19:58:08] 2025-10-12 23:57:20,855 | INFO     | task id: 46676269
[2025-10-12 19:58:08] 2025-10-12 23:57:20,855 | INFO     | errors: (none)
[2025-10-12 19:58:08] 2025-10-12 23:57:20,856 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:58:08] 2025-10-12 23:57:20,856 | INFO     | pilot state: finished 
[2025-10-12 19:58:08] 2025-10-12 23:57:20,856 | INFO     | transexitcode: 0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,856 | INFO     | exeerrorcode: 0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,856 | INFO     | exeerrordiag: 
[2025-10-12 19:58:08] 2025-10-12 23:57:20,856 | INFO     | exitcode: 0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,857 | INFO     | exitmsg: OK
[2025-10-12 19:58:08] 2025-10-12 23:57:20,857 | INFO     | cpuconsumptiontime: 81984 s
[2025-10-12 19:58:08] 2025-10-12 23:57:20,857 | INFO     | nevents: 400
[2025-10-12 19:58:08] 2025-10-12 23:57:20,857 | INFO     | neventsw: 0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,857 | INFO     | pid: 7907
[2025-10-12 19:58:08] 2025-10-12 23:57:20,857 | INFO     | pgrp: 7907
[2025-10-12 19:58:08] 2025-10-12 23:57:20,857 | INFO     | corecount: 8
[2025-10-12 19:58:08] 2025-10-12 23:57:20,858 | INFO     | event service: False
[2025-10-12 19:58:08] 2025-10-12 23:57:20,858 | INFO     | sizes: {0: 2348635, 1: 2348834, 4: 2349096, 12: 2349124, 10933: 2378309, 10936: 2387491, 10939: 2387693}
[2025-10-12 19:58:08] 2025-10-12 23:57:20,858 | INFO     | --------------------------------------------------
[2025-10-12 19:58:08] 2025-10-12 23:57:20,858 | INFO     | 
[2025-10-12 19:58:08] 2025-10-12 23:57:20,858 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 19:58:08] 2025-10-12 23:57:20,877 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,877 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,877 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,877 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,877 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,878 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,878 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,878 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,878 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,878 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,879 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,879 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,879 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,879 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,879 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,879 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,880 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,880 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:58:08] 2025-10-12 23:57:20,880 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,880 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:58:08] 2025-10-12 23:57:20,880 | INFO     | job 6840429330 has completed (purged errors)
[2025-10-12 19:58:08] 2025-10-12 23:57:20,881 | INFO     | overall cleanup function is called
[2025-10-12 19:58:08] 2025-10-12 23:57:21,888 | INFO     | --- collectZombieJob: --- 10, [7907]
[2025-10-12 19:58:08] 2025-10-12 23:57:21,889 | INFO     | zombie collector waiting for pid 7907
[2025-10-12 19:58:08] 2025-10-12 23:57:21,889 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:58:08] 2025-10-12 23:57:21,889 | INFO     | collected zombie processes
[2025-10-12 19:58:08] 2025-10-12 23:57:21,889 | INFO     | will attempt to kill all subprocesses of pid=7907
[2025-10-12 19:58:08] 2025-10-12 23:57:22,050 | INFO     | process IDs to be killed: [7907] (in reverse order)
[2025-10-12 19:58:08] 2025-10-12 23:57:22,107 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:58:08] 2025-10-12 23:57:22,138 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:58:08] 2025-10-12 23:57:22,143 | INFO     | did not find any defunct processes belonging to 7907
[2025-10-12 19:58:08] 2025-10-12 23:57:22,148 | INFO     | did not find any defunct processes belonging to 7907
[2025-10-12 19:58:08] 2025-10-12 23:57:22,149 | INFO     | ready for new job
[2025-10-12 19:58:08] 2025-10-12 23:57:22,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:58:08] 2025-10-12 23:57:22,151 | INFO     | ***************************************
[2025-10-12 19:58:08] 2025-10-12 23:57:22,151 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:58:08] 2025-10-12 23:57:22,151 | INFO     | ***************************************
[2025-10-12 19:58:08] 2025-10-12 23:57:22,151 | INFO     | 
[2025-10-12 19:58:08] 2025-10-12 23:57:22,153 | INFO     | architecture information:
[2025-10-12 19:58:08] 2025-10-12 23:57:22,153 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:58:08] 2025-10-12 23:57:22,167 | INFO     | cat /etc/os-release:
[2025-10-12 19:58:08] NAME="CentOS Linux"
[2025-10-12 19:58:08] VERSION="7 (Core)"
[2025-10-12 19:58:08] ID="centos"
[2025-10-12 19:58:08] ID_LIKE="rhel fedora"
[2025-10-12 19:58:08] VERSION_ID="7"
[2025-10-12 19:58:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:58:08] ANSI_COLOR="0;31"
[2025-10-12 19:58:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:58:08] HOME_URL="https://www.centos.org/"
[2025-10-12 19:58:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:58:08] 
[2025-10-12 19:58:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:58:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:58:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:58:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:58:08] 
[2025-10-12 19:58:08] 2025-10-12 23:57:22,167 | INFO     | ***************************************
[2025-10-12 19:58:08] 2025-10-12 23:57:22,671 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 19:58:08] 2025-10-12 23:57:22,697 | INFO     | sufficient remaining disk space (28137488384 B)
[2025-10-12 19:58:08] 2025-10-12 23:57:22,698 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:58:08] 2025-10-12 23:57:22,698 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:58:08] 2025-10-12 23:57:22,698 | INFO     | update_server=False
[2025-10-12 19:58:08] 2025-10-12 23:57:22,698 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:58:08] 2025-10-12 23:57:22,699 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:58:08] 2025-10-12 23:57:23,100 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:58:08] 2025-10-12 23:57:23,407 | INFO     | all job control threads have been joined
[2025-10-12 19:58:08] 2025-10-12 23:57:23,630 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:58:08] 2025-10-12 23:57:23,630 | INFO     | aborting loop
[2025-10-12 19:58:08] 2025-10-12 23:57:23,654 | INFO     | all data control threads have been joined
[2025-10-12 19:58:08] 2025-10-12 23:57:23,705 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:24,162 | INFO     | all payload control threads have been joined
[2025-10-12 19:58:08] 2025-10-12 23:57:24,412 | INFO     | [job] control thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:24,465 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:24,474 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:24,520 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:24,635 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:24,657 | INFO     | [data] control thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:24,702 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:24,705 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:24,826 | INFO     | [job] validate thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:24,851 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:25,080 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:25,168 | INFO     | [payload] control thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:25,203 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:25,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:58:08] 2025-10-12 23:57:26,383 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:27,105 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:58:08] 2025-10-12 23:57:52,404 | INFO     | PID=32384 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:58:08] 2025-10-12 23:57:52,404 | INFO     | .. there are 3 such processes running
[2025-10-12 19:58:08] 2025-10-12 23:57:52,405 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:58:08] 2025-10-12 23:57:52,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:58:08] 2025-10-12 23:57:52,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:58:08] 2025-10-12 23:58:02,854 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:58:08] 2025-10-12 23:58:03,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140262304855872)>', '<ExcThread(monitor, started 140261862655744)>']
[2025-10-12 19:58:08] 2025-10-12 23:58:04,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:58:08] 2025-10-12 23:58:04,467 | INFO     | [monitor] control thread has ended
[2025-10-12 19:58:08] 2025-10-12 23:58:08,543 | INFO     | all workflow threads have been joined
[2025-10-12 19:58:08] 2025-10-12 23:58:08,543 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:58:08] 2025-10-12 23:58:08,543 | INFO     | traces error code: 0
[2025-10-12 19:58:08] 2025-10-12 23:58:08,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:58:08] 2025-10-12 23:58:08,670 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:58:08] 2025-10-12 23:58:08,673 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:58:08] 2025-10-12 23:58:08,675 [wrapper] pilotpid: 32384
[2025-10-12 19:58:08] 2025-10-12 23:58:08,681 [wrapper] Pilot exit status: 0
[2025-10-12 19:58:08] 2025-10-12 23:58:08,691 [wrapper] pandaids: 6840429330
[2025-10-12 19:58:08] 2025-10-12 23:58:08,725 [wrapper] cleanup supervisor_pilot 26332 32385
[2025-10-12 19:58:08] 2025-10-12 23:58:08,727 [wrapper] Test setup, not cleaning
[2025-10-12 19:58:08] 2025-10-12 23:58:08,729 [wrapper] apfmon messages muted
[2025-10-12 19:58:08] 2025-10-12 23:58:08,731 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:58:08] 2025-10-12 23:58:08,733 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:58:08]  *** Error codes and diagnostics ***
[2025-10-12 19:58:08]     "exeErrorCode": 0,
[2025-10-12 19:58:08]     "exeErrorDiag": "",
[2025-10-12 19:58:08]     "pilotErrorCode": 0,
[2025-10-12 19:58:08]     "pilotErrorDiag": "",
[2025-10-12 19:58:08]  *** Listing of results directory ***
[2025-10-12 19:58:08] total 414380
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 13:17 pilot3.tar.gz
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 13:20 queuedata.json
[2025-10-12 19:58:08] -rwx------ 1 boincer umatlas     36292 Oct 12 13:21 runpilot2-wrapper.sh
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas       100 Oct 12 16:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:58:08] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 16:54 run_atlas
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas       105 Oct 12 16:54 job.xml
[2025-10-12 19:58:08] -rw-r--r-- 2 boincer umatlas 221512634 Oct 12 16:54 EVNT.46676267._004812.pool.root.1
[2025-10-12 19:58:08] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 16:54 start_atlas.sh
[2025-10-12 19:58:08] drwxrwx--x 2 boincer umatlas      4096 Oct 12 16:54 shared
[2025-10-12 19:58:08] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 16:54 input.tar.gz
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas         0 Oct 12 16:54 boinc_lockfile
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 16:54 pandaJob.out
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas    975536 Oct 12 16:54 agis_schedconf.cvmfs.json
[2025-10-12 19:58:08] drwx------ 5 boincer umatlas      4096 Oct 12 16:54 pilot3
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 19:56 init_data.xml
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas       530 Oct 12 19:56 boinc_task_state.xml
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas 195012551 Oct 12 19:56 HITS.46676269._084676.pool.root.1
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas      1054 Oct 12 19:57 memory_monitor_summary.json
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas   1560580 Oct 12 19:57 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas    410921 Oct 12 19:57 log.46676269._084676.job.log.tgz.1
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas      7856 Oct 12 19:57 heartbeat.json
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 19:57 boinc_mmap_file
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas        28 Oct 12 19:57 wrapper_checkpoint.txt
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas        95 Oct 12 19:57 pilot_heartbeat.json
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas      4821 Oct 12 19:58 pilotlog.txt
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas   1536855 Oct 12 19:58 log.46676269._084676.job.log.1
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas       357 Oct 12 19:58 output.list
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas       620 Oct 12 19:58 runtime_log
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas   1966080 Oct 12 19:58 result.tar.gz
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas       662 Oct 12 19:58 qsDMDmQwES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaskNDmeygLHm.diag
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 19:58 runtime_log.err
[2025-10-12 19:58:08] -rw-r--r-- 1 boincer umatlas     20844 Oct 12 19:58 stderr.txt
[2025-10-12 19:58:08] HITS file was successfully produced:
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas 195012551 Oct 12 19:56 shared/HITS.pool.root.1
[2025-10-12 19:58:08]  *** Contents of shared directory: ***
[2025-10-12 19:58:08] total 409268
[2025-10-12 19:58:08] -rw-r--r-- 2 boincer umatlas 221512634 Oct 12 16:54 ATLAS.root_0
[2025-10-12 19:58:08] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 16:54 start_atlas.sh
[2025-10-12 19:58:08] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 16:54 input.tar.gz
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas 195012551 Oct 12 19:56 HITS.pool.root.1
[2025-10-12 19:58:08] -rw------- 1 boincer umatlas   1966080 Oct 12 19:58 result.tar.gz
19:58:10 (28688): run_atlas exited; CPU time 82129.852607
19:58:10 (28688): called boinc_finish(0)

</stderr_txt>
]]>

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