Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
00:52:26 (10045): wrapper (7.7.26015): starting
00:52:26 (10045): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 00:52:26] Arguments: --nthreads 8
[2025-10-13 00:52:26] Threads: 8
[2025-10-13 00:52:26] Checking for CVMFS
[2025-10-13 00:52:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:52:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:52:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:52:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:52:26] 2.11.0.0 3956 1139 65724 151640 2 188 1910171 4096001 3668 130560 0 1637753 99.596 711422 1626 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-13 00:52:26] CVMFS is ok
[2025-10-13 00:52:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:52:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:52:26] Further information can be found at the LHC@home message board.
[2025-10-13 00:52:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:52:26] Checking for apptainer binary...
[2025-10-13 00:52:26] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-13 00:52:26] apptainer is not installed, using version from CVMFS
[2025-10-13 00:52:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:52:27] WARNING: Environment variable TMPDIR already has value [/tmp/job_10534081/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node067
[2025-10-13 00:52:27] apptainer works
[2025-10-13 00:52:27] Set ATHENA_PROC_NUMBER=8
[2025-10-13 00:52:27] Set ATHENA_CORE_NUMBER=8
[2025-10-13 00:52:27] Starting ATLAS job with PandaID=6840225847
[2025-10-13 00:52:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10534081/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:40:42]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:40:42]  protocol_id=None
[2025-10-13 01:40:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 01:40:42]  replicas=None
[2025-10-13 01:40:42]  scope=mc23_13p6TeV
[2025-10-13 01:40:42]  status=None
[2025-10-13 01:40:42]  status_code=0
[2025-10-13 01:40:42]  storage_token=
[2025-10-13 01:40:42]  surl=/tmp/job_10534081/atlas/pilot/slots/0/PanDA_Pilot-6840225847/log.46676269._082887.job.log.tgz.1
[2025-10-13 01:40:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/c5/log.46676269._082887.job.log.tgz.1
[2025-10-13 01:40:42]  workdir=None
[2025-10-13 01:40:42] ]
[2025-10-13 01:40:42] 2025-10-12 23:39:49,895 | INFO     | transferring file log.46676269._082887.job.log.tgz.1 from /tmp/job_10534081/atlas/pilot/slots/0/PanDA_Pilot-6840225847/log.46676269._082887.job.log.tgz.1 to /tmp/j
[2025-10-13 01:40:42] 2025-10-12 23:39:49,895 | INFO     | executing command: /usr/bin/env mv /tmp/job_10534081/atlas/pilot/slots/0/PanDA_Pilot-6840225847/log.46676269._082887.job.log.tgz.1 /tmp/job_10534081/atlas/pilot/sl
[2025-10-13 01:40:42] 2025-10-12 23:39:49,903 | INFO     | adding to output.list: log.46676269._082887.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/c5/log.46676269._082887.job.log.tg
[2025-10-13 01:40:42] 2025-10-12 23:39:49,903 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 01:40:42] 2025-10-12 23:39:49,903 | INFO     | summary of transferred files:
[2025-10-13 01:40:42] 2025-10-12 23:39:49,903 | INFO     |  -- lfn=log.46676269._082887.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 01:40:42] 2025-10-12 23:39:49,904 | INFO     | stage-out finished correctly
[2025-10-13 01:40:42] 2025-10-12 23:39:49,953 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 01:40:42] 2025-10-12 23:39:51,251 | INFO     | time since job start (2840s) is within the limit (172800.0s)
[2025-10-13 01:40:42] 2025-10-12 23:39:52,920 | INFO     | job 6840225847 has state=finished
[2025-10-13 01:40:42] 2025-10-12 23:39:52,920 | INFO     | preparing for final server update for job 6840225847 in state='finished'
[2025-10-13 01:40:42] 2025-10-12 23:39:52,920 | INFO     | this job has now completed (state=finished)
[2025-10-13 01:40:42] 2025-10-12 23:39:52,920 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 01:40:42] 2025-10-12 23:39:52,920 | INFO     | log transfer has been attempted: DONE
[2025-10-13 01:40:42] 2025-10-12 23:39:52,920 | INFO     | job 6840225847 has finished - writing final server update
[2025-10-13 01:40:42] 2025-10-12 23:39:52,920 | INFO     | total number of processed events: 400 (read)
[2025-10-13 01:40:42] 2025-10-12 23:39:52,921 | INFO     | executing command: lscpu
[2025-10-13 01:40:42] 2025-10-12 23:39:52,949 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 01:40:42] 2025-10-12 23:39:53,256 | INFO     | time since job start (2842s) is within the limit (172800.0s)
[2025-10-13 01:40:42] 2025-10-12 23:39:54,715 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 01:40:42] 2025-10-12 23:39:54,719 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 3114.125406249999
[2025-10-13 01:40:42] 2025-10-12 23:39:54,724 | INFO     | using path: /tmp/job_10534081/atlas/pilot/slots/0/PanDA_Pilot-6840225847/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:40:42] 2025-10-12 23:39:54,725 | INFO     | extracted standard info from prmon json
[2025-10-13 01:40:42] 2025-10-12 23:39:54,725 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:40:42] 2025-10-12 23:39:54,725 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:40:42] 2025-10-12 23:39:54,725 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:40:42] 2025-10-12 23:39:54,725 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:40:42] 2025-10-12 23:39:54,726 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:40:42] 2025-10-12 23:39:54,726 | INFO     | sum of square deviations: 19832930.0
[2025-10-13 01:40:42] 2025-10-12 23:39:54,726 | INFO     | sum of deviations: -544545200.5
[2025-10-13 01:40:42] 2025-10-12 23:39:54,726 | INFO     | mean x: 1760311063.5
[2025-10-13 01:40:42] 2025-10-12 23:39:54,726 | INFO     | mean y: 2553235.975
[2025-10-13 01:40:42] 2025-10-12 23:39:54,726 | INFO     | -- intersect: 48334743235.93848
[2025-10-13 01:40:42] 2025-10-12 23:39:54,726 | INFO     | intersect: 48334743235.93848
[2025-10-13 01:40:42] 2025-10-12 23:39:54,726 | INFO     | chi2: 0.0028896776870846147
[2025-10-13 01:40:42] 2025-10-12 23:39:54,726 | INFO     | -- intersect: 48334743235.93848
[2025-10-13 01:40:42] 2025-10-12 23:39:54,726 | INFO     | current memory leak: -27.46 B/s (using 40 data points, chi2=0.00)
[2025-10-13 01:40:42] 2025-10-12 23:39:54,726 | INFO     | could have reported an average CPU frequency of 3052 MHz (5 samples)
[2025-10-13 01:40:42] 2025-10-12 23:39:54,726 | INFO     | ..............................
[2025-10-13 01:40:42] 2025-10-12 23:39:54,727 | INFO     | . Timing measurements:
[2025-10-13 01:40:42] 2025-10-12 23:39:54,727 | INFO     | . get job = 0 s
[2025-10-13 01:40:42] 2025-10-12 23:39:54,727 | INFO     | . initial setup = 1 s
[2025-10-13 01:40:42] 2025-10-12 23:39:54,727 | INFO     | . payload setup = 2 s
[2025-10-13 01:40:42] 2025-10-12 23:39:54,727 | INFO     | . stage-in = 0 s
[2025-10-13 01:40:42] 2025-10-12 23:39:54,727 | INFO     | . payload execution = 2819 s
[2025-10-13 01:40:42] 2025-10-12 23:39:54,727 | INFO     | . stage-out = 0 s
[2025-10-13 01:40:42] 2025-10-12 23:39:54,727 | INFO     | . log creation = 0 s
[2025-10-13 01:40:42] 2025-10-12 23:39:54,727 | INFO     | ..............................
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | 
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | job summary report
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | --------------------------------------------------
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | PanDA job id: 6840225847
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | task id: 46676269
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | errors: (none)
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | pilot state: finished 
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | transexitcode: 0
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | exeerrorcode: 0
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | exeerrordiag: 
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | exitcode: 0
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | exitmsg: OK
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | cpuconsumptiontime: 20367 s
[2025-10-13 01:40:42] 2025-10-12 23:39:54,942 | INFO     | nevents: 400
[2025-10-13 01:40:42] 2025-10-12 23:39:54,943 | INFO     | neventsw: 0
[2025-10-13 01:40:42] 2025-10-12 23:39:54,943 | INFO     | pid: 23187
[2025-10-13 01:40:42] 2025-10-12 23:39:54,943 | INFO     | pgrp: 23187
[2025-10-13 01:40:42] 2025-10-12 23:39:54,943 | INFO     | corecount: 8
[2025-10-13 01:40:42] 2025-10-12 23:39:54,943 | INFO     | event service: False
[2025-10-13 01:40:42] 2025-10-12 23:39:54,943 | INFO     | sizes: {0: 2348983, 2: 2349245, 11: 2349273, 2825: 2374766, 2826: 2383850, 2831: 2384020}
[2025-10-13 01:40:42] 2025-10-12 23:39:54,943 | INFO     | --------------------------------------------------
[2025-10-13 01:40:42] 2025-10-12 23:39:54,943 | INFO     | 
[2025-10-13 01:40:42] 2025-10-12 23:39:54,943 | INFO     | executing command: ls -lF /tmp/job_10534081/atlas/pilot/slots/0
[2025-10-13 01:40:42] 2025-10-12 23:39:54,951 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | job 6840225847 has completed (purged errors)
[2025-10-13 01:40:42] 2025-10-12 23:39:54,952 | INFO     | overall cleanup function is called
[2025-10-13 01:40:42] 2025-10-12 23:39:55,466 | WARNING  | process 23187 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 01:40:42] 2025-10-12 23:39:55,548 | INFO     | using path: /tmp/job_10534081/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:40:42] 2025-10-12 23:39:55,646 | INFO     | number of running child processes to parent process 23187: 1
[2025-10-13 01:40:42] 2025-10-12 23:39:55,646 | INFO     | maximum number of monitored processes: 6
[2025-10-13 01:40:42] 2025-10-12 23:39:55,646 | INFO     | aborting job monitoring since job object (job id=6840225847) has expired
[2025-10-13 01:40:42] 2025-10-12 23:39:55,958 | INFO     | --- collectZombieJob: --- 10, [23187]
[2025-10-13 01:40:42] 2025-10-12 23:39:55,958 | INFO     | zombie collector waiting for pid 23187
[2025-10-13 01:40:42] 2025-10-12 23:39:55,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:40:42] 2025-10-12 23:39:55,959 | INFO     | collected zombie processes
[2025-10-13 01:40:42] 2025-10-12 23:39:55,959 | INFO     | will attempt to kill all subprocesses of pid=23187
[2025-10-13 01:40:42] 2025-10-12 23:39:56,054 | INFO     | process IDs to be killed: [23187] (in reverse order)
[2025-10-13 01:40:42] 2025-10-12 23:39:56,090 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:40:42] 2025-10-12 23:39:56,090 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:40:42] 2025-10-12 23:39:56,096 | INFO     | did not find any defunct processes belonging to 23187
[2025-10-13 01:40:42] 2025-10-12 23:39:56,099 | INFO     | did not find any defunct processes belonging to 23187
[2025-10-13 01:40:42] 2025-10-12 23:39:56,099 | INFO     | ready for new job
[2025-10-13 01:40:42] 2025-10-12 23:39:56,099 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:40:42] 2025-10-12 23:39:56,100 | INFO     | ***************************************
[2025-10-13 01:40:42] 2025-10-12 23:39:56,100 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 01:40:42] 2025-10-12 23:39:56,100 | INFO     | ***************************************
[2025-10-13 01:40:42] 2025-10-12 23:39:56,100 | INFO     | 
[2025-10-13 01:40:42] 2025-10-12 23:39:56,114 | INFO     | architecture information:
[2025-10-13 01:40:42] 2025-10-12 23:39:56,114 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:40:42] 2025-10-12 23:39:56,119 | INFO     | cat /etc/os-release:
[2025-10-13 01:40:42] NAME="CentOS Linux"
[2025-10-13 01:40:42] VERSION="7 (Core)"
[2025-10-13 01:40:42] ID="centos"
[2025-10-13 01:40:42] ID_LIKE="rhel fedora"
[2025-10-13 01:40:42] VERSION_ID="7"
[2025-10-13 01:40:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:40:42] ANSI_COLOR="0;31"
[2025-10-13 01:40:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:40:42] HOME_URL="https://www.centos.org/"
[2025-10-13 01:40:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:40:42] 
[2025-10-13 01:40:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:40:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:40:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:40:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:40:42] 
[2025-10-13 01:40:42] 2025-10-12 23:39:56,119 | INFO     | ***************************************
[2025-10-13 01:40:42] 2025-10-12 23:39:56,621 | INFO     | executing command: df -mP /tmp/job_10534081/atlas/pilot/slots/0
[2025-10-13 01:40:42] 2025-10-12 23:39:56,627 | INFO     | sufficient remaining disk space (228542382080 B)
[2025-10-13 01:40:42] 2025-10-12 23:39:56,627 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:40:42] 2025-10-12 23:39:56,627 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:40:42] 2025-10-12 23:39:56,627 | INFO     | update_server=False
[2025-10-13 01:40:42] 2025-10-12 23:39:56,627 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:40:42] 2025-10-12 23:39:56,627 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:40:42] 2025-10-12 23:39:56,627 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:40:42] 2025-10-12 23:39:56,627 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:40:42] 2025-10-12 23:39:56,627 | INFO     | will abort loop
[2025-10-13 01:40:42] 2025-10-12 23:39:56,845 | INFO     | all job control threads have been joined
[2025-10-13 01:40:42] 2025-10-12 23:39:56,868 | INFO     | all data control threads have been joined
[2025-10-13 01:40:42] 2025-10-12 23:39:57,632 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:57,633 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:57,633 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:57,633 | INFO     | [job] validate thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:57,774 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:57,809 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:57,850 | INFO     | [job] control thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:57,873 | INFO     | [data] control thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:57,963 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:40:42] 2025-10-12 23:39:57,995 | INFO     | all payload control threads have been joined
[2025-10-13 01:40:42] 2025-10-12 23:39:57,998 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:57,999 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:58,540 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:58,789 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:59,000 | INFO     | [payload] control thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:39:59,967 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:40:00,633 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:40:07,303 | INFO     | job.realtimelogging is not enabled
[2025-10-13 01:40:42] 2025-10-12 23:40:08,308 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:40:42] 2025-10-12 23:40:26,450 | INFO     | PID=14901 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:40:42] 2025-10-12 23:40:26,450 | INFO     | .. there are 2 such processes running
[2025-10-13 01:40:42] 2025-10-12 23:40:26,450 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:40:42] 2025-10-12 23:40:26,450 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:40:42] 2025-10-12 23:40:26,450 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:40:42] 2025-10-12 23:40:35,907 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:40:42] 2025-10-12 23:40:37,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456054163200)>']
[2025-10-13 01:40:42] 2025-10-12 23:40:37,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:40:42] 2025-10-12 23:40:37,506 | INFO     | [monitor] control thread has ended
[2025-10-13 01:40:42] 2025-10-12 23:40:42,235 | INFO     | all workflow threads have been joined
[2025-10-13 01:40:42] 2025-10-12 23:40:42,235 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:40:42] 2025-10-12 23:40:42,235 | INFO     | traces error code: 0
[2025-10-13 01:40:42] 2025-10-12 23:40:42,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:40:42] 2025-10-12 23:40:42,287 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:40:42] 2025-10-12 23:40:42,289 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:40:42] 2025-10-12 23:40:42,290 [wrapper] pilotpid: 14901
[2025-10-13 01:40:42] 2025-10-12 23:40:42,291 [wrapper] Pilot exit status: 0
[2025-10-13 01:40:42] 2025-10-12 23:40:42,295 [wrapper] pandaids: 6840225847
[2025-10-13 01:40:42] 2025-10-12 23:40:42,319 [wrapper] cleanup supervisor_pilot  3253 14902
[2025-10-13 01:40:42] 2025-10-12 23:40:42,321 [wrapper] Test setup, not cleaning
[2025-10-13 01:40:42] 2025-10-12 23:40:42,322 [wrapper] apfmon messages muted
[2025-10-13 01:40:42] 2025-10-12 23:40:42,323 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:40:42] 2025-10-12 23:40:42,324 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:40:42]  *** Error codes and diagnostics ***
[2025-10-13 01:40:42]     "exeErrorCode": 0,
[2025-10-13 01:40:42]     "exeErrorDiag": "",
[2025-10-13 01:40:42]     "pilotErrorCode": 0,
[2025-10-13 01:40:42]     "pilotErrorDiag": "",
[2025-10-13 01:40:42]  *** Listing of results directory ***
[2025-10-13 01:40:42] total 415256
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user    563267 Oct  7 09:02 pilot3.tar.gz
[2025-10-13 01:40:42] -rwx------ 1 mf493845 unix-user     36292 Oct 12 17:56 runpilot2-wrapper.sh
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user      5112 Oct 12 17:56 queuedata.json
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user       100 Oct 12 23:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:40:42] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 23:55 run_atlas
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user       105 Oct 12 23:55 job.xml
[2025-10-13 01:40:42] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 13 00:52 start_atlas.sh
[2025-10-13 01:40:42] drwxrwx--x 2 mf493845 unix-user       100 Oct 13 00:52 shared
[2025-10-13 01:40:42] -rw-r--r-- 2 mf493845 unix-user    576710 Oct 13 00:52 input.tar.gz
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user      6393 Oct 13 00:52 init_data.xml
[2025-10-13 01:40:42] -rw-r--r-- 2 mf493845 unix-user 222190501 Oct 13 00:52 EVNT.46676267._004597.pool.root.1
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user         0 Oct 13 00:52 boinc_setup_complete
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user      8192 Oct 13 00:52 boinc_mmap_file
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user         0 Oct 13 00:52 boinc_lockfile
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user      2550 Oct 13 00:52 pandaJob.out
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user    975603 Oct 13 00:52 agis_schedconf.cvmfs.json
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user   1560580 Oct 13 00:52 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:40:42] drwx------ 4 mf493845 unix-user       420 Oct 13 00:52 pilot3
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user 197620870 Oct 13 01:39 HITS.46676269._082887.pool.root.1
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user      1015 Oct 13 01:39 memory_monitor_summary.json
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user    311522 Oct 13 01:39 log.46676269._082887.job.log.tgz.1
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user      7772 Oct 13 01:39 heartbeat.json
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user        95 Oct 13 01:40 pilot_heartbeat.json
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user      4909 Oct 13 01:40 pilotlog.txt
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user    451933 Oct 13 01:40 log.46676269._082887.job.log.1
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user       357 Oct 13 01:40 output.list
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user       620 Oct 13 01:40 runtime_log
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user    778240 Oct 13 01:40 result.tar.gz
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user       641 Oct 13 01:40 ytXLDmQcDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCWkNDmDSRDom.diag
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user      9076 Oct 13 01:40 runtime_log.err
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user     22211 Oct 13 01:40 stderr.txt
[2025-10-13 01:40:42] HITS file was successfully produced:
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user 197620870 Oct 13 01:39 shared/HITS.pool.root.1
[2025-10-13 01:40:42]  *** Contents of shared directory: ***
[2025-10-13 01:40:42] total 411316
[2025-10-13 01:40:42] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 13 00:52 start_atlas.sh
[2025-10-13 01:40:42] -rw-r--r-- 2 mf493845 unix-user    576710 Oct 13 00:52 input.tar.gz
[2025-10-13 01:40:42] -rw-r--r-- 2 mf493845 unix-user 222190501 Oct 13 00:52 ATLAS.root_0
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user 197620870 Oct 13 01:39 HITS.pool.root.1
[2025-10-13 01:40:42] -rw------- 1 mf493845 unix-user    778240 Oct 13 01:40 result.tar.gz
01:40:44 (10045): run_atlas exited; CPU time 20408.214001
01:40:44 (10045): called boinc_finish(0)

</stderr_txt>
]]>

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