Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:51:04 (3862904): wrapper (7.7.26015): starting
16:51:04 (3862904): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:51:04] Arguments: --nthreads 8
[2025-10-12 16:51:04] Threads: 8
[2025-10-12 16:51:04] Checking for CVMFS
[2025-10-12 16:51:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:51:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:51:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:51:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:51:04] 2.13.2.0 7513 78084 106516 151636 3 727 40827865 40960000 30175 16776704 0 468482422 99.757 291179488 46114 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:51:04] CVMFS is ok
[2025-10-12 16:51:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:51:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:51:04] Further information can be found at the LHC@home message board.
[2025-10-12 16:51:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:51:04] Checking for apptainer binary...
[2025-10-12 16:51:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:51:04] Running /usr/bin/apptainer --version
[2025-10-12 16:51:04] apptainer version 1.4.3-1.el9
[2025-10-12 16:51:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:51:05] c-208-40.aglt2.org
[2025-10-12 16:51:05] apptainer works
[2025-10-12 16:51:05] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:51:05] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:51:05] Starting ATLAS job with PandaID=6839991166
[2025-10-12 16:51:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:54:32]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:54:32] 2025-10-12 21:53:41,319 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:54:32] 2025-10-12 21:53:41,843 | INFO     | monitor loop #268: job 0:6839991166 is in state 'finished'
[2025-10-12 17:54:32] 2025-10-12 21:53:41,843 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:54:32] 2025-10-12 21:53:42,120 | INFO     | time since job start (3742s) is within the limit (172800.0s)
[2025-10-12 17:54:32] 2025-10-12 21:53:42,946 | INFO     | job 6839991166 has state=finished
[2025-10-12 17:54:32] 2025-10-12 21:53:42,946 | INFO     | preparing for final server update for job 6839991166 in state='finished'
[2025-10-12 17:54:32] 2025-10-12 21:53:43,063 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 17:54:32] 2025-10-12 21:53:43,064 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:54:32] 2025-10-12 21:53:43,064 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:54:32] 2025-10-12 21:53:43,064 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:54:32] 2025-10-12 21:53:43,064 | INFO     | job 6839991166 has finished - writing final server update
[2025-10-12 17:54:32] 2025-10-12 21:53:43,064 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:54:32] 2025-10-12 21:53:43,082 | INFO     | executing command: lscpu
[2025-10-12 17:54:32] 2025-10-12 21:53:43,174 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:54:32] 2025-10-12 21:53:44,128 | INFO     | time since job start (3744s) is within the limit (172800.0s)
[2025-10-12 17:54:32] 2025-10-12 21:53:44,129 | INFO     | 3746s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 17:54:32] 2025-10-12 21:53:44,349 | INFO     | monitor loop #269: job 0:6839991166 is in state 'finished'
[2025-10-12 17:54:32] 2025-10-12 21:53:44,349 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:54:32] 2025-10-12 21:53:46,135 | INFO     | time since job start (3746s) is within the limit (172800.0s)
[2025-10-12 17:54:32] 2025-10-12 21:53:46,865 | INFO     | monitor loop #270: job 0:6839991166 is in state 'finished'
[2025-10-12 17:54:32] 2025-10-12 21:53:46,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:54:32] 2025-10-12 21:53:47,943 | INFO     | PID=3872802 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:54:32] 2025-10-12 21:53:47,944 | INFO     | .. there are 33 such processes running
[2025-10-12 17:54:32] 2025-10-12 21:53:48,944 | INFO     | time since job start (3748s) is within the limit (172800.0s)
[2025-10-12 17:54:32] 2025-10-12 21:53:49,372 | INFO     | monitor loop #271: job 0:6839991166 is in state 'finished'
[2025-10-12 17:54:32] 2025-10-12 21:53:49,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:54:32] 2025-10-12 21:53:50,954 | INFO     | time since job start (3750s) is within the limit (172800.0s)
[2025-10-12 17:54:32] 2025-10-12 21:53:51,877 | INFO     | monitor loop #272: job 0:6839991166 is in state 'finished'
[2025-10-12 17:54:32] 2025-10-12 21:53:51,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:54:32] 2025-10-12 21:53:52,964 | INFO     | time since job start (3752s) is within the limit (172800.0s)
[2025-10-12 17:54:32] 2025-10-12 21:53:54,381 | INFO     | monitor loop #273: job 0:6839991166 is in state 'finished'
[2025-10-12 17:54:32] 2025-10-12 21:53:54,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:54:32] 2025-10-12 21:53:54,973 | INFO     | time since job start (3754s) is within the limit (172800.0s)
[2025-10-12 17:54:32] 2025-10-12 21:53:56,890 | INFO     | monitor loop #274: job 0:6839991166 is in state 'finished'
[2025-10-12 17:54:32] 2025-10-12 21:53:56,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:54:32] 2025-10-12 21:53:56,979 | INFO     | time since job start (3756s) is within the limit (172800.0s)
[2025-10-12 17:54:32] 2025-10-12 21:53:57,421 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 17:54:32] 2025-10-12 21:53:57,426 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9892734375
[2025-10-12 17:54:32] 2025-10-12 21:53:57,437 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6839991166/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:54:32] 2025-10-12 21:53:57,437 | INFO     | extracted standard info from prmon json
[2025-10-12 17:54:32] 2025-10-12 21:53:57,438 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:54:32] 2025-10-12 21:53:57,438 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:54:32] 2025-10-12 21:53:57,438 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:54:32] 2025-10-12 21:53:57,438 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:54:32] 2025-10-12 21:53:57,439 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:54:32] 2025-10-12 21:53:57,439 | INFO     | sum of square deviations: 48810217.5
[2025-10-12 17:54:32] 2025-10-12 21:53:57,439 | INFO     | sum of deviations: 67715764.49999972
[2025-10-12 17:54:32] 2025-10-12 21:53:57,439 | INFO     | mean x: 1760304235.5
[2025-10-12 17:54:32] 2025-10-12 21:53:57,439 | INFO     | mean y: 2507103.2407407407
[2025-10-12 17:54:32] 2025-10-12 21:53:57,439 | INFO     | -- intersect: -2439611640.841275
[2025-10-12 17:54:32] 2025-10-12 21:53:57,439 | INFO     | intersect: -2439611640.841275
[2025-10-12 17:54:32] 2025-10-12 21:53:57,439 | INFO     | chi2: 0.053296035398398695
[2025-10-12 17:54:32] 2025-10-12 21:53:57,439 | INFO     | -- intersect: -2439611640.841275
[2025-10-12 17:54:32] 2025-10-12 21:53:57,439 | INFO     | current memory leak: 1.39 B/s (using 54 data points, chi2=0.05)
[2025-10-12 17:54:32] 2025-10-12 21:53:57,440 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-12 17:54:32] 2025-10-12 21:53:57,440 | INFO     | ..............................
[2025-10-12 17:54:32] 2025-10-12 21:53:57,440 | INFO     | . Timing measurements:
[2025-10-12 17:54:32] 2025-10-12 21:53:57,440 | INFO     | . get job = 0 s
[2025-10-12 17:54:32] 2025-10-12 21:53:57,440 | INFO     | . initial setup = 2 s
[2025-10-12 17:54:32] 2025-10-12 21:53:57,440 | INFO     | . payload setup = 9 s
[2025-10-12 17:54:32] 2025-10-12 21:53:57,440 | INFO     | . stage-in = 0 s
[2025-10-12 17:54:32] 2025-10-12 21:53:57,440 | INFO     | . payload execution = 3707 s
[2025-10-12 17:54:32] 2025-10-12 21:53:57,440 | INFO     | . stage-out = 1 s
[2025-10-12 17:54:32] 2025-10-12 21:53:57,440 | INFO     | . log creation = 0 s
[2025-10-12 17:54:32] 2025-10-12 21:53:57,440 | INFO     | ..............................
[2025-10-12 17:54:32] 2025-10-12 21:53:57,490 | INFO     | 
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | job summary report
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | --------------------------------------------------
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | PanDA job id: 6839991166
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | task id: 46676269
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | errors: (none)
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | pilot state: finished 
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | transexitcode: 0
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | exeerrorcode: 0
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | exeerrordiag: 
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | exitcode: 0
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | exitmsg: OK
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | cpuconsumptiontime: 23574 s
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | nevents: 400
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | neventsw: 0
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | pid: 3899246
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | pgrp: 3899246
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | corecount: 8
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | event service: False
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | sizes: {0: 2348857, 8: 2349119, 11: 2349147, 3720: 2374934, 3722: 2383988, 3739: 2384126}
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | --------------------------------------------------
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | 
[2025-10-12 17:54:32] 2025-10-12 21:53:57,491 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-12 17:54:32] 2025-10-12 21:53:57,600 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | job 6839991166 has completed (purged errors)
[2025-10-12 17:54:32] 2025-10-12 21:53:57,601 | INFO     | overall cleanup function is called
[2025-10-12 17:54:32] 2025-10-12 21:53:58,609 | INFO     | --- collectZombieJob: --- 10, [3899246]
[2025-10-12 17:54:32] 2025-10-12 21:53:58,609 | INFO     | zombie collector waiting for pid 3899246
[2025-10-12 17:54:32] 2025-10-12 21:53:58,609 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:54:32] 2025-10-12 21:53:58,609 | INFO     | collected zombie processes
[2025-10-12 17:54:32] 2025-10-12 21:53:58,609 | INFO     | will attempt to kill all subprocesses of pid=3899246
[2025-10-12 17:54:32] 2025-10-12 21:53:59,128 | INFO     | process IDs to be killed: [3899246] (in reverse order)
[2025-10-12 17:54:32] 2025-10-12 21:53:59,279 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:54:32] 2025-10-12 21:53:59,279 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:54:32] 2025-10-12 21:53:59,302 | INFO     | did not find any defunct processes belonging to 3899246
[2025-10-12 17:54:32] 2025-10-12 21:53:59,324 | INFO     | did not find any defunct processes belonging to 3899246
[2025-10-12 17:54:32] 2025-10-12 21:53:59,325 | INFO     | ready for new job
[2025-10-12 17:54:32] 2025-10-12 21:53:59,325 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:54:32] 2025-10-12 21:53:59,326 | INFO     | ***************************************
[2025-10-12 17:54:32] 2025-10-12 21:53:59,326 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:54:32] 2025-10-12 21:53:59,326 | INFO     | ***************************************
[2025-10-12 17:54:32] 2025-10-12 21:53:59,326 | INFO     | 
[2025-10-12 17:54:32] 2025-10-12 21:53:59,331 | INFO     | architecture information:
[2025-10-12 17:54:32] 2025-10-12 21:53:59,332 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:54:32] 2025-10-12 21:53:59,364 | INFO     | cat /etc/os-release:
[2025-10-12 17:54:32] NAME="CentOS Linux"
[2025-10-12 17:54:32] VERSION="7 (Core)"
[2025-10-12 17:54:32] ID="centos"
[2025-10-12 17:54:32] ID_LIKE="rhel fedora"
[2025-10-12 17:54:32] VERSION_ID="7"
[2025-10-12 17:54:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:54:32] ANSI_COLOR="0;31"
[2025-10-12 17:54:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:54:32] HOME_URL="https://www.centos.org/"
[2025-10-12 17:54:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:54:32] 
[2025-10-12 17:54:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:54:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:54:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:54:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:54:32] 
[2025-10-12 17:54:32] 2025-10-12 21:53:59,364 | INFO     | ***************************************
[2025-10-12 17:54:32] 2025-10-12 21:53:59,868 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-12 17:54:32] 2025-10-12 21:53:59,898 | INFO     | sufficient remaining disk space (170767941632 B)
[2025-10-12 17:54:32] 2025-10-12 21:53:59,899 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:54:32] 2025-10-12 21:53:59,899 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:54:32] 2025-10-12 21:53:59,899 | INFO     | update_server=False
[2025-10-12 17:54:32] 2025-10-12 21:53:59,899 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:54:32] 2025-10-12 21:53:59,899 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:54:32] 2025-10-12 21:54:00,295 | INFO     | all data control threads have been joined
[2025-10-12 17:54:32] 2025-10-12 21:54:00,356 | INFO     | all payload control threads have been joined
[2025-10-12 17:54:32] 2025-10-12 21:54:00,401 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:54:32] 2025-10-12 21:54:00,401 | INFO     | aborting loop
[2025-10-12 17:54:32] 2025-10-12 21:54:00,829 | INFO     | all job control threads have been joined
[2025-10-12 17:54:32] 2025-10-12 21:54:00,907 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:00,928 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:00,933 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:54:32] 2025-10-12 21:54:01,040 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:01,112 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:01,134 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:01,301 | INFO     | [data] control thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:01,362 | INFO     | [payload] control thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:01,382 | INFO     | [job] validate thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:01,414 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:01,523 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:01,811 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:01,835 | INFO     | [job] control thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:01,906 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:02,406 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:02,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:54:32] 2025-10-12 21:54:03,509 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:04,952 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:54:32] 2025-10-12 21:54:26,362 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:54:32] 2025-10-12 21:54:26,601 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139787167762240)>', '<ExcThread(monitor, started 139786689967872)>']
[2025-10-12 17:54:32] 2025-10-12 21:54:30,616 | INFO     | PID=3872802 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:54:32] 2025-10-12 21:54:30,616 | INFO     | .. there are 33 such processes running
[2025-10-12 17:54:32] 2025-10-12 21:54:30,617 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:54:32] 2025-10-12 21:54:30,617 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:54:32] 2025-10-12 21:54:30,617 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:54:32] 2025-10-12 21:54:30,617 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:54:32] 2025-10-12 21:54:30,617 | INFO     | [monitor] control thread has ended
[2025-10-12 17:54:32] 2025-10-12 21:54:31,629 | INFO     | all workflow threads have been joined
[2025-10-12 17:54:32] 2025-10-12 21:54:31,629 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:54:32] 2025-10-12 21:54:31,632 | INFO     | traces error code: 0
[2025-10-12 17:54:32] 2025-10-12 21:54:31,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:54:32] 2025-10-12 21:54:31,825 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:54:32] 2025-10-12 21:54:31,835 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:54:32] 2025-10-12 21:54:31,849 [wrapper] pilotpid: 3872802
[2025-10-12 17:54:32] 2025-10-12 21:54:31,857 [wrapper] Pilot exit status: 0
[2025-10-12 17:54:32] 2025-10-12 21:54:31,901 [wrapper] pandaids: 6839991166
[2025-10-12 17:54:32] 2025-10-12 21:54:32,039 [wrapper] cleanup supervisor_pilot  125022 3872803
[2025-10-12 17:54:32] 2025-10-12 21:54:32,056 [wrapper] Test setup, not cleaning
[2025-10-12 17:54:32] 2025-10-12 21:54:32,061 [wrapper] apfmon messages muted
[2025-10-12 17:54:32] 2025-10-12 21:54:32,070 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:54:32] 2025-10-12 21:54:32,074 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:54:32]  *** Error codes and diagnostics ***
[2025-10-12 17:54:32]     "exeErrorCode": 0,
[2025-10-12 17:54:32]     "exeErrorDiag": "",
[2025-10-12 17:54:32]     "pilotErrorCode": 0,
[2025-10-12 17:54:32]     "pilotErrorDiag": "",
[2025-10-12 17:54:32]  *** Listing of results directory ***
[2025-10-12 17:54:32] total 408112
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 09:05 pilot3.tar.gz
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 09:20 queuedata.json
[2025-10-12 17:54:32] -rwx------. 1 boincer umatlas     36292 Oct 12 09:20 runpilot2-wrapper.sh
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas       100 Oct 12 16:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:54:32] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 16:51 run_atlas
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas       105 Oct 12 16:51 job.xml
[2025-10-12 17:54:32] -rw-r--r--. 2 boincer umatlas 219978648 Oct 12 16:51 EVNT.46676267._003861.pool.root.1
[2025-10-12 17:54:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:51 start_atlas.sh
[2025-10-12 17:54:32] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 16:51 shared
[2025-10-12 17:54:32] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 16:51 input.tar.gz
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas         0 Oct 12 16:51 boinc_lockfile
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 16:51 pandaJob.out
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas    975536 Oct 12 16:51 agis_schedconf.cvmfs.json
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas   1560580 Oct 12 16:51 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:54:32] drwx------. 5 boincer umatlas      4096 Oct 12 16:51 pilot3
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas      7173 Oct 12 17:48 init_data.xml
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas 192275871 Oct 12 17:53 HITS.46676269._079295.pool.root.1
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas       529 Oct 12 17:53 boinc_task_state.xml
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas      1065 Oct 12 17:53 memory_monitor_summary.json
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas    315698 Oct 12 17:53 log.46676269._079295.job.log.tgz.1
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas      7823 Oct 12 17:53 heartbeat.json
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas        27 Oct 12 17:54 wrapper_checkpoint.txt
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas        95 Oct 12 17:54 pilot_heartbeat.json
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas      4825 Oct 12 17:54 pilotlog.txt
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas    556017 Oct 12 17:54 log.46676269._079295.job.log.1
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 17:54 boinc_mmap_file
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas       357 Oct 12 17:54 output.list
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas       620 Oct 12 17:54 runtime_log
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas    890880 Oct 12 17:54 result.tar.gz
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 17:54 runtime_log.err
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas       656 Oct 12 17:54 4iIKDmKBBS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrzjNDmsEXxNm.diag
[2025-10-12 17:54:32] -rw-r--r--. 1 boincer umatlas     22266 Oct 12 17:54 stderr.txt
[2025-10-12 17:54:32] HITS file was successfully produced:
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas 192275871 Oct 12 17:53 shared/HITS.pool.root.1
[2025-10-12 17:54:32]  *** Contents of shared directory: ***
[2025-10-12 17:54:32] total 404052
[2025-10-12 17:54:32] -rw-r--r--. 2 boincer umatlas 219978648 Oct 12 16:51 ATLAS.root_0
[2025-10-12 17:54:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:51 start_atlas.sh
[2025-10-12 17:54:32] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 16:51 input.tar.gz
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas 192275871 Oct 12 17:53 HITS.pool.root.1
[2025-10-12 17:54:32] -rw-------. 1 boincer umatlas    890880 Oct 12 17:54 result.tar.gz
17:54:34 (3862904): run_atlas exited; CPU time 23667.623233
17:54:34 (3862904): called boinc_finish(0)

</stderr_txt>
]]>

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