Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
21:11:26 (4108761): wrapper (7.7.26015): starting
21:11:26 (4108761): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 21:11:26] Arguments: --nthreads 12
[2025-10-12 21:11:26] Threads: 12
[2025-10-12 21:11:26] Checking for CVMFS
[2025-10-12 21:11:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:11:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:11:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:11:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:11:26] 2.11.0.0 3299214 3585 89244 151636 1 188 5435950 6144000 14724 130560 0 70354914 100.000 129857 195 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 21:11:26] CVMFS is ok
[2025-10-12 21:11:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:11:26] Checking for apptainer binary...
[2025-10-12 21:11:26] apptainer is not installed, using version from CVMFS
[2025-10-12 21:11:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:11:27] radiat0r
[2025-10-12 21:11:27] apptainer works
[2025-10-12 21:11:27] Set ATHENA_PROC_NUMBER=12
[2025-10-12 21:11:27] Set ATHENA_CORE_NUMBER=12
[2025-10-12 21:11:27] Starting ATLAS job with PandaID=6840428839
[2025-10-12 21:11:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:01:55]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:01:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 22:01:55]  replicas=None
[2025-10-12 22:01:55]  scope=mc23_13p6TeV
[2025-10-12 22:01:55]  status=None
[2025-10-12 22:01:55]  status_code=0
[2025-10-12 22:01:55]  storage_token=
[2025-10-12 22:01:55]  surl=/var/lib/boinc/slots/15/PanDA_Pilot-6840428839/log.46676269._084423.job.log.tgz.1
[2025-10-12 22:01:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/be/log.46676269._084423.job.log.tgz.1
[2025-10-12 22:01:55]  workdir=None
[2025-10-12 22:01:55] ]
[2025-10-12 22:01:55] 2025-10-12 22:01:13,931 | INFO     | transferring file log.46676269._084423.job.log.tgz.1 from /var/lib/boinc/slots/15/PanDA_Pilot-6840428839/log.46676269._084423.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-12 22:01:55] 2025-10-12 22:01:13,931 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/15/PanDA_Pilot-6840428839/log.46676269._084423.job.log.tgz.1 /var/lib/boinc/slots/15/log.46676269._084423.j
[2025-10-12 22:01:55] 2025-10-12 22:01:13,946 | INFO     | time since job start (2969s) is within the limit (172800.0s)
[2025-10-12 22:01:55] 2025-10-12 22:01:13,959 | INFO     | adding to output.list: log.46676269._084423.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/be/log.46676269._084423.job.log.tg
[2025-10-12 22:01:55] 2025-10-12 22:01:13,960 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 22:01:55] 2025-10-12 22:01:13,960 | INFO     | summary of transferred files:
[2025-10-12 22:01:55] 2025-10-12 22:01:13,960 | INFO     |  -- lfn=log.46676269._084423.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 22:01:55] 2025-10-12 22:01:13,961 | INFO     | stage-out finished correctly
[2025-10-12 22:01:55] 2025-10-12 22:01:14,057 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 22:01:55] 2025-10-12 22:01:14,267 | INFO     | job 6840428839 has state=finished
[2025-10-12 22:01:55] 2025-10-12 22:01:14,267 | INFO     | preparing for final server update for job 6840428839 in state='finished'
[2025-10-12 22:01:55] 2025-10-12 22:01:14,268 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:01:55] 2025-10-12 22:01:14,268 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:01:55] 2025-10-12 22:01:14,269 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:01:55] 2025-10-12 22:01:14,269 | INFO     | job 6840428839 has finished - writing final server update
[2025-10-12 22:01:55] 2025-10-12 22:01:14,269 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:01:55] 2025-10-12 22:01:14,271 | INFO     | executing command: lscpu
[2025-10-12 22:01:55] 2025-10-12 22:01:14,473 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:01:55] 2025-10-12 22:01:15,953 | INFO     | time since job start (2971s) is within the limit (172800.0s)
[2025-10-12 22:01:55] 2025-10-12 22:01:17,959 | INFO     | time since job start (2973s) is within the limit (172800.0s)
[2025-10-12 22:01:55] 2025-10-12 22:01:19,291 | WARNING  | process 4121605 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 22:01:55] 2025-10-12 22:01:19,292 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6840428839/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:01:55] 2025-10-12 22:01:19,966 | INFO     | time since job start (2975s) is within the limit (172800.0s)
[2025-10-12 22:01:55] 2025-10-12 22:01:20,176 | INFO     | number of running child processes to parent process 4121605: 1
[2025-10-12 22:01:55] 2025-10-12 22:01:20,177 | INFO     | maximum number of monitored processes: 6
[2025-10-12 22:01:55] 2025-10-12 22:01:21,091 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 22:01:55] 2025-10-12 22:01:21,155 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2355.8218828124986
[2025-10-12 22:01:55] 2025-10-12 22:01:21,228 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6840428839/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:01:55] 2025-10-12 22:01:21,229 | INFO     | extracted standard info from prmon json
[2025-10-12 22:01:55] 2025-10-12 22:01:21,229 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:01:55] 2025-10-12 22:01:21,229 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:01:55] 2025-10-12 22:01:21,230 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:01:55] 2025-10-12 22:01:21,230 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:01:55] 2025-10-12 22:01:21,231 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:01:55] 2025-10-12 22:01:21,231 | INFO     | sum of square deviations: 22960430.5
[2025-10-12 22:01:55] 2025-10-12 22:01:21,232 | INFO     | sum of deviations: 1207098469.5
[2025-10-12 22:01:55] 2025-10-12 22:01:21,232 | INFO     | mean x: 1760305094.5
[2025-10-12 22:01:55] 2025-10-12 22:01:21,232 | INFO     | mean y: 2648045.738095238
[2025-10-12 22:01:55] 2025-10-12 22:01:21,232 | INFO     | -- intersect: -92541853043.8213
[2025-10-12 22:01:55] 2025-10-12 22:01:21,232 | INFO     | intersect: -92541853043.8213
[2025-10-12 22:01:55] 2025-10-12 22:01:21,232 | INFO     | chi2: 0.04026411294931311
[2025-10-12 22:01:55] 2025-10-12 22:01:21,232 | INFO     | -- intersect: -92541853043.8213
[2025-10-12 22:01:55] 2025-10-12 22:01:21,233 | INFO     | current memory leak: 52.57 B/s (using 42 data points, chi2=0.04)
[2025-10-12 22:01:55] 2025-10-12 22:01:21,233 | INFO     | could have reported an average CPU frequency of 2353 MHz (5 samples)
[2025-10-12 22:01:55] 2025-10-12 22:01:21,233 | INFO     | ..............................
[2025-10-12 22:01:55] 2025-10-12 22:01:21,233 | INFO     | . Timing measurements:
[2025-10-12 22:01:55] 2025-10-12 22:01:21,233 | INFO     | . get job = 0 s
[2025-10-12 22:01:55] 2025-10-12 22:01:21,233 | INFO     | . initial setup = 4 s
[2025-10-12 22:01:55] 2025-10-12 22:01:21,233 | INFO     | . payload setup = 8 s
[2025-10-12 22:01:55] 2025-10-12 22:01:21,233 | INFO     | . stage-in = 0 s
[2025-10-12 22:01:55] 2025-10-12 22:01:21,234 | INFO     | . payload execution = 2937 s
[2025-10-12 22:01:55] 2025-10-12 22:01:21,234 | INFO     | . stage-out = 0 s
[2025-10-12 22:01:55] 2025-10-12 22:01:21,234 | INFO     | . log creation = 0 s
[2025-10-12 22:01:55] 2025-10-12 22:01:21,234 | INFO     | ..............................
[2025-10-12 22:01:55] 2025-10-12 22:01:21,338 | INFO     | 
[2025-10-12 22:01:55] 2025-10-12 22:01:21,339 | INFO     | job summary report
[2025-10-12 22:01:55] 2025-10-12 22:01:21,339 | INFO     | --------------------------------------------------
[2025-10-12 22:01:55] 2025-10-12 22:01:21,339 | INFO     | PanDA job id: 6840428839
[2025-10-12 22:01:55] 2025-10-12 22:01:21,339 | INFO     | task id: 46676269
[2025-10-12 22:01:55] 2025-10-12 22:01:21,339 | INFO     | errors: (none)
[2025-10-12 22:01:55] 2025-10-12 22:01:21,339 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:01:55] 2025-10-12 22:01:21,339 | INFO     | pilot state: finished 
[2025-10-12 22:01:55] 2025-10-12 22:01:21,339 | INFO     | transexitcode: 0
[2025-10-12 22:01:55] 2025-10-12 22:01:21,339 | INFO     | exeerrorcode: 0
[2025-10-12 22:01:55] 2025-10-12 22:01:21,339 | INFO     | exeerrordiag: 
[2025-10-12 22:01:55] 2025-10-12 22:01:21,340 | INFO     | exitcode: 0
[2025-10-12 22:01:55] 2025-10-12 22:01:21,340 | INFO     | exitmsg: OK
[2025-10-12 22:01:55] 2025-10-12 22:01:21,340 | INFO     | cpuconsumptiontime: 30354 s
[2025-10-12 22:01:55] 2025-10-12 22:01:21,340 | INFO     | nevents: 400
[2025-10-12 22:01:55] 2025-10-12 22:01:21,340 | INFO     | neventsw: 0
[2025-10-12 22:01:55] 2025-10-12 22:01:21,340 | INFO     | pid: 4121605
[2025-10-12 22:01:55] 2025-10-12 22:01:21,340 | INFO     | pgrp: 4121605
[2025-10-12 22:01:55] 2025-10-12 22:01:21,340 | INFO     | corecount: 12
[2025-10-12 22:01:55] 2025-10-12 22:01:21,340 | INFO     | event service: False
[2025-10-12 22:01:55] 2025-10-12 22:01:21,340 | INFO     | sizes: {0: 2348856, 1: 2348856, 7: 2349146, 11: 2349174, 2950: 2374564, 2951: 2383748, 2959: 2383918}
[2025-10-12 22:01:55] 2025-10-12 22:01:21,340 | INFO     | --------------------------------------------------
[2025-10-12 22:01:55] 2025-10-12 22:01:21,341 | INFO     | 
[2025-10-12 22:01:55] 2025-10-12 22:01:21,341 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-10-12 22:01:55] 2025-10-12 22:01:21,372 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,372 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,372 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,372 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,372 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,372 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,372 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,373 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,373 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,373 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,373 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,373 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,373 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,373 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,373 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,373 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,374 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,374 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:01:55] 2025-10-12 22:01:21,374 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,374 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:01:55] 2025-10-12 22:01:21,374 | INFO     | job 6840428839 has completed (purged errors)
[2025-10-12 22:01:55] 2025-10-12 22:01:21,374 | INFO     | overall cleanup function is called
[2025-10-12 22:01:55] 2025-10-12 22:01:22,382 | INFO     | --- collectZombieJob: --- 10, [4121605]
[2025-10-12 22:01:55] 2025-10-12 22:01:22,383 | INFO     | zombie collector waiting for pid 4121605
[2025-10-12 22:01:55] 2025-10-12 22:01:22,383 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:01:55] 2025-10-12 22:01:22,383 | INFO     | collected zombie processes
[2025-10-12 22:01:55] 2025-10-12 22:01:22,383 | INFO     | will attempt to kill all subprocesses of pid=4121605
[2025-10-12 22:01:55] 2025-10-12 22:01:23,238 | INFO     | process IDs to be killed: [4121605] (in reverse order)
[2025-10-12 22:01:55] 2025-10-12 22:01:23,522 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:01:55] 2025-10-12 22:01:23,522 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:01:55] 2025-10-12 22:01:23,552 | INFO     | did not find any defunct processes belonging to 4121605
[2025-10-12 22:01:55] 2025-10-12 22:01:23,579 | INFO     | did not find any defunct processes belonging to 4121605
[2025-10-12 22:01:55] 2025-10-12 22:01:23,579 | INFO     | ready for new job
[2025-10-12 22:01:55] 2025-10-12 22:01:23,579 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:01:55] 2025-10-12 22:01:23,582 | INFO     | ***************************************
[2025-10-12 22:01:55] 2025-10-12 22:01:23,582 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:01:55] 2025-10-12 22:01:23,582 | INFO     | ***************************************
[2025-10-12 22:01:55] 2025-10-12 22:01:23,582 | INFO     | 
[2025-10-12 22:01:55] 2025-10-12 22:01:23,625 | INFO     | architecture information:
[2025-10-12 22:01:55] 2025-10-12 22:01:23,626 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:01:55] 2025-10-12 22:01:23,652 | INFO     | cat /etc/os-release:
[2025-10-12 22:01:55] NAME="CentOS Linux"
[2025-10-12 22:01:55] VERSION="7 (Core)"
[2025-10-12 22:01:55] ID="centos"
[2025-10-12 22:01:55] ID_LIKE="rhel fedora"
[2025-10-12 22:01:55] VERSION_ID="7"
[2025-10-12 22:01:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:01:55] ANSI_COLOR="0;31"
[2025-10-12 22:01:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:01:55] HOME_URL="https://www.centos.org/"
[2025-10-12 22:01:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:01:55] 
[2025-10-12 22:01:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:01:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:01:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:01:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:01:55] 
[2025-10-12 22:01:55] 2025-10-12 22:01:23,653 | INFO     | ***************************************
[2025-10-12 22:01:55] 2025-10-12 22:01:24,155 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-10-12 22:01:55] 2025-10-12 22:01:24,186 | INFO     | sufficient remaining disk space (1724631744512 B)
[2025-10-12 22:01:55] 2025-10-12 22:01:24,188 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:01:55] 2025-10-12 22:01:24,189 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:01:55] 2025-10-12 22:01:24,189 | INFO     | update_server=False
[2025-10-12 22:01:55] 2025-10-12 22:01:24,189 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:01:55] 2025-10-12 22:01:24,190 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:01:55] 2025-10-12 22:01:24,190 | INFO     | aborting loop
[2025-10-12 22:01:55] 2025-10-12 22:01:24,259 | INFO     | all payload control threads have been joined
[2025-10-12 22:01:55] 2025-10-12 22:01:24,569 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:01:55] 2025-10-12 22:01:24,665 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:01:55] 2025-10-12 22:01:25,192 | INFO     | all data control threads have been joined
[2025-10-12 22:01:55] 2025-10-12 22:01:25,195 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:25,196 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:25,264 | INFO     | [payload] control thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:25,310 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:25,506 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:25,771 | INFO     | all job control threads have been joined
[2025-10-12 22:01:55] 2025-10-12 22:01:26,093 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:26,134 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:26,198 | INFO     | [data] control thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:26,310 | INFO     | [job] validate thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:26,346 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:01:55] 2025-10-12 22:01:26,534 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:26,538 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:26,574 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:26,774 | INFO     | [job] control thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:27,350 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:28,671 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:34,654 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:01:55] 2025-10-12 22:01:35,659 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:01:55] 2025-10-12 22:01:48,507 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:01:55] 2025-10-12 22:01:49,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140289859757888)>', '<ExcThread(monitor, started 140289125639936)>']
[2025-10-12 22:01:55] 2025-10-12 22:01:54,109 | INFO     | PID=4113460 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 22:01:55] 2025-10-12 22:01:54,109 | INFO     | .. there are 17 such processes running
[2025-10-12 22:01:55] 2025-10-12 22:01:54,111 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:01:55] 2025-10-12 22:01:54,111 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:01:55] 2025-10-12 22:01:54,111 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:01:55] 2025-10-12 22:01:54,111 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:01:55] 2025-10-12 22:01:54,112 | INFO     | [monitor] control thread has ended
[2025-10-12 22:01:55] 2025-10-12 22:01:54,982 | INFO     | all workflow threads have been joined
[2025-10-12 22:01:55] 2025-10-12 22:01:54,983 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:01:55] 2025-10-12 22:01:54,983 | INFO     | traces error code: 0
[2025-10-12 22:01:55] 2025-10-12 22:01:54,984 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:01:55] 2025-10-12 22:01:55,204 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:01:55] 2025-10-12 22:01:55,208 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:01:55] 2025-10-12 22:01:55,212 [wrapper] pilotpid: 4113460
[2025-10-12 22:01:55] 2025-10-12 22:01:55,216 [wrapper] Pilot exit status: 0
[2025-10-12 22:01:55] 2025-10-12 22:01:55,229 [wrapper] pandaids: 6840428839
[2025-10-12 22:01:55] 2025-10-12 22:01:55,417 [wrapper] cleanup supervisor_pilot  332827 4113461
[2025-10-12 22:01:55] 2025-10-12 22:01:55,421 [wrapper] Test setup, not cleaning
[2025-10-12 22:01:55] 2025-10-12 22:01:55,426 [wrapper] apfmon messages muted
[2025-10-12 22:01:55] 2025-10-12 22:01:55,429 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:01:55] 2025-10-12 22:01:55,433 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:01:55]  *** Error codes and diagnostics ***
[2025-10-12 22:01:55]     "exeErrorCode": 0,
[2025-10-12 22:01:55]     "exeErrorDiag": "",
[2025-10-12 22:01:55]     "pilotErrorCode": 0,
[2025-10-12 22:01:55]     "pilotErrorDiag": "",
[2025-10-12 22:01:55]  *** Listing of results directory ***
[2025-10-12 22:01:55] total 413004
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc    557409 Oct 12 16:49 pilot3.tar.gz
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc      5112 Oct 12 17:07 queuedata.json
[2025-10-12 22:01:55] -rwx------ 1 boinc boinc     36292 Oct 12 17:09 runpilot2-wrapper.sh
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:01:55] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:11 run_atlas
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:11 job.xml
[2025-10-12 22:01:55] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:11 start_atlas.sh
[2025-10-12 22:01:55] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:11 shared
[2025-10-12 22:01:55] -rw-r--r-- 2 boinc boinc    569679 Oct 12 21:11 input.tar.gz
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc      9396 Oct 12 21:11 init_data.xml
[2025-10-12 22:01:55] -rw-r--r-- 2 boinc boinc 223810838 Oct 12 21:11 EVNT.46676267._004802.pool.root.1
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:11 boinc_setup_complete
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:11 boinc_lockfile
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc      2549 Oct 12 21:11 pandaJob.out
[2025-10-12 22:01:55] -rw------- 1 boinc boinc    975536 Oct 12 21:11 agis_schedconf.cvmfs.json
[2025-10-12 22:01:55] -rw------- 1 boinc boinc   1560580 Oct 12 21:11 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:01:55] drwx------ 5 boinc boinc      4096 Oct 12 21:11 pilot3
[2025-10-12 22:01:55] -rw------- 1 boinc boinc 193609717 Oct 12 22:00 HITS.46676269._084423.pool.root.1
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc       529 Oct 12 22:00 boinc_task_state.xml
[2025-10-12 22:01:55] -rw------- 1 boinc boinc      1028 Oct 12 22:01 memory_monitor_summary.json
[2025-10-12 22:01:55] -rw------- 1 boinc boinc    349969 Oct 12 22:01 log.46676269._084423.job.log.tgz.1
[2025-10-12 22:01:55] -rw------- 1 boinc boinc      7744 Oct 12 22:01 heartbeat.json
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:01 boinc_mmap_file
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:01 wrapper_checkpoint.txt
[2025-10-12 22:01:55] -rw------- 1 boinc boinc        95 Oct 12 22:01 pilot_heartbeat.json
[2025-10-12 22:01:55] -rw------- 1 boinc boinc      4900 Oct 12 22:01 pilotlog.txt
[2025-10-12 22:01:55] -rw------- 1 boinc boinc    444669 Oct 12 22:01 log.46676269._084423.job.log.1
[2025-10-12 22:01:55] -rw------- 1 boinc boinc       357 Oct 12 22:01 output.list
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:01 runtime_log
[2025-10-12 22:01:55] -rw------- 1 boinc boinc    808960 Oct 12 22:01 result.tar.gz
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc      8672 Oct 12 22:01 runtime_log.err
[2025-10-12 22:01:55] -rw------- 1 boinc boinc       643 Oct 12 22:01 eX0NDmKkES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnmkNDmrZI0Om.diag
[2025-10-12 22:01:55] -rw-r--r-- 1 boinc boinc     21551 Oct 12 22:01 stderr.txt
[2025-10-12 22:01:55] HITS file was successfully produced:
[2025-10-12 22:01:55] -rw------- 1 boinc boinc 193609717 Oct 12 22:00 shared/HITS.pool.root.1
[2025-10-12 22:01:55]  *** Contents of shared directory: ***
[2025-10-12 22:01:55] total 409016
[2025-10-12 22:01:55] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:11 start_atlas.sh
[2025-10-12 22:01:55] -rw-r--r-- 2 boinc boinc    569679 Oct 12 21:11 input.tar.gz
[2025-10-12 22:01:55] -rw-r--r-- 2 boinc boinc 223810838 Oct 12 21:11 ATLAS.root_0
[2025-10-12 22:01:55] -rw------- 1 boinc boinc 193609717 Oct 12 22:00 HITS.pool.root.1
[2025-10-12 22:01:55] -rw------- 1 boinc boinc    808960 Oct 12 22:01 result.tar.gz
22:01:57 (4108761): run_atlas exited; CPU time 30529.611140
22:01:57 (4108761): called boinc_finish(0)

</stderr_txt>
]]>

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