Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:31:04 (3993738): wrapper (7.7.26015): starting
13:31:04 (3993738): wrapper: running run_atlas (--nthreads 6)
[2025-10-13 13:31:04] Arguments: --nthreads 6
[2025-10-13 13:31:04] Threads: 6
[2025-10-13 13:31:04] Checking for CVMFS
[2025-10-13 13:31:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 13:31:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 13:31:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 13:31:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 13:31:05] 2.12.7.0 249871 6833 95132 151649 0 188 14003923 20971520 929 130560 0 11652342 99.995 238008 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 13:31:05] CVMFS is ok
[2025-10-13 13:31:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 13:31:05] Checking for apptainer binary...
[2025-10-13 13:31:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 13:31:05] Running /usr/bin/apptainer --version
[2025-10-13 13:31:05] apptainer version 1.4.0-1.el9
[2025-10-13 13:31:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 13:31:05] testio005
[2025-10-13 13:31:05] apptainer works
[2025-10-13 13:31:05] Set ATHENA_PROC_NUMBER=6
[2025-10-13 13:31:05] Set ATHENA_CORE_NUMBER=6
[2025-10-13 13:31:05] Starting ATLAS job with PandaID=6840428482
[2025-10-13 13:31:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 15:03:30]  *** The last 200 lines of the pilot log: ***
[2025-10-13 15:03:30] 2025-10-13 06:02:02,979 | INFO     | monitor loop #414: job 0:6840428482 is in state 'finished'
[2025-10-13 15:03:30] 2025-10-13 06:02:02,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:03:30] 2025-10-13 06:02:03,512 | INFO     | time since job start (5447s) is within the limit (172800.0s)
[2025-10-13 15:03:30] 2025-10-13 06:02:05,482 | INFO     | monitor loop #415: job 0:6840428482 is in state 'finished'
[2025-10-13 15:03:30] 2025-10-13 06:02:05,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:03:30] 2025-10-13 06:02:05,517 | INFO     | time since job start (5449s) is within the limit (172800.0s)
[2025-10-13 15:03:30] 2025-10-13 06:02:07,523 | INFO     | time since job start (5451s) is within the limit (172800.0s)
[2025-10-13 15:03:30] 2025-10-13 06:02:07,523 | INFO     | 5456s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 15:03:30] 2025-10-13 06:02:07,984 | INFO     | monitor loop #416: job 0:6840428482 is in state 'finished'
[2025-10-13 15:03:30] 2025-10-13 06:02:07,985 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:03:30] 2025-10-13 06:02:09,528 | INFO     | time since job start (5453s) is within the limit (172800.0s)
[2025-10-13 15:03:30] 2025-10-13 06:02:10,488 | INFO     | monitor loop #417: job 0:6840428482 is in state 'finished'
[2025-10-13 15:03:30] 2025-10-13 06:02:10,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:03:30] 2025-10-13 06:02:11,531 | INFO     | time since job start (5455s) is within the limit (172800.0s)
[2025-10-13 15:03:30] 2025-10-13 06:02:12,990 | INFO     | monitor loop #418: job 0:6840428482 is in state 'finished'
[2025-10-13 15:03:30] 2025-10-13 06:02:12,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:03:30] 2025-10-13 06:02:13,536 | INFO     | time since job start (5457s) is within the limit (172800.0s)
[2025-10-13 15:03:30] 2025-10-13 06:02:15,493 | INFO     | monitor loop #419: job 0:6840428482 is in state 'finished'
[2025-10-13 15:03:30] 2025-10-13 06:02:15,494 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:03:30] 2025-10-13 06:02:15,541 | INFO     | time since job start (5459s) is within the limit (172800.0s)
[2025-10-13 15:03:30] 2025-10-13 06:02:17,547 | INFO     | time since job start (5461s) is within the limit (172800.0s)
[2025-10-13 15:03:30] 2025-10-13 06:02:17,996 | INFO     | monitor loop #420: job 0:6840428482 is in state 'finished'
[2025-10-13 15:03:30] 2025-10-13 06:02:17,997 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:03:30] 2025-10-13 06:02:18,644 | INFO     | PID=3997533 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 15:03:30] 2025-10-13 06:02:18,645 | INFO     | .. there are 2 such processes running
[2025-10-13 15:03:30] 2025-10-13 06:02:19,645 | INFO     | time since job start (5463s) is within the limit (172800.0s)
[2025-10-13 15:03:30] 2025-10-13 06:02:20,500 | INFO     | monitor loop #421: job 0:6840428482 is in state 'finished'
[2025-10-13 15:03:30] 2025-10-13 06:02:20,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:03:30] 2025-10-13 06:02:21,650 | INFO     | time since job start (5465s) is within the limit (172800.0s)
[2025-10-13 15:03:30] 2025-10-13 06:02:23,003 | INFO     | monitor loop #422: job 0:6840428482 is in state 'finished'
[2025-10-13 15:03:30] 2025-10-13 06:02:23,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:03:30] 2025-10-13 06:02:23,656 | INFO     | time since job start (5467s) is within the limit (172800.0s)
[2025-10-13 15:03:30] 2025-10-13 06:02:25,506 | INFO     | monitor loop #423: job 0:6840428482 is in state 'finished'
[2025-10-13 15:03:30] 2025-10-13 06:02:25,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:03:30] 2025-10-13 06:02:25,661 | INFO     | time since job start (5469s) is within the limit (172800.0s)
[2025-10-13 15:03:30] 2025-10-13 06:02:26,556 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 15:03:30] 2025-10-13 06:02:26,559 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3329.835375
[2025-10-13 15:03:30] 2025-10-13 06:02:26,561 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6840428482/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 15:03:30] 2025-10-13 06:02:26,561 | INFO     | extracted standard info from prmon json
[2025-10-13 15:03:30] 2025-10-13 06:02:26,561 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 15:03:30] 2025-10-13 06:02:26,561 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 15:03:30] 2025-10-13 06:02:26,561 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 15:03:30] 2025-10-13 06:02:26,561 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 15:03:30] 2025-10-13 06:02:26,562 | INFO     | fitting pss+swap vs Time
[2025-10-13 15:03:30] 2025-10-13 06:02:26,563 | INFO     | sum of square deviations: 170944600.5
[2025-10-13 15:03:30] 2025-10-13 06:02:26,563 | INFO     | sum of deviations: -6976249048.500001
[2025-10-13 15:03:30] 2025-10-13 06:02:26,563 | INFO     | mean x: 1760332674.5
[2025-10-13 15:03:30] 2025-10-13 06:02:26,563 | INFO     | mean y: 2531122.5975609757
[2025-10-13 15:03:30] 2025-10-13 06:02:26,563 | INFO     | -- intersect: 71841706560.74828
[2025-10-13 15:03:30] 2025-10-13 06:02:26,563 | INFO     | intersect: 71841706560.74828
[2025-10-13 15:03:30] 2025-10-13 06:02:26,563 | INFO     | chi2: 0.08876556665117989
[2025-10-13 15:03:30] 2025-10-13 06:02:26,563 | INFO     | -- intersect: 71841706560.74828
[2025-10-13 15:03:30] 2025-10-13 06:02:26,563 | INFO     | current memory leak: -40.81 B/s (using 82 data points, chi2=0.09)
[2025-10-13 15:03:30] 2025-10-13 06:02:26,564 | INFO     | could have reported an average CPU frequency of 3326 MHz (6 samples)
[2025-10-13 15:03:30] 2025-10-13 06:02:26,564 | INFO     | ..............................
[2025-10-13 15:03:30] 2025-10-13 06:02:26,564 | INFO     | . Timing measurements:
[2025-10-13 15:03:30] 2025-10-13 06:02:26,564 | INFO     | . get job = 0 s
[2025-10-13 15:03:30] 2025-10-13 06:02:26,564 | INFO     | . initial setup = 4 s
[2025-10-13 15:03:30] 2025-10-13 06:02:26,564 | INFO     | . payload setup = 4 s
[2025-10-13 15:03:30] 2025-10-13 06:02:26,564 | INFO     | . stage-in = 0 s
[2025-10-13 15:03:30] 2025-10-13 06:02:26,564 | INFO     | . payload execution = 5385 s
[2025-10-13 15:03:30] 2025-10-13 06:02:26,564 | INFO     | . stage-out = 0 s
[2025-10-13 15:03:30] 2025-10-13 06:02:26,564 | INFO     | . log creation = 0 s
[2025-10-13 15:03:30] 2025-10-13 06:02:26,564 | INFO     | ..............................
[2025-10-13 15:03:30] 2025-10-13 06:02:26,625 | INFO     | 
[2025-10-13 15:03:30] 2025-10-13 06:02:26,625 | INFO     | job summary report
[2025-10-13 15:03:30] 2025-10-13 06:02:26,625 | INFO     | --------------------------------------------------
[2025-10-13 15:03:30] 2025-10-13 06:02:26,625 | INFO     | PanDA job id: 6840428482
[2025-10-13 15:03:30] 2025-10-13 06:02:26,625 | INFO     | task id: 46676269
[2025-10-13 15:03:30] 2025-10-13 06:02:26,625 | INFO     | errors: (none)
[2025-10-13 15:03:30] 2025-10-13 06:02:26,625 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 15:03:30] 2025-10-13 06:02:26,625 | INFO     | pilot state: finished 
[2025-10-13 15:03:30] 2025-10-13 06:02:26,625 | INFO     | transexitcode: 0
[2025-10-13 15:03:30] 2025-10-13 06:02:26,625 | INFO     | exeerrorcode: 0
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | exeerrordiag: 
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | exitcode: 0
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | exitmsg: OK
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | cpuconsumptiontime: 29735 s
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | nevents: 400
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | neventsw: 0
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | pid: 4004275
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | pgrp: 4004275
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | corecount: 6
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | event service: False
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | sizes: {0: 2348806, 4: 2349068, 11: 2349096, 5393: 2375667, 5395: 2384665, 5396: 2384721, 5456: 2385043}
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | --------------------------------------------------
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | 
[2025-10-13 15:03:30] 2025-10-13 06:02:26,626 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-13 15:03:30] 2025-10-13 06:02:26,640 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,640 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,640 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,640 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,640 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,641 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,641 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,641 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,641 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,641 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,641 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,641 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,641 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,641 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,642 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,642 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,642 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 15:03:30] 2025-10-13 06:02:26,642 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,642 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 15:03:30] 2025-10-13 06:02:26,642 | INFO     | job 6840428482 has completed (purged errors)
[2025-10-13 15:03:30] 2025-10-13 06:02:26,642 | INFO     | overall cleanup function is called
[2025-10-13 15:03:30] 2025-10-13 06:02:27,650 | INFO     | --- collectZombieJob: --- 10, [4004275]
[2025-10-13 15:03:30] 2025-10-13 06:02:27,650 | INFO     | zombie collector waiting for pid 4004275
[2025-10-13 15:03:30] 2025-10-13 06:02:27,650 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 15:03:30] 2025-10-13 06:02:27,650 | INFO     | collected zombie processes
[2025-10-13 15:03:30] 2025-10-13 06:02:27,650 | INFO     | will attempt to kill all subprocesses of pid=4004275
[2025-10-13 15:03:30] 2025-10-13 06:02:27,738 | INFO     | process IDs to be killed: [4004275] (in reverse order)
[2025-10-13 15:03:30] 2025-10-13 06:02:27,780 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 15:03:30] 2025-10-13 06:02:27,780 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 15:03:30] 2025-10-13 06:02:27,783 | INFO     | did not find any defunct processes belonging to 4004275
[2025-10-13 15:03:30] 2025-10-13 06:02:27,785 | INFO     | did not find any defunct processes belonging to 4004275
[2025-10-13 15:03:30] 2025-10-13 06:02:27,785 | INFO     | ready for new job
[2025-10-13 15:03:30] 2025-10-13 06:02:27,785 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 15:03:30] 2025-10-13 06:02:27,786 | INFO     | ***************************************
[2025-10-13 15:03:30] 2025-10-13 06:02:27,787 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 15:03:30] 2025-10-13 06:02:27,787 | INFO     | ***************************************
[2025-10-13 15:03:30] 2025-10-13 06:02:27,787 | INFO     | 
[2025-10-13 15:03:30] 2025-10-13 06:02:27,787 | INFO     | architecture information:
[2025-10-13 15:03:30] 2025-10-13 06:02:27,788 | INFO     | executing command: cat /etc/os-release
[2025-10-13 15:03:30] 2025-10-13 06:02:27,799 | INFO     | cat /etc/os-release:
[2025-10-13 15:03:30] NAME="CentOS Linux"
[2025-10-13 15:03:30] VERSION="7 (Core)"
[2025-10-13 15:03:30] ID="centos"
[2025-10-13 15:03:30] ID_LIKE="rhel fedora"
[2025-10-13 15:03:30] VERSION_ID="7"
[2025-10-13 15:03:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 15:03:30] ANSI_COLOR="0;31"
[2025-10-13 15:03:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 15:03:30] HOME_URL="https://www.centos.org/"
[2025-10-13 15:03:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 15:03:30] 
[2025-10-13 15:03:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 15:03:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 15:03:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 15:03:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 15:03:30] 
[2025-10-13 15:03:30] 2025-10-13 06:02:27,799 | INFO     | ***************************************
[2025-10-13 15:03:30] 2025-10-13 06:02:28,302 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-13 15:03:30] 2025-10-13 06:02:28,313 | INFO     | sufficient remaining disk space (96635715584 B)
[2025-10-13 15:03:30] 2025-10-13 06:02:28,313 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 15:03:30] 2025-10-13 06:02:28,313 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 15:03:30] 2025-10-13 06:02:28,313 | INFO     | update_server=False
[2025-10-13 15:03:30] 2025-10-13 06:02:28,313 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 15:03:30] 2025-10-13 06:02:28,314 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:03:30] 2025-10-13 06:02:28,470 | INFO     | all job control threads have been joined
[2025-10-13 15:03:30] 2025-10-13 06:02:28,578 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 15:03:30] 2025-10-13 06:02:29,013 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:03:30] 2025-10-13 06:02:29,014 | INFO     | aborting loop
[2025-10-13 15:03:30] 2025-10-13 06:02:29,309 | INFO     | all data control threads have been joined
[2025-10-13 15:03:30] 2025-10-13 06:02:29,319 | INFO     | [job] retrieve thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:29,319 | INFO     | [job] queue monitor thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:29,345 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:29,359 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:29,471 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:29,475 | INFO     | [job] control thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:29,553 | INFO     | all payload control threads have been joined
[2025-10-13 15:03:30] 2025-10-13 06:02:30,019 | INFO     | [job] job monitor thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:30,064 | INFO     | [data] copytool_in thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:30,315 | INFO     | [data] control thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:30,530 | INFO     | [payload] validate_post thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:30,558 | INFO     | [payload] control thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:30,583 | INFO     | [data] copytool_out thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:30,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 15:03:30] 2025-10-13 06:02:30,678 | INFO     | [job] validate thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:30,719 | INFO     | [payload] failed_post thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:34,644 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:39,340 | INFO     | job.realtimelogging is not enabled
[2025-10-13 15:03:30] 2025-10-13 06:02:40,346 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 15:03:30] 2025-10-13 06:02:58,857 | INFO     | PID=3997533 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 15:03:30] 2025-10-13 06:02:58,857 | INFO     | .. there are 2 such processes running
[2025-10-13 15:03:30] 2025-10-13 06:02:58,857 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 15:03:30] 2025-10-13 06:02:58,858 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 15:03:30] 2025-10-13 06:02:58,858 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 15:03:30] 2025-10-13 06:03:23,625 | INFO     | [monitor] cgroup control has ended
[2025-10-13 15:03:30] 2025-10-13 06:03:25,678 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139998792644416)>', '<ExcThread(monitor, started 139998074496768)>']
[2025-10-13 15:03:30] 2025-10-13 06:03:25,987 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 15:03:30] 2025-10-13 06:03:25,987 | INFO     | [monitor] control thread has ended
[2025-10-13 15:03:30] 2025-10-13 06:03:30,703 | INFO     | all workflow threads have been joined
[2025-10-13 15:03:30] 2025-10-13 06:03:30,703 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 15:03:30] 2025-10-13 06:03:30,704 | INFO     | traces error code: 0
[2025-10-13 15:03:30] 2025-10-13 06:03:30,704 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 15:03:30] 2025-10-13 06:03:30,779 [wrapper] ==== pilot stdout END ====
[2025-10-13 15:03:30] 2025-10-13 06:03:30,781 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 15:03:30] 2025-10-13 06:03:30,783 [wrapper] pilotpid: 3997533
[2025-10-13 15:03:30] 2025-10-13 06:03:30,785 [wrapper] Pilot exit status: 0
[2025-10-13 15:03:30] 2025-10-13 06:03:30,793 [wrapper] pandaids: 6840428482
[2025-10-13 15:03:30] 2025-10-13 06:03:30,817 [wrapper] cleanup supervisor_pilot 4041334 3997534
[2025-10-13 15:03:30] 2025-10-13 06:03:30,819 [wrapper] Test setup, not cleaning
[2025-10-13 15:03:30] 2025-10-13 06:03:30,821 [wrapper] apfmon messages muted
[2025-10-13 15:03:30] 2025-10-13 06:03:30,823 [wrapper] ==== wrapper stdout END ====
[2025-10-13 15:03:30] 2025-10-13 06:03:30,825 [wrapper] ==== wrapper stderr END ====
[2025-10-13 15:03:30]  *** Error codes and diagnostics ***
[2025-10-13 15:03:30]     "exeErrorCode": 0,
[2025-10-13 15:03:30]     "exeErrorDiag": "",
[2025-10-13 15:03:30]     "pilotErrorCode": 0,
[2025-10-13 15:03:30]     "pilotErrorDiag": "",
[2025-10-13 15:03:30]  *** Listing of results directory ***
[2025-10-13 15:03:30] total 417912
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc    557409 Oct 13 01:49 pilot3.tar.gz
[2025-10-13 15:03:30] -rwx------. 1 boinc boinc     36292 Oct 13 01:49 runpilot2-wrapper.sh
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc      5112 Oct 13 01:49 queuedata.json
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc       100 Oct 13 13:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 15:03:30] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 13:31 run_atlas
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc       105 Oct 13 13:31 job.xml
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc      9362 Oct 13 13:31 init_data.xml
[2025-10-13 15:03:30] -rw-r--r--. 2 boinc boinc 223471163 Oct 13 13:31 EVNT.46676267._001736.pool.root.1
[2025-10-13 15:03:30] -rw-r--r--. 2 boinc boinc     15120 Oct 13 13:31 start_atlas.sh
[2025-10-13 15:03:30] drwxrwx--x. 2 boinc boinc        68 Oct 13 13:31 shared
[2025-10-13 15:03:30] -rw-r--r--. 2 boinc boinc    569684 Oct 13 13:31 input.tar.gz
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc         0 Oct 13 13:31 boinc_lockfile
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc      2549 Oct 13 13:31 pandaJob.out
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc    974365 Oct 13 13:31 agis_schedconf.cvmfs.json
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc   1560580 Oct 13 13:31 agis_ddmendpoints.agis.ALL.json
[2025-10-13 15:03:30] drwx------. 5 boinc boinc      4096 Oct 13 13:31 pilot3
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc 198368416 Oct 13 15:00 HITS.46676269._084084.pool.root.1
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc       529 Oct 13 15:01 boinc_task_state.xml
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc      1018 Oct 13 15:01 memory_monitor_summary.json
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc    308263 Oct 13 15:01 log.46676269._084084.job.log.tgz.1
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc      7749 Oct 13 15:02 heartbeat.json
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc        95 Oct 13 15:02 pilot_heartbeat.json
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc      8192 Oct 13 15:03 boinc_mmap_file
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc        27 Oct 13 15:03 wrapper_checkpoint.txt
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc      4895 Oct 13 15:03 pilotlog.txt
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc    798288 Oct 13 15:03 log.46676269._084084.job.log.1
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc       357 Oct 13 15:03 output.list
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc       620 Oct 13 15:03 runtime_log
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc   1126400 Oct 13 15:03 result.tar.gz
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc      8661 Oct 13 15:03 runtime_log.err
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc       642 Oct 13 15:03 CmiKDmJRES8n9Rq4apOajLDm4fhM0noT9bVof3QYDmWTUMDmcKCgIn.diag
[2025-10-13 15:03:30] -rw-r--r--. 1 boinc boinc     21950 Oct 13 15:03 stderr.txt
[2025-10-13 15:03:30] HITS file was successfully produced:
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc 198368416 Oct 13 15:00 shared/HITS.pool.root.1
[2025-10-13 15:03:30]  *** Contents of shared directory: ***
[2025-10-13 15:03:30] total 413632
[2025-10-13 15:03:30] -rw-r--r--. 2 boinc boinc 223471163 Oct 13 13:31 ATLAS.root_0
[2025-10-13 15:03:30] -rw-r--r--. 2 boinc boinc     15120 Oct 13 13:31 start_atlas.sh
[2025-10-13 15:03:30] -rw-r--r--. 2 boinc boinc    569684 Oct 13 13:31 input.tar.gz
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc 198368416 Oct 13 15:00 HITS.pool.root.1
[2025-10-13 15:03:30] -rw-------. 1 boinc boinc   1126400 Oct 13 15:03 result.tar.gz
15:03:32 (3993738): run_atlas exited; CPU time 29792.795365
15:03:32 (3993738): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN