Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:02:22 (1934568): wrapper (7.7.26015): starting
17:02:22 (1934568): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 17:02:22] Arguments: --nthreads 8
[2025-10-12 17:02:22] Threads: 8
[2025-10-12 17:02:22] Checking for CVMFS
[2025-10-12 17:02:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 17:02:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 17:02:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 17:02:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 17:02:23] 2.13.2.0 2038924 69082 250572 151636 3 658 22464476 32503809 46330 16776704 0 452234341 99.749 310231166 34600 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 17:02:23] CVMFS is ok
[2025-10-12 17:02:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 17:02:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 17:02:23] Further information can be found at the LHC@home message board.
[2025-10-12 17:02:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 17:02:23] Checking for apptainer binary...
[2025-10-12 17:02:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 17:02:23] Running /usr/bin/apptainer --version
[2025-10-12 17:02:24] apptainer version 1.4.3-1.el9
[2025-10-12 17:02:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 17:02:24] c8-7-1.aglt2.org
[2025-10-12 17:02:24] apptainer works
[2025-10-12 17:02:24] Set ATHENA_PROC_NUMBER=8
[2025-10-12 17:02:24] Set ATHENA_CORE_NUMBER=8
[2025-10-12 17:02:25] Starting ATLAS job with PandaID=6840430229
[2025-10-12 17:02:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:48:00]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:48:00] 2025-10-12 22:46:51,555 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 18:48:00] 2025-10-12 22:46:52,456 | INFO     | time since job start (6190s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:46:53,497 | INFO     | monitor loop #386: job 0:6840430229 is in state 'finished'
[2025-10-12 18:48:00] 2025-10-12 22:46:53,497 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:48:00] 2025-10-12 22:46:54,464 | INFO     | time since job start (6192s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:46:56,003 | INFO     | monitor loop #387: job 0:6840430229 is in state 'finished'
[2025-10-12 18:48:00] 2025-10-12 22:46:56,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:48:00] 2025-10-12 22:46:56,470 | INFO     | time since job start (6194s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:46:58,477 | INFO     | time since job start (6196s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:46:58,518 | INFO     | monitor loop #388: job 0:6840430229 is in state 'finished'
[2025-10-12 18:48:00] 2025-10-12 22:46:58,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:48:00] 2025-10-12 22:47:00,484 | INFO     | time since job start (6198s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:47:01,022 | INFO     | monitor loop #389: job 0:6840430229 is in state 'finished'
[2025-10-12 18:48:00] 2025-10-12 22:47:01,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:48:00] 2025-10-12 22:47:02,490 | INFO     | time since job start (6200s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:47:03,530 | INFO     | monitor loop #390: job 0:6840430229 is in state 'finished'
[2025-10-12 18:48:00] 2025-10-12 22:47:03,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:48:00] 2025-10-12 22:47:04,501 | INFO     | time since job start (6202s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:47:06,035 | INFO     | monitor loop #391: job 0:6840430229 is in state 'finished'
[2025-10-12 18:48:00] 2025-10-12 22:47:06,035 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:48:00] 2025-10-12 22:47:06,507 | INFO     | time since job start (6204s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:47:08,513 | INFO     | time since job start (6206s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:47:08,539 | INFO     | monitor loop #392: job 0:6840430229 is in state 'finished'
[2025-10-12 18:48:00] 2025-10-12 22:47:08,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:48:00] 2025-10-12 22:47:10,519 | INFO     | time since job start (6208s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:47:11,046 | INFO     | monitor loop #393: job 0:6840430229 is in state 'finished'
[2025-10-12 18:48:00] 2025-10-12 22:47:11,046 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:48:00] 2025-10-12 22:47:12,895 | INFO     | PID=1949557 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 18:48:00] 2025-10-12 22:47:12,897 | INFO     | .. there are 52 such processes running
[2025-10-12 18:48:00] 2025-10-12 22:47:13,550 | INFO     | monitor loop #394: job 0:6840430229 is in state 'finished'
[2025-10-12 18:48:00] 2025-10-12 22:47:13,551 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:48:00] 2025-10-12 22:47:13,898 | INFO     | time since job start (6211s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:47:15,904 | INFO     | time since job start (6213s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:47:16,060 | INFO     | monitor loop #395: job 0:6840430229 is in state 'finished'
[2025-10-12 18:48:00] 2025-10-12 22:47:16,060 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:48:00] 2025-10-12 22:47:17,911 | INFO     | time since job start (6215s) is within the limit (172800.0s)
[2025-10-12 18:48:00] 2025-10-12 22:47:18,083 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 18:48:00] 2025-10-12 22:47:18,103 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.993476562498
[2025-10-12 18:48:00] 2025-10-12 22:47:18,255 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6840430229/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:48:00] 2025-10-12 22:47:18,255 | INFO     | extracted standard info from prmon json
[2025-10-12 18:48:00] 2025-10-12 22:47:18,256 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:48:00] 2025-10-12 22:47:18,256 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:48:00] 2025-10-12 22:47:18,256 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:48:00] 2025-10-12 22:47:18,256 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:48:00] 2025-10-12 22:47:18,257 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:48:00] 2025-10-12 22:47:18,257 | INFO     | sum of square deviations: 241433000.9021737
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | sum of deviations: 5342659013.184784
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | mean x: 1760306268.5326087
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | mean y: 2298454.7717391304
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | -- intersect: -38951432461.8734
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | intersect: -38951432461.8734
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | chi2: 0.14789015033487393
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | -- intersect: -38951432461.8734
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | current memory leak: 22.13 B/s (using 92 data points, chi2=0.15)
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | could have reported an average CPU frequency of 3799 MHz (7 samples)
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | ..............................
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | . Timing measurements:
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | . get job = 0 s
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | . initial setup = 6 s
[2025-10-12 18:48:00] 2025-10-12 22:47:18,258 | INFO     | . payload setup = 48 s
[2025-10-12 18:48:00] 2025-10-12 22:47:18,259 | INFO     | . stage-in = 0 s
[2025-10-12 18:48:00] 2025-10-12 22:47:18,259 | INFO     | . payload execution = 6050 s
[2025-10-12 18:48:00] 2025-10-12 22:47:18,259 | INFO     | . stage-out = 3 s
[2025-10-12 18:48:00] 2025-10-12 22:47:18,259 | INFO     | . log creation = 0 s
[2025-10-12 18:48:00] 2025-10-12 22:47:18,259 | INFO     | ..............................
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | 
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | job summary report
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | --------------------------------------------------
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | PanDA job id: 6840430229
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | task id: 46676269
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | errors: (none)
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | pilot state: finished 
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | transexitcode: 0
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | exeerrorcode: 0
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | exeerrordiag: 
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | exitcode: 0
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | exitmsg: OK
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | cpuconsumptiontime: 22177 s
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | nevents: 400
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | neventsw: 0
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | pid: 1996543
[2025-10-12 18:48:00] 2025-10-12 22:47:18,367 | INFO     | pgrp: 1996543
[2025-10-12 18:48:00] 2025-10-12 22:47:18,368 | INFO     | corecount: 8
[2025-10-12 18:48:00] 2025-10-12 22:47:18,368 | INFO     | event service: False
[2025-10-12 18:48:00] 2025-10-12 22:47:18,368 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 23: 2348913, 33: 2348941, 39: 2349259, 44: 2349415, 6102: 2376116, 6106: 2385114, 6108: 2385198, 6135: 2385392}
[2025-10-12 18:48:00] 2025-10-12 22:47:18,368 | INFO     | --------------------------------------------------
[2025-10-12 18:48:00] 2025-10-12 22:47:18,368 | INFO     | 
[2025-10-12 18:48:00] 2025-10-12 22:47:18,368 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 18:48:00] 2025-10-12 22:47:18,483 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,483 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,483 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,483 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,483 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,483 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,483 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,483 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,483 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,483 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,484 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,484 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,484 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,484 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,484 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,484 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,484 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,484 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:48:00] 2025-10-12 22:47:18,484 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,484 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:48:00] 2025-10-12 22:47:18,484 | INFO     | job 6840430229 has completed (purged errors)
[2025-10-12 18:48:00] 2025-10-12 22:47:18,484 | INFO     | overall cleanup function is called
[2025-10-12 18:48:00] 2025-10-12 22:47:19,492 | INFO     | --- collectZombieJob: --- 10, [1996543]
[2025-10-12 18:48:00] 2025-10-12 22:47:19,492 | INFO     | zombie collector waiting for pid 1996543
[2025-10-12 18:48:00] 2025-10-12 22:47:19,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:48:00] 2025-10-12 22:47:19,492 | INFO     | collected zombie processes
[2025-10-12 18:48:00] 2025-10-12 22:47:19,492 | INFO     | will attempt to kill all subprocesses of pid=1996543
[2025-10-12 18:48:00] 2025-10-12 22:47:20,668 | INFO     | process IDs to be killed: [1996543] (in reverse order)
[2025-10-12 18:48:00] 2025-10-12 22:47:21,243 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:48:00] 2025-10-12 22:47:21,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:48:00] 2025-10-12 22:47:21,277 | INFO     | did not find any defunct processes belonging to 1996543
[2025-10-12 18:48:00] 2025-10-12 22:47:21,386 | INFO     | did not find any defunct processes belonging to 1996543
[2025-10-12 18:48:00] 2025-10-12 22:47:21,386 | INFO     | ready for new job
[2025-10-12 18:48:00] 2025-10-12 22:47:21,386 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:48:00] 2025-10-12 22:47:21,387 | INFO     | ***************************************
[2025-10-12 18:48:00] 2025-10-12 22:47:21,387 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:48:00] 2025-10-12 22:47:21,388 | INFO     | ***************************************
[2025-10-12 18:48:00] 2025-10-12 22:47:21,388 | INFO     | 
[2025-10-12 18:48:00] 2025-10-12 22:47:21,435 | INFO     | architecture information:
[2025-10-12 18:48:00] 2025-10-12 22:47:21,436 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:48:00] 2025-10-12 22:47:21,518 | INFO     | cat /etc/os-release:
[2025-10-12 18:48:00] NAME="CentOS Linux"
[2025-10-12 18:48:00] VERSION="7 (Core)"
[2025-10-12 18:48:00] ID="centos"
[2025-10-12 18:48:00] ID_LIKE="rhel fedora"
[2025-10-12 18:48:00] VERSION_ID="7"
[2025-10-12 18:48:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:48:00] ANSI_COLOR="0;31"
[2025-10-12 18:48:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:48:00] HOME_URL="https://www.centos.org/"
[2025-10-12 18:48:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:48:00] 
[2025-10-12 18:48:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:48:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:48:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:48:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:48:00] 
[2025-10-12 18:48:00] 2025-10-12 22:47:21,518 | INFO     | ***************************************
[2025-10-12 18:48:00] 2025-10-12 22:47:22,027 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 18:48:00] 2025-10-12 22:47:22,121 | INFO     | sufficient remaining disk space (93032808448 B)
[2025-10-12 18:48:00] 2025-10-12 22:47:22,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:48:00] 2025-10-12 22:47:22,121 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:48:00] 2025-10-12 22:47:22,121 | INFO     | update_server=False
[2025-10-12 18:48:00] 2025-10-12 22:47:22,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:48:00] 2025-10-12 22:47:22,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:48:00] 2025-10-12 22:47:22,122 | INFO     | aborting loop
[2025-10-12 18:48:00] 2025-10-12 22:47:22,405 | INFO     | all job control threads have been joined
[2025-10-12 18:48:00] 2025-10-12 22:47:22,510 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:48:00] 2025-10-12 22:47:22,630 | INFO     | all data control threads have been joined
[2025-10-12 18:48:00] 2025-10-12 22:47:23,127 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:23,127 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:23,201 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:23,312 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:23,359 | INFO     | [job] validate thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:23,366 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:23,386 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:48:00] 2025-10-12 22:47:23,397 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:23,411 | INFO     | [job] control thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:23,458 | INFO     | all payload control threads have been joined
[2025-10-12 18:48:00] 2025-10-12 22:47:23,636 | INFO     | [data] control thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:23,801 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:23,884 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:48:00] 2025-10-12 22:47:24,192 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:24,206 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:24,394 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:24,463 | INFO     | [payload] control thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:24,532 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:27,893 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:48:00] 2025-10-12 22:47:51,932 | INFO     | PID=1949557 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 18:48:00] 2025-10-12 22:47:51,932 | INFO     | .. there are 51 such processes running
[2025-10-12 18:48:00] 2025-10-12 22:47:51,933 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:48:00] 2025-10-12 22:47:51,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:48:00] 2025-10-12 22:47:51,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:48:00] 2025-10-12 22:47:52,492 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:48:00] 2025-10-12 22:47:54,428 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139874566928192)>', '<ExcThread(monitor, started 139874225071872)>']
[2025-10-12 18:48:00] 2025-10-12 22:47:54,951 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:48:00] 2025-10-12 22:47:54,951 | INFO     | [monitor] control thread has ended
[2025-10-12 18:48:00] 2025-10-12 22:47:59,453 | INFO     | all workflow threads have been joined
[2025-10-12 18:48:00] 2025-10-12 22:47:59,453 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:48:00] 2025-10-12 22:47:59,453 | INFO     | traces error code: 0
[2025-10-12 18:48:00] 2025-10-12 22:47:59,454 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:48:00] 2025-10-12 22:47:59,590 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:48:00] 2025-10-12 22:47:59,613 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:48:00] 2025-10-12 22:47:59,644 [wrapper] pilotpid: 1949557
[2025-10-12 18:48:00] 2025-10-12 22:47:59,667 [wrapper] Pilot exit status: 0
[2025-10-12 18:48:00] 2025-10-12 22:47:59,792 [wrapper] pandaids: 6840430229
[2025-10-12 18:48:00] 2025-10-12 22:48:00,091 [wrapper] cleanup supervisor_pilot 2952509 1949558
[2025-10-12 18:48:00] 2025-10-12 22:48:00,108 [wrapper] Test setup, not cleaning
[2025-10-12 18:48:00] 2025-10-12 22:48:00,124 [wrapper] apfmon messages muted
[2025-10-12 18:48:00] 2025-10-12 22:48:00,127 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:48:00] 2025-10-12 22:48:00,153 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:48:00]  *** Error codes and diagnostics ***
[2025-10-12 18:48:00]     "exeErrorCode": 0,
[2025-10-12 18:48:00]     "exeErrorDiag": "",
[2025-10-12 18:48:00]     "pilotErrorCode": 0,
[2025-10-12 18:48:00]     "pilotErrorDiag": "",
[2025-10-12 18:48:00]  *** Listing of results directory ***
[2025-10-12 18:48:00] total 409896
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 13:32 pilot3.tar.gz
[2025-10-12 18:48:00] -rwx------. 1 boincer umatlas     36292 Oct 12 13:46 runpilot2-wrapper.sh
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 13:46 queuedata.json
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas       100 Oct 12 17:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:48:00] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 17:02 run_atlas
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas       105 Oct 12 17:02 job.xml
[2025-10-12 18:48:00] -rw-r--r--. 2 boincer umatlas 220441743 Oct 12 17:02 EVNT.46676267._003205.pool.root.1
[2025-10-12 18:48:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 17:02 start_atlas.sh
[2025-10-12 18:48:00] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 17:02 shared
[2025-10-12 18:48:00] -rw-r--r--. 2 boincer umatlas    569674 Oct 12 17:02 input.tar.gz
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas         0 Oct 12 17:02 boinc_lockfile
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 17:02 pandaJob.out
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas    975536 Oct 12 17:03 agis_schedconf.cvmfs.json
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas   1560580 Oct 12 17:03 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:48:00] drwx------. 5 boincer umatlas      4096 Oct 12 17:03 pilot3
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas      7161 Oct 12 18:40 init_data.xml
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas 193110873 Oct 12 18:46 HITS.46676269._085185.pool.root.1
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas       530 Oct 12 18:46 boinc_task_state.xml
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas      1045 Oct 12 18:46 memory_monitor_summary.json
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas    342937 Oct 12 18:46 log.46676269._085185.job.log.tgz.1
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas      7797 Oct 12 18:47 heartbeat.json
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas        95 Oct 12 18:47 pilot_heartbeat.json
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas      4824 Oct 12 18:47 pilotlog.txt
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 18:47 boinc_mmap_file
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas    797887 Oct 12 18:48 log.46676269._085185.job.log.1
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas       357 Oct 12 18:48 output.list
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas       620 Oct 12 18:48 runtime_log
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas        27 Oct 12 18:48 wrapper_checkpoint.txt
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas   1157120 Oct 12 18:48 result.tar.gz
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas      8693 Oct 12 18:48 runtime_log.err
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas       655 Oct 12 18:48 0wFODmHKFS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmivkNDmvCAMlm.diag
[2025-10-12 18:48:00] -rw-r--r--. 1 boincer umatlas     22459 Oct 12 18:48 stderr.txt
[2025-10-12 18:48:00] HITS file was successfully produced:
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas 193110873 Oct 12 18:46 shared/HITS.pool.root.1
[2025-10-12 18:48:00]  *** Contents of shared directory: ***
[2025-10-12 18:48:00] total 405576
[2025-10-12 18:48:00] -rw-r--r--. 2 boincer umatlas 220441743 Oct 12 17:02 ATLAS.root_0
[2025-10-12 18:48:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 17:02 start_atlas.sh
[2025-10-12 18:48:00] -rw-r--r--. 2 boincer umatlas    569674 Oct 12 17:02 input.tar.gz
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas 193110873 Oct 12 18:46 HITS.pool.root.1
[2025-10-12 18:48:00] -rw-------. 1 boincer umatlas   1157120 Oct 12 18:48 result.tar.gz
18:48:02 (1934568): run_atlas exited; CPU time 22399.705599
18:48:02 (1934568): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN