Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:44:41 (29394): wrapper (7.7.26015): starting
16:44:41 (29394): wrapper: running run_atlas (--nthreads 4)
[2025-10-12 16:44:41] Arguments: --nthreads 4
[2025-10-12 16:44:41] Threads: 4
[2025-10-12 16:44:41] Checking for CVMFS
[2025-10-12 16:44:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:44:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:44:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:44:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:44:41] 2.11.2.0 2311 43140 69192 151636 3 58 10635453 20275201 1 130560 0 22938211 99.989 1397951 55726 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:44:41] CVMFS is ok
[2025-10-12 16:44:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:44:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:44:41] Further information can be found at the LHC@home message board.
[2025-10-12 16:44:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:44:41] Checking for apptainer binary...
[2025-10-12 16:44:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:44:41] Running /usr/bin/apptainer --version
[2025-10-12 16:44:41] apptainer version 1.3.2-1.el7
[2025-10-12 16:44:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:44:42] c-205-34.aglt2.org
[2025-10-12 16:44:42] apptainer works
[2025-10-12 16:44:42] Set ATHENA_PROC_NUMBER=4
[2025-10-12 16:44:42] Set ATHENA_CORE_NUMBER=4
[2025-10-12 16:44:42] Starting ATLAS job with PandaID=6840225822
[2025-10-12 16:44:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:16:06]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:16:06]  status_code=0
[2025-10-12 18:16:06]  storage_token=
[2025-10-12 18:16:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840225822/log.46676269._082862.job.log.tgz.1
[2025-10-12 18:16:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/87/ed/log.46676269._082862.job.log.tgz.1
[2025-10-12 18:16:06]  workdir=None
[2025-10-12 18:16:06] ]
[2025-10-12 18:16:06] 2025-10-12 22:14:52,056 | INFO     | transferring file log.46676269._082862.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840225822/log.46676269._082862.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 18:16:06] 2025-10-12 22:14:52,057 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840225822/log.46676269._082862.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._082862.job
[2025-10-12 18:16:06] 2025-10-12 22:14:52,068 | INFO     | adding to output.list: log.46676269._082862.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/87/ed/log.46676269._082862.job.log.tg
[2025-10-12 18:16:06] 2025-10-12 22:14:52,069 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 18:16:06] 2025-10-12 22:14:52,069 | INFO     | summary of transferred files:
[2025-10-12 18:16:06] 2025-10-12 22:14:52,069 | INFO     |  -- lfn=log.46676269._082862.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 18:16:06] 2025-10-12 22:14:52,069 | INFO     | stage-out finished correctly
[2025-10-12 18:16:06] 2025-10-12 22:14:52,468 | INFO     | monitor loop #409: job 0:6840225822 is in state 'finished'
[2025-10-12 18:16:06] 2025-10-12 22:14:52,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:16:06] 2025-10-12 22:14:52,988 | INFO     | time since job start (5401s) is within the limit (172800.0s)
[2025-10-12 18:16:06] 2025-10-12 22:14:53,830 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 18:16:06] 2025-10-12 22:14:54,971 | INFO     | monitor loop #410: job 0:6840225822 is in state 'finished'
[2025-10-12 18:16:06] 2025-10-12 22:14:54,971 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:16:06] 2025-10-12 22:14:54,993 | INFO     | time since job start (5403s) is within the limit (172800.0s)
[2025-10-12 18:16:06] 2025-10-12 22:14:55,010 | INFO     | job 6840225822 has state=finished
[2025-10-12 18:16:06] 2025-10-12 22:14:55,010 | INFO     | preparing for final server update for job 6840225822 in state='finished'
[2025-10-12 18:16:06] 2025-10-12 22:14:55,010 | INFO     | this job has now completed (state=finished)
[2025-10-12 18:16:06] 2025-10-12 22:14:55,011 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 18:16:06] 2025-10-12 22:14:55,011 | INFO     | log transfer has been attempted: DONE
[2025-10-12 18:16:06] 2025-10-12 22:14:55,011 | INFO     | job 6840225822 has finished - writing final server update
[2025-10-12 18:16:06] 2025-10-12 22:14:55,011 | INFO     | total number of processed events: 400 (read)
[2025-10-12 18:16:06] 2025-10-12 22:14:55,012 | INFO     | executing command: lscpu
[2025-10-12 18:16:06] 2025-10-12 22:14:55,036 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 18:16:06] 2025-10-12 22:14:56,998 | INFO     | time since job start (5405s) is within the limit (172800.0s)
[2025-10-12 18:16:06] 2025-10-12 22:14:57,474 | INFO     | monitor loop #411: job 0:6840225822 is in state 'finished'
[2025-10-12 18:16:06] 2025-10-12 22:14:57,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:16:06] 2025-10-12 22:14:59,003 | INFO     | time since job start (5408s) is within the limit (172800.0s)
[2025-10-12 18:16:06] 2025-10-12 22:14:59,014 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 18:16:06] 2025-10-12 22:14:59,015 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 1599.975
[2025-10-12 18:16:06] 2025-10-12 22:14:59,017 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840225822/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:16:06] 2025-10-12 22:14:59,017 | INFO     | extracted standard info from prmon json
[2025-10-12 18:16:06] 2025-10-12 22:14:59,018 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:16:06] 2025-10-12 22:14:59,018 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:16:06] 2025-10-12 22:14:59,018 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:16:06] 2025-10-12 22:14:59,018 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:16:06] 2025-10-12 22:14:59,020 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:16:06] 2025-10-12 22:14:59,020 | INFO     | sum of square deviations: 170944600.5
[2025-10-12 18:16:06] 2025-10-12 22:14:59,021 | INFO     | sum of deviations: -12127012828.999996
[2025-10-12 18:16:06] 2025-10-12 22:14:59,021 | INFO     | mean x: 1760304689.5
[2025-10-12 18:16:06] 2025-10-12 22:14:59,021 | INFO     | mean y: 2435813.512195122
[2025-10-12 18:16:06] 2025-10-12 22:14:59,021 | INFO     | -- intersect: 124880539538.79105
[2025-10-12 18:16:06] 2025-10-12 22:14:59,021 | INFO     | intersect: 124880539538.79105
[2025-10-12 18:16:06] 2025-10-12 22:14:59,021 | INFO     | chi2: 0.09056254663241226
[2025-10-12 18:16:06] 2025-10-12 22:14:59,022 | INFO     | -- intersect: 124880539538.79105
[2025-10-12 18:16:06] 2025-10-12 22:14:59,022 | INFO     | current memory leak: -70.94 B/s (using 82 data points, chi2=0.09)
[2025-10-12 18:16:06] 2025-10-12 22:14:59,022 | INFO     | could have reported an average CPU frequency of 2649 MHz (6 samples)
[2025-10-12 18:16:06] 2025-10-12 22:14:59,022 | INFO     | ..............................
[2025-10-12 18:16:06] 2025-10-12 22:14:59,022 | INFO     | . Timing measurements:
[2025-10-12 18:16:06] 2025-10-12 22:14:59,022 | INFO     | . get job = 0 s
[2025-10-12 18:16:06] 2025-10-12 22:14:59,023 | INFO     | . initial setup = 2 s
[2025-10-12 18:16:06] 2025-10-12 22:14:59,023 | INFO     | . payload setup = 3 s
[2025-10-12 18:16:06] 2025-10-12 22:14:59,023 | INFO     | . stage-in = 0 s
[2025-10-12 18:16:06] 2025-10-12 22:14:59,023 | INFO     | . payload execution = 5378 s
[2025-10-12 18:16:06] 2025-10-12 22:14:59,023 | INFO     | . stage-out = 0 s
[2025-10-12 18:16:06] 2025-10-12 22:14:59,023 | INFO     | . log creation = 0 s
[2025-10-12 18:16:06] 2025-10-12 22:14:59,023 | INFO     | ..............................
[2025-10-12 18:16:06] 2025-10-12 22:14:59,396 | INFO     | 
[2025-10-12 18:16:06] 2025-10-12 22:14:59,396 | INFO     | job summary report
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | --------------------------------------------------
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | PanDA job id: 6840225822
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | task id: 46676269
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | errors: (none)
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | pilot state: finished 
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | transexitcode: 0
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | exeerrorcode: 0
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | exeerrordiag: 
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | exitcode: 0
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | exitmsg: OK
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | cpuconsumptiontime: 20778 s
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | nevents: 400
[2025-10-12 18:16:06] 2025-10-12 22:14:59,397 | INFO     | neventsw: 0
[2025-10-12 18:16:06] 2025-10-12 22:14:59,398 | INFO     | pid: 7238
[2025-10-12 18:16:06] 2025-10-12 22:14:59,398 | INFO     | pgrp: 7238
[2025-10-12 18:16:06] 2025-10-12 22:14:59,398 | INFO     | corecount: 4
[2025-10-12 18:16:06] 2025-10-12 22:14:59,398 | INFO     | event service: False
[2025-10-12 18:16:06] 2025-10-12 22:14:59,398 | INFO     | sizes: {0: 2348686, 1: 2348885, 3: 2349147, 11: 2349175, 5385: 2375817, 5386: 2375816, 5387: 2384998, 5389: 2385054, 5394: 2385248}
[2025-10-12 18:16:06] 2025-10-12 22:14:59,398 | INFO     | --------------------------------------------------
[2025-10-12 18:16:06] 2025-10-12 22:14:59,398 | INFO     | 
[2025-10-12 18:16:06] 2025-10-12 22:14:59,398 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 18:16:06] 2025-10-12 22:14:59,416 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,417 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,417 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,417 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,417 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,417 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,417 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,417 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,417 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,417 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,417 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,418 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,418 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,418 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,418 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,418 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,418 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,418 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:16:06] 2025-10-12 22:14:59,418 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,418 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:16:06] 2025-10-12 22:14:59,419 | INFO     | job 6840225822 has completed (purged errors)
[2025-10-12 18:16:06] 2025-10-12 22:14:59,419 | INFO     | overall cleanup function is called
[2025-10-12 18:16:06] 2025-10-12 22:15:00,426 | INFO     | --- collectZombieJob: --- 10, [7238]
[2025-10-12 18:16:06] 2025-10-12 22:15:00,426 | INFO     | zombie collector waiting for pid 7238
[2025-10-12 18:16:06] 2025-10-12 22:15:00,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:16:06] 2025-10-12 22:15:00,426 | INFO     | collected zombie processes
[2025-10-12 18:16:06] 2025-10-12 22:15:00,426 | INFO     | will attempt to kill all subprocesses of pid=7238
[2025-10-12 18:16:06] 2025-10-12 22:15:00,426 | INFO     | killing group process 7237
[2025-10-12 18:16:06] 2025-10-12 22:15:00,427 | WARNING  | exception thrown when killing child group process under SIGTERM: [Errno 1] Operation not permitted
[2025-10-12 18:16:06] 2025-10-12 22:15:00,427 | WARNING  | exception thrown when killing child group process with SIGKILL: [Errno 1] Operation not permitted
[2025-10-12 18:16:06] 2025-10-12 22:15:00,457 | INFO     | process IDs to be killed: [7238] (in reverse order)
[2025-10-12 18:16:06] 2025-10-12 22:15:00,479 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:16:06] 2025-10-12 22:15:00,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:16:06] 2025-10-12 22:15:00,480 | INFO     | did not find any defunct processes belonging to 7238
[2025-10-12 18:16:06] 2025-10-12 22:15:00,481 | INFO     | did not find any defunct processes belonging to 7238
[2025-10-12 18:16:06] 2025-10-12 22:15:00,481 | INFO     | ready for new job
[2025-10-12 18:16:06] 2025-10-12 22:15:00,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:16:06] 2025-10-12 22:15:00,482 | INFO     | ***************************************
[2025-10-12 18:16:06] 2025-10-12 22:15:00,482 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:16:06] 2025-10-12 22:15:00,482 | INFO     | ***************************************
[2025-10-12 18:16:06] 2025-10-12 22:15:00,482 | INFO     | 
[2025-10-12 18:16:06] 2025-10-12 22:15:00,482 | INFO     | architecture information:
[2025-10-12 18:16:06] 2025-10-12 22:15:00,483 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:16:06] 2025-10-12 22:15:00,491 | INFO     | cat /etc/os-release:
[2025-10-12 18:16:06] NAME="CentOS Linux"
[2025-10-12 18:16:06] VERSION="7 (Core)"
[2025-10-12 18:16:06] ID="centos"
[2025-10-12 18:16:06] ID_LIKE="rhel fedora"
[2025-10-12 18:16:06] VERSION_ID="7"
[2025-10-12 18:16:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:16:06] ANSI_COLOR="0;31"
[2025-10-12 18:16:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:16:06] HOME_URL="https://www.centos.org/"
[2025-10-12 18:16:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:16:06] 
[2025-10-12 18:16:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:16:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:16:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:16:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:16:06] 
[2025-10-12 18:16:06] 2025-10-12 22:15:00,491 | INFO     | ***************************************
[2025-10-12 18:16:06] 2025-10-12 22:15:00,994 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 18:16:06] 2025-10-12 22:15:01,009 | INFO     | sufficient remaining disk space (29367468032 B)
[2025-10-12 18:16:06] 2025-10-12 22:15:01,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:16:06] 2025-10-12 22:15:01,019 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:16:06] 2025-10-12 22:15:01,019 | INFO     | update_server=False
[2025-10-12 18:16:06] 2025-10-12 22:15:01,019 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:16:06] 2025-10-12 22:15:01,020 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:16:06] 2025-10-12 22:15:01,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:16:06] 2025-10-12 22:15:01,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:16:06] 2025-10-12 22:15:01,020 | INFO     | aborting loop
[2025-10-12 18:16:06] 2025-10-12 22:15:01,725 | INFO     | all data control threads have been joined
[2025-10-12 18:16:06] 2025-10-12 22:15:01,845 | INFO     | all payload control threads have been joined
[2025-10-12 18:16:06] 2025-10-12 22:15:02,023 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:02,025 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:02,026 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:02,145 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:02,176 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:02,320 | INFO     | all job control threads have been joined
[2025-10-12 18:16:06] 2025-10-12 22:15:02,730 | INFO     | [data] control thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:02,730 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:02,850 | INFO     | [payload] control thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:03,025 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:03,187 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:03,325 | INFO     | [job] control thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:03,463 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:03,470 | INFO     | [job] validate thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:03,505 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:04,377 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:16:06] 2025-10-12 22:15:08,383 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:11,392 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:16:06] 2025-10-12 22:15:12,397 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:16:06] 2025-10-12 22:15:32,120 | INFO     | PID=578 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-10-12 18:16:06] 2025-10-12 22:15:32,121 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:16:06] 2025-10-12 22:15:32,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:16:06] 2025-10-12 22:15:32,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:16:06] 2025-10-12 22:16:00,322 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:16:06] 2025-10-12 22:16:01,679 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140365043599168)>', '<ExcThread(monitor, started 140364606326528)>']
[2025-10-12 18:16:06] 2025-10-12 22:16:02,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:16:06] 2025-10-12 22:16:02,257 | INFO     | [monitor] control thread has ended
[2025-10-12 18:16:06] 2025-10-12 22:16:06,694 | INFO     | all workflow threads have been joined
[2025-10-12 18:16:06] 2025-10-12 22:16:06,694 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:16:06] 2025-10-12 22:16:06,694 | INFO     | traces error code: 0
[2025-10-12 18:16:06] 2025-10-12 22:16:06,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:16:06] 2025-10-12 22:16:06,753 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:16:06] 2025-10-12 22:16:06,755 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:16:06] 2025-10-12 22:16:06,756 [wrapper] pilotpid: 578
[2025-10-12 18:16:06] 2025-10-12 22:16:06,758 [wrapper] Pilot exit status: 0
[2025-10-12 18:16:06] 2025-10-12 22:16:06,765 [wrapper] pandaids: 6840225822
[2025-10-12 18:16:06] 2025-10-12 22:16:06,780 [wrapper] cleanup supervisor_pilot  5604 579
[2025-10-12 18:16:06] 2025-10-12 22:16:06,782 [wrapper] Test setup, not cleaning
[2025-10-12 18:16:06] 2025-10-12 22:16:06,784 [wrapper] apfmon messages muted
[2025-10-12 18:16:06] 2025-10-12 22:16:06,786 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:16:06] 2025-10-12 22:16:06,788 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:16:06]  *** Error codes and diagnostics ***
[2025-10-12 18:16:06]     "exeErrorCode": 0,
[2025-10-12 18:16:06]     "exeErrorDiag": "",
[2025-10-12 18:16:06]     "pilotErrorCode": 0,
[2025-10-12 18:16:06]     "pilotErrorDiag": "",
[2025-10-12 18:16:06]  *** Listing of results directory ***
[2025-10-12 18:16:06] total 411928
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 11:54 queuedata.json
[2025-10-12 18:16:06] -rwx------ 1 boincer umatlas     36292 Oct 12 11:55 runpilot2-wrapper.sh
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas       100 Oct 12 16:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:16:06] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 16:44 run_atlas
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas       105 Oct 12 16:44 job.xml
[2025-10-12 18:16:06] -rw-r--r-- 2 boincer umatlas 219346563 Oct 12 16:44 EVNT.46676267._004596.pool.root.1
[2025-10-12 18:16:06] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 16:44 start_atlas.sh
[2025-10-12 18:16:06] drwxrwx--x 2 boincer umatlas      4096 Oct 12 16:44 shared
[2025-10-12 18:16:06] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 16:44 input.tar.gz
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas         0 Oct 12 16:44 boinc_lockfile
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 16:44 pandaJob.out
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas    975536 Oct 12 16:44 agis_schedconf.cvmfs.json
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas   1560580 Oct 12 16:44 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:16:06] drwx------ 5 boincer umatlas      4096 Oct 12 16:44 pilot3
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas      6238 Oct 12 18:13 init_data.xml
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas 196433178 Oct 12 18:14 HITS.46676269._082862.pool.root.1
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas        95 Oct 12 18:14 pilot_heartbeat.json
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas      1041 Oct 12 18:14 memory_monitor_summary.json
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas       529 Oct 12 18:14 boinc_task_state.xml
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas    288397 Oct 12 18:14 log.46676269._082862.job.log.tgz.1
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas      7831 Oct 12 18:14 heartbeat.json
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 18:15 boinc_mmap_file
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas        27 Oct 12 18:15 wrapper_checkpoint.txt
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas      4816 Oct 12 18:16 pilotlog.txt
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas    779973 Oct 12 18:16 log.46676269._082862.job.log.1
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas       357 Oct 12 18:16 output.list
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas       620 Oct 12 18:16 runtime_log
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas   1085440 Oct 12 18:16 result.tar.gz
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 18:16 runtime_log.err
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas       656 Oct 12 18:16 82HMDmRbDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyVkNDmogTxzm.diag
[2025-10-12 18:16:06] -rw-r--r-- 1 boincer umatlas     22104 Oct 12 18:16 stderr.txt
[2025-10-12 18:16:06] HITS file was successfully produced:
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas 196433178 Oct 12 18:14 shared/HITS.pool.root.1
[2025-10-12 18:16:06]  *** Contents of shared directory: ***
[2025-10-12 18:16:06] total 407676
[2025-10-12 18:16:06] -rw-r--r-- 2 boincer umatlas 219346563 Oct 12 16:44 ATLAS.root_0
[2025-10-12 18:16:06] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 16:44 start_atlas.sh
[2025-10-12 18:16:06] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 16:44 input.tar.gz
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas 196433178 Oct 12 18:14 HITS.pool.root.1
[2025-10-12 18:16:06] -rw------- 1 boincer umatlas   1085440 Oct 12 18:16 result.tar.gz
18:16:08 (29394): run_atlas exited; CPU time 20790.356124
18:16:08 (29394): called boinc_finish(0)

</stderr_txt>
]]>

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