Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:23:10 (3134277): wrapper (7.7.26015): starting
08:23:10 (3134277): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 08:23:10] Arguments: --nthreads 3
[2025-10-13 08:23:10] Threads: 3
[2025-10-13 08:23:10] Checking for CVMFS
[2025-10-13 08:23:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:23:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:23:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:23:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:23:11] 2.9.2.0 1532479 5212 85100 151650 2 57 30034067 36864001 0 130560 0 4200869 99.991 181313 789 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 08:23:11] CVMFS is ok
[2025-10-13 08:23:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:23:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:23:11] Further information can be found at the LHC@home message board.
[2025-10-13 08:23:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:23:11] Checking for apptainer binary...
[2025-10-13 08:23:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:23:11] Running /usr/bin/apptainer --version
[2025-10-13 08:23:11] apptainer version 1.4.1-1.1
[2025-10-13 08:23:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:23:11] magicA161
[2025-10-13 08:23:11] apptainer works
[2025-10-13 08:23:11] Set ATHENA_PROC_NUMBER=3
[2025-10-13 08:23:11] Set ATHENA_CORE_NUMBER=3
[2025-10-13 08:23:11] Starting ATLAS job with PandaID=6840711518
[2025-10-13 08:23:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:44:29]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:44:29] 2025-10-13 07:43:51,399 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:44:29] 2025-10-13 07:43:51,399 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:44:29] 2025-10-13 07:43:51,400 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:44:29] 2025-10-13 07:43:51,400 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:44:29] 2025-10-13 07:43:51,400 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:44:29] 2025-10-13 07:43:51,400 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:44:29] 2025-10-13 07:43:51,400 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:44:29] 2025-10-13 07:43:51,400 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:44:29] 2025-10-13 07:43:51,400 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:44:29] 2025-10-13 07:43:51,400 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:44:29] 2025-10-13 07:43:51,400 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:44:29] 2025-10-13 07:43:51,400 | INFO     | job 6840711518 has completed (purged errors)
[2025-10-13 09:44:29] 2025-10-13 07:43:51,400 | INFO     | overall cleanup function is called
[2025-10-13 09:44:29] 2025-10-13 07:43:52,406 | INFO     | --- collectZombieJob: --- 10, [3144428]
[2025-10-13 09:44:29] 2025-10-13 07:43:52,407 | INFO     | zombie collector waiting for pid 3144428
[2025-10-13 09:44:29] 2025-10-13 07:43:52,407 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:44:29] 2025-10-13 07:43:52,407 | INFO     | collected zombie processes
[2025-10-13 09:44:29] 2025-10-13 07:43:52,407 | INFO     | will attempt to kill all subprocesses of pid=3144428
[2025-10-13 09:44:29] 2025-10-13 07:43:52,449 | INFO     | process IDs to be killed: [3144428] (in reverse order)
[2025-10-13 09:44:29] 2025-10-13 07:43:52,475 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:44:29] 2025-10-13 07:43:52,475 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:44:29] 2025-10-13 07:43:52,476 | INFO     | did not find any defunct processes belonging to 3144428
[2025-10-13 09:44:29] 2025-10-13 07:43:52,477 | INFO     | did not find any defunct processes belonging to 3144428
[2025-10-13 09:44:29] 2025-10-13 07:43:52,477 | INFO     | ready for new job
[2025-10-13 09:44:29] 2025-10-13 07:43:52,477 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:44:29] 2025-10-13 07:43:52,478 | INFO     | ***************************************
[2025-10-13 09:44:29] 2025-10-13 07:43:52,478 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:44:29] 2025-10-13 07:43:52,478 | INFO     | ***************************************
[2025-10-13 09:44:29] 2025-10-13 07:43:52,478 | INFO     | 
[2025-10-13 09:44:29] 2025-10-13 07:43:52,478 | INFO     | architecture information:
[2025-10-13 09:44:29] 2025-10-13 07:43:52,479 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:44:29] 2025-10-13 07:43:52,487 | INFO     | cat /etc/os-release:
[2025-10-13 09:44:29] NAME="CentOS Linux"
[2025-10-13 09:44:29] VERSION="7 (Core)"
[2025-10-13 09:44:29] ID="centos"
[2025-10-13 09:44:29] ID_LIKE="rhel fedora"
[2025-10-13 09:44:29] VERSION_ID="7"
[2025-10-13 09:44:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:44:29] ANSI_COLOR="0;31"
[2025-10-13 09:44:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:44:29] HOME_URL="https://www.centos.org/"
[2025-10-13 09:44:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:44:29] 
[2025-10-13 09:44:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:44:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:44:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:44:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:44:29] 
[2025-10-13 09:44:29] 2025-10-13 07:43:52,487 | INFO     | ***************************************
[2025-10-13 09:44:29] 2025-10-13 07:43:52,989 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 09:44:29] 2025-10-13 07:43:53,002 | INFO     | sufficient remaining disk space (374635233280 B)
[2025-10-13 09:44:29] 2025-10-13 07:43:53,002 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:44:29] 2025-10-13 07:43:53,002 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:44:29] 2025-10-13 07:43:53,002 | INFO     | update_server=False
[2025-10-13 09:44:29] 2025-10-13 07:43:53,002 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:44:29] 2025-10-13 07:43:53,002 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:44:29] 2025-10-13 07:43:53,002 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:44:29] 2025-10-13 07:43:53,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:44:29] 2025-10-13 07:43:53,003 | INFO     | aborting loop
[2025-10-13 09:44:29] 2025-10-13 07:43:53,395 | INFO     | all data control threads have been joined
[2025-10-13 09:44:29] 2025-10-13 07:43:53,519 | INFO     | all payload control threads have been joined
[2025-10-13 09:44:29] 2025-10-13 07:43:54,004 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:54,005 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:54,005 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:54,292 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:44:29] 2025-10-13 07:43:54,318 | INFO     | all job control threads have been joined
[2025-10-13 09:44:29] 2025-10-13 07:43:54,401 | INFO     | [data] control thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:54,439 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:54,455 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:54,525 | INFO     | [payload] control thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:54,978 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:55,182 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:55,286 | INFO     | [job] validate thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:55,304 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:55,324 | INFO     | [job] control thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:55,387 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:56,298 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:43:57,009 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:44:03,606 | INFO     | job.realtimelogging is not enabled
[2025-10-13 09:44:29] 2025-10-13 07:44:04,611 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:44:29] 2025-10-13 07:44:22,730 | INFO     | PID=3137995 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:44:29] 2025-10-13 07:44:22,730 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:44:29] 2025-10-13 07:44:22,730 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:44:29] 2025-10-13 07:44:22,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:44:29] 2025-10-13 07:44:23,524 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:44:29] 2025-10-13 07:44:24,479 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139943029827392)>', '<ExcThread(monitor, started 139942298638080)>']
[2025-10-13 09:44:29] 2025-10-13 07:44:24,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:44:29] 2025-10-13 07:44:24,738 | INFO     | [monitor] control thread has ended
[2025-10-13 09:44:29] 2025-10-13 07:44:29,505 | INFO     | all workflow threads have been joined
[2025-10-13 09:44:29] 2025-10-13 07:44:29,505 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:44:29] 2025-10-13 07:44:29,506 | INFO     | traces error code: 0
[2025-10-13 09:44:29] 2025-10-13 07:44:29,506 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:44:29] 2025-10-13 07:44:29,556 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:44:29] 2025-10-13 07:44:29,559 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:44:29] 2025-10-13 07:44:29,562 [wrapper] pilotpid: 3137995
[2025-10-13 09:44:29] 2025-10-13 07:44:29,564 [wrapper] Pilot exit status: 0
[2025-10-13 09:44:29] 2025-10-13 07:44:29,572 [wrapper] pandaids: 6840711518
[2025-10-13 09:44:29] 2025-10-13 07:44:29,589 [wrapper] cleanup supervisor_pilot 3156306 3137996
[2025-10-13 09:44:29] 2025-10-13 07:44:29,592 [wrapper] Test setup, not cleaning
[2025-10-13 09:44:29] 2025-10-13 07:44:29,594 [wrapper] apfmon messages muted
[2025-10-13 09:44:29] 2025-10-13 07:44:29,597 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:44:29] 2025-10-13 07:44:29,599 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:44:29]  *** Error codes and diagnostics ***
[2025-10-13 09:44:29]     "exeErrorCode": 0,
[2025-10-13 09:44:29]     "exeErrorDiag": "",
[2025-10-13 09:44:29]     "pilotErrorCode": 0,
[2025-10-13 09:44:29]     "pilotErrorDiag": "",
[2025-10-13 09:44:29]  *** Listing of results directory ***
[2025-10-13 09:44:29] total 409624
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:53 pilot3.tar.gz
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc      5112 Oct 12 21:07 queuedata.json
[2025-10-13 09:44:29] -rwx------ 1 boinc boinc     36292 Oct 12 21:08 runpilot2-wrapper.sh
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:44:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:23 run_atlas
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:23 job.xml
[2025-10-13 09:44:29] -rw-r--r-- 2 boinc boinc 219081907 Oct 13 08:23 EVNT.46676267._001664.pool.root.1
[2025-10-13 09:44:29] drwxrwx--x 2 boinc boinc      4096 Oct 13 08:23 shared
[2025-10-13 09:44:29] -rw-r--r-- 2 boinc boinc    569685 Oct 13 08:23 input.tar.gz
[2025-10-13 09:44:29] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:23 start_atlas.sh
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:23 boinc_setup_complete
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc      6449 Oct 13 08:23 init_data.xml
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:23 boinc_lockfile
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc      2549 Oct 13 08:23 pandaJob.out
[2025-10-13 09:44:29] -rw------- 1 boinc boinc    973230 Oct 13 08:23 agis_schedconf.cvmfs.json
[2025-10-13 09:44:29] -rw------- 1 boinc boinc   1560580 Oct 13 08:23 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:44:29] drwx------ 5 boinc boinc      4096 Oct 13 08:23 pilot3
[2025-10-13 09:44:29] -rw------- 1 boinc boinc 194581746 Oct 13 09:43 HITS.46676269._087086.pool.root.1
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc       529 Oct 13 09:43 boinc_task_state.xml
[2025-10-13 09:44:29] -rw------- 1 boinc boinc      1018 Oct 13 09:43 memory_monitor_summary.json
[2025-10-13 09:44:29] -rw------- 1 boinc boinc        95 Oct 13 09:43 pilot_heartbeat.json
[2025-10-13 09:44:29] -rw------- 1 boinc boinc    237111 Oct 13 09:43 log.46676269._087086.job.log.tgz.1
[2025-10-13 09:44:29] -rw------- 1 boinc boinc      7753 Oct 13 09:43 heartbeat.json
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc      8192 Oct 13 09:44 boinc_mmap_file
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc        27 Oct 13 09:44 wrapper_checkpoint.txt
[2025-10-13 09:44:29] -rw------- 1 boinc boinc      4824 Oct 13 09:44 pilotlog.txt
[2025-10-13 09:44:29] -rw------- 1 boinc boinc    711662 Oct 13 09:44 log.46676269._087086.job.log.1
[2025-10-13 09:44:29] -rw------- 1 boinc boinc       357 Oct 13 09:44 output.list
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc       620 Oct 13 09:44 runtime_log
[2025-10-13 09:44:29] -rw------- 1 boinc boinc    972800 Oct 13 09:44 result.tar.gz
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc      8792 Oct 13 09:44 runtime_log.err
[2025-10-13 09:44:29] -rw------- 1 boinc boinc       661 Oct 13 09:44 gD8MDmMcGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbElNDm0VwIbm.diag
[2025-10-13 09:44:29] -rw-r--r-- 1 boinc boinc     12030 Oct 13 09:44 stderr.txt
[2025-10-13 09:44:29] HITS file was successfully produced:
[2025-10-13 09:44:29] -rw------- 1 boinc boinc 194581746 Oct 13 09:43 shared/HITS.pool.root.1
[2025-10-13 09:44:29]  *** Contents of shared directory: ***
[2025-10-13 09:44:29] total 405508
[2025-10-13 09:44:29] -rw-r--r-- 2 boinc boinc 219081907 Oct 13 08:23 ATLAS.root_0
[2025-10-13 09:44:29] -rw-r--r-- 2 boinc boinc    569685 Oct 13 08:23 input.tar.gz
[2025-10-13 09:44:29] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:23 start_atlas.sh
[2025-10-13 09:44:29] -rw------- 1 boinc boinc 194581746 Oct 13 09:43 HITS.pool.root.1
[2025-10-13 09:44:29] -rw------- 1 boinc boinc    972800 Oct 13 09:44 result.tar.gz
09:44:31 (3134277): run_atlas exited; CPU time 13801.923509
09:44:31 (3134277): called boinc_finish(0)

</stderr_txt>
]]>

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