Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:32:43 (1519): wrapper (7.7.26015): starting
09:32:43 (1519): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 09:32:43] Arguments: --nthreads 8
[2025-10-13 09:32:43] Threads: 8
[2025-10-13 09:32:43] Checking for CVMFS
[2025-10-13 09:32:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:32:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:32:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:32:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:32:46] 2.11.2.0 19945 221734 137124 151653 1 60 13685247 25165825 4632 130560 0 139644552 99.896 69654454 3353 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 09:32:46] CVMFS is ok
[2025-10-13 09:32:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:32:46] Checking for apptainer binary...
[2025-10-13 09:32:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:32:46] Running /usr/bin/apptainer --version
[2025-10-13 09:32:46] apptainer version 1.3.2-1.el7
[2025-10-13 09:32:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:32:54] cg-vwn324.simple-grid.lan
[2025-10-13 09:32:54] apptainer works
[2025-10-13 09:32:54] Set ATHENA_PROC_NUMBER=8
[2025-10-13 09:32:54] Set ATHENA_CORE_NUMBER=8
[2025-10-13 09:32:54] Starting ATLAS job with PandaID=6840182339
[2025-10-13 09:32:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:43:15]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:43:15] 2025-10-13 11:42:16,091 | INFO     | time since job start (14737s) is within the limit (172800.0s)
[2025-10-13 13:43:15] 2025-10-13 11:42:17,642 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 13:43:15] 2025-10-13 11:42:17,643 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-13 13:43:15] 2025-10-13 11:42:17,645 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6840182339/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 13:43:15] 2025-10-13 11:42:17,646 | INFO     | extracted standard info from prmon json
[2025-10-13 13:43:15] 2025-10-13 11:42:17,646 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 13:43:15] 2025-10-13 11:42:17,646 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 13:43:15] 2025-10-13 11:42:17,646 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 13:43:15] 2025-10-13 11:42:17,646 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 13:43:15] 2025-10-13 11:42:17,651 | INFO     | fitting pss+swap vs Time
[2025-10-13 13:43:15] 2025-10-13 11:42:17,652 | INFO     | sum of square deviations: 3922276332.0
[2025-10-13 13:43:15] 2025-10-13 11:42:17,654 | INFO     | sum of deviations: 31945292581.000004
[2025-10-13 13:43:15] 2025-10-13 11:42:17,659 | INFO     | mean x: 1760348557.0
[2025-10-13 13:43:15] 2025-10-13 11:42:17,660 | INFO     | mean y: 2452806.9613733906
[2025-10-13 13:43:15] 2025-10-13 11:42:17,660 | INFO     | -- intersect: -14334846490.161722
[2025-10-13 13:43:15] 2025-10-13 11:42:17,660 | INFO     | intersect: -14334846490.161722
[2025-10-13 13:43:15] 2025-10-13 11:42:17,660 | INFO     | chi2: 6.449072872486475
[2025-10-13 13:43:15] 2025-10-13 11:42:17,661 | INFO     | sum of square deviations: 3675146117.0
[2025-10-13 13:43:15] 2025-10-13 11:42:17,663 | INFO     | sum of deviations: 62708336994.5
[2025-10-13 13:43:15] 2025-10-13 11:42:17,663 | INFO     | mean x: 1760348404.5
[2025-10-13 13:43:15] 2025-10-13 11:42:17,663 | INFO     | mean y: 2471536.986842105
[2025-10-13 13:43:15] 2025-10-13 11:42:17,663 | INFO     | -- intersect: -30034027002.893223
[2025-10-13 13:43:15] 2025-10-13 11:42:17,663 | INFO     | intersect: -30034027002.893223
[2025-10-13 13:43:15] 2025-10-13 11:42:17,664 | INFO     | chi2: 4.873924238975353
[2025-10-13 13:43:15] 2025-10-13 11:42:17,664 | INFO     | current chi2=4.873924238975353 (change=24.42441982988192 %)
[2025-10-13 13:43:15] 2025-10-13 11:42:17,664 | INFO     | right removable region: 227
[2025-10-13 13:43:15] 2025-10-13 11:42:17,664 | INFO     | sum of square deviations: 3675146117.0
[2025-10-13 13:43:15] 2025-10-13 11:42:17,666 | INFO     | sum of deviations: -44204365987.5
[2025-10-13 13:43:15] 2025-10-13 11:42:17,667 | INFO     | mean x: 1760348709.5
[2025-10-13 13:43:15] 2025-10-13 11:42:17,667 | INFO     | mean y: 2499717.442982456
[2025-10-13 13:43:15] 2025-10-13 11:42:17,667 | INFO     | -- intersect: 21175834366.755188
[2025-10-13 13:43:15] 2025-10-13 11:42:17,667 | INFO     | intersect: 21175834366.755188
[2025-10-13 13:43:15] 2025-10-13 11:42:17,667 | INFO     | chi2: 2.2701596750588897
[2025-10-13 13:43:15] 2025-10-13 11:42:17,667 | INFO     | current chi2=2.2701596750588897 (change=64.7986661037121 %)
[2025-10-13 13:43:15] 2025-10-13 11:42:17,668 | INFO     | sum of square deviations: 3438620752.0
[2025-10-13 13:43:15] 2025-10-13 11:42:17,670 | INFO     | sum of deviations: -61582553416.0
[2025-10-13 13:43:15] 2025-10-13 11:42:17,670 | INFO     | mean x: 1760348862.0
[2025-10-13 13:43:15] 2025-10-13 11:42:17,670 | INFO     | mean y: 2510807.4170403588
[2025-10-13 13:43:15] 2025-10-13 11:42:17,670 | INFO     | -- intersect: 31528749274.35392
[2025-10-13 13:43:15] 2025-10-13 11:42:17,670 | INFO     | intersect: 31528749274.35392
[2025-10-13 13:43:15] 2025-10-13 11:42:17,671 | INFO     | chi2: 1.8654844197254286
[2025-10-13 13:43:15] 2025-10-13 11:42:17,671 | INFO     | current chi2=1.8654844197254286 (change=17.825849863312527 %)
[2025-10-13 13:43:15] 2025-10-13 11:42:17,671 | INFO     | left removable region: 20
[2025-10-13 13:43:15] 2025-10-13 11:42:17,671 | INFO     | sum of square deviations: 2750295288.0
[2025-10-13 13:43:15] 2025-10-13 11:42:17,673 | INFO     | sum of deviations: -16471680732.999996
[2025-10-13 13:43:15] 2025-10-13 11:42:17,673 | INFO     | mean x: 1760348984.0
[2025-10-13 13:43:15] 2025-10-13 11:42:17,673 | INFO     | mean y: 2521869.3236714974
[2025-10-13 13:43:15] 2025-10-13 11:42:17,673 | INFO     | -- intersect: 10545355785.966341
[2025-10-13 13:43:15] 2025-10-13 11:42:17,673 | INFO     | intersect: 10545355785.966341
[2025-10-13 13:43:15] 2025-10-13 11:42:17,674 | INFO     | chi2: 0.12201731185221792
[2025-10-13 13:43:15] 2025-10-13 11:42:17,674 | INFO     | -- intersect: 10545355785.966341
[2025-10-13 13:43:15] 2025-10-13 11:42:17,674 | INFO     | current memory leak: -5.99 B/s (using 207 data points, chi2=0.12)
[2025-10-13 13:43:15] 2025-10-13 11:42:17,675 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 13:43:15] 2025-10-13 11:42:17,675 | INFO     | ..............................
[2025-10-13 13:43:15] 2025-10-13 11:42:17,675 | INFO     | . Timing measurements:
[2025-10-13 13:43:15] 2025-10-13 11:42:17,675 | INFO     | . get job = 0 s
[2025-10-13 13:43:15] 2025-10-13 11:42:17,675 | INFO     | . initial setup = 9 s
[2025-10-13 13:43:15] 2025-10-13 11:42:17,675 | INFO     | . payload setup = 132 s
[2025-10-13 13:43:15] 2025-10-13 11:42:17,675 | INFO     | . stage-in = 0 s
[2025-10-13 13:43:15] 2025-10-13 11:42:17,676 | INFO     | . payload execution = 14312 s
[2025-10-13 13:43:15] 2025-10-13 11:42:17,676 | INFO     | . stage-out = 3 s
[2025-10-13 13:43:15] 2025-10-13 11:42:17,676 | INFO     | . log creation = 1 s
[2025-10-13 13:43:15] 2025-10-13 11:42:17,676 | INFO     | ..............................
[2025-10-13 13:43:15] 2025-10-13 11:42:18,048 | INFO     | 
[2025-10-13 13:43:15] 2025-10-13 11:42:18,049 | INFO     | job summary report
[2025-10-13 13:43:15] 2025-10-13 11:42:18,049 | INFO     | --------------------------------------------------
[2025-10-13 13:43:15] 2025-10-13 11:42:18,049 | INFO     | PanDA job id: 6840182339
[2025-10-13 13:43:15] 2025-10-13 11:42:18,049 | INFO     | task id: 46676269
[2025-10-13 13:43:15] 2025-10-13 11:42:18,049 | INFO     | errors: (none)
[2025-10-13 13:43:15] 2025-10-13 11:42:18,049 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 13:43:15] 2025-10-13 11:42:18,049 | INFO     | pilot state: finished 
[2025-10-13 13:43:15] 2025-10-13 11:42:18,050 | INFO     | transexitcode: 0
[2025-10-13 13:43:15] 2025-10-13 11:42:18,050 | INFO     | exeerrorcode: 0
[2025-10-13 13:43:15] 2025-10-13 11:42:18,050 | INFO     | exeerrordiag: 
[2025-10-13 13:43:15] 2025-10-13 11:42:18,050 | INFO     | exitcode: 0
[2025-10-13 13:43:15] 2025-10-13 11:42:18,050 | INFO     | exitmsg: OK
[2025-10-13 13:43:15] 2025-10-13 11:42:18,050 | INFO     | cpuconsumptiontime: 53691 s
[2025-10-13 13:43:15] 2025-10-13 11:42:18,050 | INFO     | nevents: 400
[2025-10-13 13:43:15] 2025-10-13 11:42:18,050 | INFO     | neventsw: 0
[2025-10-13 13:43:15] 2025-10-13 11:42:18,050 | INFO     | pid: 11872
[2025-10-13 13:43:15] 2025-10-13 11:42:18,050 | INFO     | pgrp: 11872
[2025-10-13 13:43:15] 2025-10-13 11:42:18,051 | INFO     | corecount: 8
[2025-10-13 13:43:15] 2025-10-13 11:42:18,051 | INFO     | event service: False
[2025-10-13 13:43:15] 2025-10-13 11:42:18,051 | INFO     | sizes: {0: 2348624, 1: 2348708, 2: 2348907, 13: 2348907, 23: 2348963, 34: 2348991, 45: 2349147, 56: 2349175, 66: 2349203, 77: 2349231, 88: 2349287, 92: 2349857, 98
[2025-10-13 13:43:15] 2025-10-13 11:42:18,051 | INFO     | --------------------------------------------------
[2025-10-13 13:43:15] 2025-10-13 11:42:18,051 | INFO     | 
[2025-10-13 13:43:15] 2025-10-13 11:42:18,051 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-10-13 13:43:15] 2025-10-13 11:42:18,099 | INFO     | time since job start (14739s) is within the limit (172800.0s)
[2025-10-13 13:43:15] 2025-10-13 11:42:18,215 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,215 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,215 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,215 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,215 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,216 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,216 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,216 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,216 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,216 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,216 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,217 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 13:43:15] 2025-10-13 11:42:18,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,217 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 13:43:15] 2025-10-13 11:42:18,217 | INFO     | job 6840182339 has completed (purged errors)
[2025-10-13 13:43:15] 2025-10-13 11:42:18,217 | INFO     | overall cleanup function is called
[2025-10-13 13:43:15] 2025-10-13 11:42:19,225 | INFO     | --- collectZombieJob: --- 10, [11872]
[2025-10-13 13:43:15] 2025-10-13 11:42:19,226 | INFO     | zombie collector waiting for pid 11872
[2025-10-13 13:43:15] 2025-10-13 11:42:19,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 13:43:15] 2025-10-13 11:42:19,226 | INFO     | collected zombie processes
[2025-10-13 13:43:15] 2025-10-13 11:42:19,226 | INFO     | will attempt to kill all subprocesses of pid=11872
[2025-10-13 13:43:15] 2025-10-13 11:42:19,343 | INFO     | process IDs to be killed: [11872] (in reverse order)
[2025-10-13 13:43:15] 2025-10-13 11:42:20,021 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:43:15] 2025-10-13 11:42:20,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:43:15] 2025-10-13 11:42:20,025 | INFO     | did not find any defunct processes belonging to 11872
[2025-10-13 13:43:15] 2025-10-13 11:42:20,028 | INFO     | did not find any defunct processes belonging to 11872
[2025-10-13 13:43:15] 2025-10-13 11:42:20,028 | INFO     | ready for new job
[2025-10-13 13:43:15] 2025-10-13 11:42:20,028 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:43:15] 2025-10-13 11:42:20,031 | INFO     | ***************************************
[2025-10-13 13:43:15] 2025-10-13 11:42:20,031 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 13:43:15] 2025-10-13 11:42:20,031 | INFO     | ***************************************
[2025-10-13 13:43:15] 2025-10-13 11:42:20,031 | INFO     | 
[2025-10-13 13:43:15] 2025-10-13 11:42:20,032 | INFO     | pilot is running in a VM
[2025-10-13 13:43:15] 2025-10-13 11:42:20,032 | INFO     | architecture information:
[2025-10-13 13:43:15] 2025-10-13 11:42:20,045 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:43:15] 2025-10-13 11:42:20,373 | INFO     | cat /etc/os-release:
[2025-10-13 13:43:15] NAME="CentOS Linux"
[2025-10-13 13:43:15] VERSION="7 (Core)"
[2025-10-13 13:43:15] ID="centos"
[2025-10-13 13:43:15] ID_LIKE="rhel fedora"
[2025-10-13 13:43:15] VERSION_ID="7"
[2025-10-13 13:43:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:43:15] ANSI_COLOR="0;31"
[2025-10-13 13:43:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:43:15] HOME_URL="https://www.centos.org/"
[2025-10-13 13:43:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:43:15] 
[2025-10-13 13:43:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:43:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:43:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:43:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:43:15] 
[2025-10-13 13:43:15] 2025-10-13 11:42:20,373 | INFO     | ***************************************
[2025-10-13 13:43:15] 2025-10-13 11:42:20,877 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-10-13 13:43:15] 2025-10-13 11:42:21,131 | INFO     | sufficient remaining disk space (495217278976 B)
[2025-10-13 13:43:15] 2025-10-13 11:42:21,131 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:43:15] 2025-10-13 11:42:21,132 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:43:15] 2025-10-13 11:42:21,132 | INFO     | update_server=False
[2025-10-13 13:43:15] 2025-10-13 11:42:21,132 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:43:15] 2025-10-13 11:42:21,534 | INFO     | all data control threads have been joined
[2025-10-13 13:43:15] 2025-10-13 11:42:22,058 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:43:15] 2025-10-13 11:42:22,058 | INFO     | aborting loop
[2025-10-13 13:43:15] 2025-10-13 11:42:22,138 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:22,361 | INFO     | all payload control threads have been joined
[2025-10-13 13:43:15] 2025-10-13 11:42:22,370 | INFO     | all job control threads have been joined
[2025-10-13 13:43:15] 2025-10-13 11:42:22,466 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:22,541 | INFO     | [data] control thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:22,561 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:43:15] 2025-10-13 11:42:22,817 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:22,861 | INFO     | [job] validate thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:22,865 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:43:15] 2025-10-13 11:42:23,063 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:23,064 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:23,215 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:23,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:43:15] 2025-10-13 11:42:23,293 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:23,368 | INFO     | [payload] control thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:23,377 | INFO     | [job] control thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:23,465 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:23,623 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:23,871 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:24,569 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:27,231 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:43:15] 2025-10-13 11:42:51,294 | INFO     | PID=5261 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 13:43:15] 2025-10-13 11:42:51,294 | INFO     | .. there are 9 such processes running
[2025-10-13 13:43:15] 2025-10-13 11:42:51,295 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:43:15] 2025-10-13 11:42:51,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:43:15] 2025-10-13 11:42:51,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:43:15] 2025-10-13 11:43:04,813 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:43:15] 2025-10-13 11:43:06,737 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139990853961536)>', '<ExcThread(monitor, started 139990398908160)>']
[2025-10-13 13:43:15] 2025-10-13 11:43:07,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:43:15] 2025-10-13 11:43:07,392 | INFO     | [monitor] control thread has ended
[2025-10-13 13:43:15] 2025-10-13 11:43:11,761 | INFO     | all workflow threads have been joined
[2025-10-13 13:43:15] 2025-10-13 11:43:11,762 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:43:15] 2025-10-13 11:43:11,762 | INFO     | traces error code: 0
[2025-10-13 13:43:15] 2025-10-13 11:43:11,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:43:15] 2025-10-13 11:43:12,061 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:43:15] 2025-10-13 11:43:12,119 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:43:15] 2025-10-13 11:43:12,198 [wrapper] pilotpid: 5261
[2025-10-13 13:43:15] 2025-10-13 11:43:12,288 [wrapper] Pilot exit status: 0
[2025-10-13 13:43:15] 2025-10-13 11:43:12,540 [wrapper] pandaids: 6840182339
[2025-10-13 13:43:15] 2025-10-13 11:43:13,413 [wrapper] cleanup supervisor_pilot  4374 5262
[2025-10-13 13:43:15] 2025-10-13 11:43:13,434 [wrapper] Test setup, not cleaning
[2025-10-13 13:43:15] 2025-10-13 11:43:13,475 [wrapper] apfmon messages muted
[2025-10-13 13:43:15] 2025-10-13 11:43:13,488 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:43:15] 2025-10-13 11:43:13,517 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:43:15]  *** Error codes and diagnostics ***
[2025-10-13 13:43:15]     "exeErrorCode": 0,
[2025-10-13 13:43:15]     "exeErrorDiag": "",
[2025-10-13 13:43:15]     "pilotErrorCode": 0,
[2025-10-13 13:43:15]     "pilotErrorDiag": "",
[2025-10-13 13:43:15]  *** Listing of results directory ***
[2025-10-13 13:43:15] total 409440
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc    557409 Oct 12 16:30 pilot3.tar.gz
[2025-10-13 13:43:15] -rwx------. 1 boinc boinc     36292 Oct 12 16:43 runpilot2-wrapper.sh
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc      5112 Oct 12 16:43 queuedata.json
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc       100 Oct 13 09:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:43:15] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 09:32 run_atlas
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc       105 Oct 13 09:32 job.xml
[2025-10-13 13:43:15] -rw-r--r--. 2 boinc boinc 218134157 Oct 13 09:32 EVNT.46676267._004533.pool.root.1
[2025-10-13 13:43:15] -rw-r--r--. 2 boinc boinc     15120 Oct 13 09:32 start_atlas.sh
[2025-10-13 13:43:15] drwxrwx--x. 2 boinc boinc        68 Oct 13 09:32 shared
[2025-10-13 13:43:15] -rw-r--r--. 2 boinc boinc    569677 Oct 13 09:32 input.tar.gz
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc      6388 Oct 13 09:32 init_data.xml
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc         0 Oct 13 09:32 boinc_lockfile
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc      2547 Oct 13 09:32 pandaJob.out
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc    972849 Oct 13 09:36 agis_schedconf.cvmfs.json
[2025-10-13 13:43:15] drwx------. 5 boinc boinc      4096 Oct 13 09:36 pilot3
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc 192409627 Oct 13 13:39 HITS.46676269._081186.pool.root.1
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc       531 Oct 13 13:39 boinc_task_state.xml
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc      1019 Oct 13 13:40 memory_monitor_summary.json
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc   1560580 Oct 13 13:40 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc    444449 Oct 13 13:40 log.46676269._081186.job.log.tgz.1
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc      7779 Oct 13 13:42 heartbeat.json
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc        95 Oct 13 13:42 pilot_heartbeat.json
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc      8192 Oct 13 13:42 boinc_mmap_file
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc        28 Oct 13 13:42 wrapper_checkpoint.txt
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc      4883 Oct 13 13:43 pilotlog.txt
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc   1971266 Oct 13 13:43 log.46676269._081186.job.log.1
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc       357 Oct 13 13:43 output.list
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc       620 Oct 13 13:43 runtime_log
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc   2437120 Oct 13 13:43 result.tar.gz
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc      8703 Oct 13 13:43 runtime_log.err
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc       656 Oct 13 13:43 kflMDmKTCS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmH9TMDmcoKcHn.diag
[2025-10-13 13:43:15] -rw-r--r--. 1 boinc boinc     20792 Oct 13 13:43 stderr.txt
[2025-10-13 13:43:15] HITS file was successfully produced:
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc 192409627 Oct 13 13:39 shared/HITS.pool.root.1
[2025-10-13 13:43:15]  *** Contents of shared directory: ***
[2025-10-13 13:43:15] total 403884
[2025-10-13 13:43:15] -rw-r--r--. 2 boinc boinc 218134157 Oct 13 09:32 ATLAS.root_0
[2025-10-13 13:43:15] -rw-r--r--. 2 boinc boinc     15120 Oct 13 09:32 start_atlas.sh
[2025-10-13 13:43:15] -rw-r--r--. 2 boinc boinc    569677 Oct 13 09:32 input.tar.gz
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc 192409627 Oct 13 13:39 HITS.pool.root.1
[2025-10-13 13:43:15] -rw-------. 1 boinc boinc   2437120 Oct 13 13:43 result.tar.gz
13:43:16 (1519): run_atlas exited; CPU time 53899.005586
13:43:16 (1519): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN