Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:34:21 (10313): wrapper (7.7.26015): starting
16:34:21 (10313): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:34:21] Arguments: --nthreads 8
[2025-10-12 16:34:21] Threads: 8
[2025-10-12 16:34:21] Checking for CVMFS
[2025-10-12 16:34:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:34:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:34:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:34:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:34:21] 2.11.2.0 3213 628305 247792 151636 2 59 11062994 20275200 93 130560 1 359981300 99.992 26080358 20179 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:34:21] CVMFS is ok
[2025-10-12 16:34:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:34:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:34:21] Further information can be found at the LHC@home message board.
[2025-10-12 16:34:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:34:21] Checking for apptainer binary...
[2025-10-12 16:34:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:34:21] Running /usr/bin/apptainer --version
[2025-10-12 16:34:21] apptainer version 1.3.2-1.el7
[2025-10-12 16:34:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:34:22] c-205-38.aglt2.org
[2025-10-12 16:34:22] apptainer works
[2025-10-12 16:34:22] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:34:22] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:34:22] Starting ATLAS job with PandaID=6840428775
[2025-10-12 16:34:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:26:44]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:26:44]  replicas=None
[2025-10-12 17:26:44]  scope=mc23_13p6TeV
[2025-10-12 17:26:44]  status=None
[2025-10-12 17:26:44]  status_code=0
[2025-10-12 17:26:44]  storage_token=
[2025-10-12 17:26:44]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6840428775/log.46676269._084359.job.log.tgz.1
[2025-10-12 17:26:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/d3/log.46676269._084359.job.log.tgz.1
[2025-10-12 17:26:44]  workdir=None
[2025-10-12 17:26:44] ]
[2025-10-12 17:26:44] 2025-10-12 21:25:41,517 | INFO     | transferring file log.46676269._084359.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6840428775/log.46676269._084359.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 17:26:44] 2025-10-12 21:25:41,518 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6840428775/log.46676269._084359.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._084359.job
[2025-10-12 17:26:44] 2025-10-12 21:25:41,536 | INFO     | adding to output.list: log.46676269._084359.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/d3/log.46676269._084359.job.log.tg
[2025-10-12 17:26:44] 2025-10-12 21:25:41,536 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:26:44] 2025-10-12 21:25:41,536 | INFO     | summary of transferred files:
[2025-10-12 17:26:44] 2025-10-12 21:25:41,536 | INFO     |  -- lfn=log.46676269._084359.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:26:44] 2025-10-12 21:25:41,537 | INFO     | stage-out finished correctly
[2025-10-12 17:26:44] 2025-10-12 21:25:43,491 | INFO     | time since job start (3070s) is within the limit (172800.0s)
[2025-10-12 17:26:44] 2025-10-12 21:25:43,884 | INFO     | monitor loop #234: job 0:6840428775 is in state 'finished'
[2025-10-12 17:26:44] 2025-10-12 21:25:43,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:26:44] 2025-10-12 21:25:44,693 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:26:44] 2025-10-12 21:25:45,496 | INFO     | time since job start (3072s) is within the limit (172800.0s)
[2025-10-12 17:26:44] 2025-10-12 21:25:46,387 | INFO     | monitor loop #235: job 0:6840428775 is in state 'finished'
[2025-10-12 17:26:44] 2025-10-12 21:25:46,388 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:26:44] 2025-10-12 21:25:46,864 | INFO     | job 6840428775 has state=finished
[2025-10-12 17:26:44] 2025-10-12 21:25:46,864 | INFO     | preparing for final server update for job 6840428775 in state='finished'
[2025-10-12 17:26:44] 2025-10-12 21:25:46,865 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:26:44] 2025-10-12 21:25:46,865 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:26:44] 2025-10-12 21:25:46,865 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:26:44] 2025-10-12 21:25:46,865 | INFO     | job 6840428775 has finished - writing final server update
[2025-10-12 17:26:44] 2025-10-12 21:25:46,866 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:26:44] 2025-10-12 21:25:46,867 | INFO     | executing command: lscpu
[2025-10-12 17:26:44] 2025-10-12 21:25:46,898 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:26:44] 2025-10-12 21:25:47,502 | INFO     | time since job start (3074s) is within the limit (172800.0s)
[2025-10-12 17:26:44] 2025-10-12 21:25:48,890 | INFO     | monitor loop #236: job 0:6840428775 is in state 'finished'
[2025-10-12 17:26:44] 2025-10-12 21:25:48,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:26:44] 2025-10-12 21:25:49,507 | INFO     | time since job start (3076s) is within the limit (172800.0s)
[2025-10-12 17:26:44] 2025-10-12 21:25:50,015 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:26:44] 2025-10-12 21:25:50,017 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2833.398
[2025-10-12 17:26:44] 2025-10-12 21:25:50,018 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6840428775/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:26:44] 2025-10-12 21:25:50,019 | INFO     | extracted standard info from prmon json
[2025-10-12 17:26:44] 2025-10-12 21:25:50,019 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:26:44] 2025-10-12 21:25:50,019 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:26:44] 2025-10-12 21:25:50,019 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:26:44] 2025-10-12 21:25:50,019 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:26:44] 2025-10-12 21:25:50,020 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:26:44] 2025-10-12 21:25:50,020 | INFO     | sum of square deviations: 24640462.0
[2025-10-12 17:26:44] 2025-10-12 21:25:50,020 | INFO     | sum of deviations: -687330432.0
[2025-10-12 17:26:44] 2025-10-12 21:25:50,020 | INFO     | mean x: 1760302884.0
[2025-10-12 17:26:44] 2025-10-12 21:25:50,020 | INFO     | mean y: 2629526.395348837
[2025-10-12 17:26:44] 2025-10-12 21:25:50,020 | INFO     | -- intersect: 49105188630.62667
[2025-10-12 17:26:44] 2025-10-12 21:25:50,020 | INFO     | intersect: 49105188630.62667
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | chi2: 0.011251444377055542
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | -- intersect: 49105188630.62667
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | current memory leak: -27.89 B/s (using 43 data points, chi2=0.01)
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | could have reported an average CPU frequency of 2260 MHz (5 samples)
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | ..............................
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | . Timing measurements:
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | . get job = 0 s
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | . initial setup = 2 s
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | . payload setup = 6 s
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | . stage-in = 0 s
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | . payload execution = 3042 s
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | . stage-out = 0 s
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | . log creation = 0 s
[2025-10-12 17:26:44] 2025-10-12 21:25:50,021 | INFO     | ..............................
[2025-10-12 17:26:44] 2025-10-12 21:25:50,065 | INFO     | 
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | job summary report
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | --------------------------------------------------
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | PanDA job id: 6840428775
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | task id: 46676269
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | errors: (none)
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | pilot state: finished 
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | transexitcode: 0
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | exeerrorcode: 0
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | exeerrordiag: 
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | exitcode: 0
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | exitmsg: OK
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | cpuconsumptiontime: 22554 s
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | nevents: 400
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | neventsw: 0
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | pid: 22356
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | pgrp: 22356
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | corecount: 8
[2025-10-12 17:26:44] 2025-10-12 21:25:50,066 | INFO     | event service: False
[2025-10-12 17:26:44] 2025-10-12 21:25:50,067 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 3052: 2374665, 3053: 2383663, 3056: 2383719, 3062: 2384073}
[2025-10-12 17:26:44] 2025-10-12 21:25:50,067 | INFO     | --------------------------------------------------
[2025-10-12 17:26:44] 2025-10-12 21:25:50,067 | INFO     | 
[2025-10-12 17:26:44] 2025-10-12 21:25:50,067 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 17:26:44] 2025-10-12 21:25:50,083 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,083 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,083 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,083 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | job 6840428775 has completed (purged errors)
[2025-10-12 17:26:44] 2025-10-12 21:25:50,084 | INFO     | overall cleanup function is called
[2025-10-12 17:26:44] 2025-10-12 21:25:51,091 | INFO     | --- collectZombieJob: --- 10, [22356]
[2025-10-12 17:26:44] 2025-10-12 21:25:51,092 | INFO     | zombie collector waiting for pid 22356
[2025-10-12 17:26:44] 2025-10-12 21:25:51,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:26:44] 2025-10-12 21:25:51,092 | INFO     | collected zombie processes
[2025-10-12 17:26:44] 2025-10-12 21:25:51,092 | INFO     | will attempt to kill all subprocesses of pid=22356
[2025-10-12 17:26:44] 2025-10-12 21:25:51,189 | INFO     | process IDs to be killed: [22356] (in reverse order)
[2025-10-12 17:26:44] 2025-10-12 21:25:51,237 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:26:44] 2025-10-12 21:25:51,237 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:26:44] 2025-10-12 21:25:51,240 | INFO     | did not find any defunct processes belonging to 22356
[2025-10-12 17:26:44] 2025-10-12 21:25:51,242 | INFO     | did not find any defunct processes belonging to 22356
[2025-10-12 17:26:44] 2025-10-12 21:25:51,242 | INFO     | ready for new job
[2025-10-12 17:26:44] 2025-10-12 21:25:51,242 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:26:44] 2025-10-12 21:25:51,244 | INFO     | ***************************************
[2025-10-12 17:26:44] 2025-10-12 21:25:51,244 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:26:44] 2025-10-12 21:25:51,244 | INFO     | ***************************************
[2025-10-12 17:26:44] 2025-10-12 21:25:51,244 | INFO     | 
[2025-10-12 17:26:44] 2025-10-12 21:25:51,245 | INFO     | architecture information:
[2025-10-12 17:26:44] 2025-10-12 21:25:51,246 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:26:44] 2025-10-12 21:25:51,259 | INFO     | cat /etc/os-release:
[2025-10-12 17:26:44] NAME="CentOS Linux"
[2025-10-12 17:26:44] VERSION="7 (Core)"
[2025-10-12 17:26:44] ID="centos"
[2025-10-12 17:26:44] ID_LIKE="rhel fedora"
[2025-10-12 17:26:44] VERSION_ID="7"
[2025-10-12 17:26:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:26:44] ANSI_COLOR="0;31"
[2025-10-12 17:26:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:26:44] HOME_URL="https://www.centos.org/"
[2025-10-12 17:26:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:26:44] 
[2025-10-12 17:26:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:26:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:26:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:26:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:26:44] 
[2025-10-12 17:26:44] 2025-10-12 21:25:51,259 | INFO     | ***************************************
[2025-10-12 17:26:44] 2025-10-12 21:25:51,762 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 17:26:44] 2025-10-12 21:25:51,780 | INFO     | sufficient remaining disk space (32647413760 B)
[2025-10-12 17:26:44] 2025-10-12 21:25:51,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:26:44] 2025-10-12 21:25:51,781 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:26:44] 2025-10-12 21:25:51,781 | INFO     | update_server=False
[2025-10-12 17:26:44] 2025-10-12 21:25:51,781 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:26:44] 2025-10-12 21:25:51,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:26:44] 2025-10-12 21:25:52,054 | INFO     | all data control threads have been joined
[2025-10-12 17:26:44] 2025-10-12 21:25:52,092 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:26:44] 2025-10-12 21:25:52,136 | INFO     | all job control threads have been joined
[2025-10-12 17:26:44] 2025-10-12 21:25:52,398 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:26:44] 2025-10-12 21:25:52,399 | INFO     | aborting loop
[2025-10-12 17:26:44] 2025-10-12 21:25:52,584 | INFO     | all payload control threads have been joined
[2025-10-12 17:26:44] 2025-10-12 21:25:52,786 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:52,787 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:53,059 | INFO     | [data] control thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:53,141 | INFO     | [job] control thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:53,360 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:53,404 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:53,441 | INFO     | [job] validate thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:53,586 | INFO     | [payload] control thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:53,726 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:53,734 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:53,741 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:53,888 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:54,098 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:54,234 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:54,347 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:25:55,281 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:26:44] 2025-10-12 21:25:59,287 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:26:44] 2025-10-12 21:26:22,698 | INFO     | PID=16003 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 17:26:44] 2025-10-12 21:26:22,698 | INFO     | .. there are 2 such processes running
[2025-10-12 17:26:44] 2025-10-12 21:26:22,699 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:26:44] 2025-10-12 21:26:22,699 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:26:44] 2025-10-12 21:26:22,699 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:26:44] 2025-10-12 21:26:37,806 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:26:44] 2025-10-12 21:26:38,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328818902848)>', '<ExcThread(monitor, started 140328208144128)>']
[2025-10-12 17:26:44] 2025-10-12 21:26:39,774 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:26:44] 2025-10-12 21:26:39,775 | INFO     | [monitor] control thread has ended
[2025-10-12 17:26:44] 2025-10-12 21:26:43,855 | INFO     | all workflow threads have been joined
[2025-10-12 17:26:44] 2025-10-12 21:26:43,855 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:26:44] 2025-10-12 21:26:43,856 | INFO     | traces error code: 0
[2025-10-12 17:26:44] 2025-10-12 21:26:43,857 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:26:44] 2025-10-12 21:26:43,961 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:26:44] 2025-10-12 21:26:43,965 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:26:44] 2025-10-12 21:26:43,968 [wrapper] pilotpid: 16003
[2025-10-12 17:26:44] 2025-10-12 21:26:43,971 [wrapper] Pilot exit status: 0
[2025-10-12 17:26:44] 2025-10-12 21:26:43,981 [wrapper] pandaids: 6840428775
[2025-10-12 17:26:44] 2025-10-12 21:26:44,015 [wrapper] cleanup supervisor_pilot 27074 16004
[2025-10-12 17:26:44] 2025-10-12 21:26:44,017 [wrapper] Test setup, not cleaning
[2025-10-12 17:26:44] 2025-10-12 21:26:44,020 [wrapper] apfmon messages muted
[2025-10-12 17:26:44] 2025-10-12 21:26:44,023 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:26:44] 2025-10-12 21:26:44,026 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:26:44]  *** Error codes and diagnostics ***
[2025-10-12 17:26:44]     "exeErrorCode": 0,
[2025-10-12 17:26:44]     "exeErrorDiag": "",
[2025-10-12 17:26:44]     "pilotErrorCode": 0,
[2025-10-12 17:26:44]     "pilotErrorDiag": "",
[2025-10-12 17:26:44]  *** Listing of results directory ***
[2025-10-12 17:26:44] total 405068
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 12:49 pilot3.tar.gz
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 13:04 queuedata.json
[2025-10-12 17:26:44] -rwx------ 1 boincer umatlas     36292 Oct 12 13:05 runpilot2-wrapper.sh
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas       100 Oct 12 16:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:26:44] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 16:34 run_atlas
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas       105 Oct 12 16:34 job.xml
[2025-10-12 17:26:44] -rw-r--r-- 2 boincer umatlas 222121714 Oct 12 16:34 EVNT.46676267._004799.pool.root.1
[2025-10-12 17:26:44] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 16:34 start_atlas.sh
[2025-10-12 17:26:44] drwxrwx--x 2 boincer umatlas      4096 Oct 12 16:34 shared
[2025-10-12 17:26:44] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 16:34 input.tar.gz
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas         0 Oct 12 16:34 boinc_lockfile
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 16:34 pandaJob.out
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas    975536 Oct 12 16:34 agis_schedconf.cvmfs.json
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas   1560580 Oct 12 16:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:26:44] drwx------ 5 boincer umatlas      4096 Oct 12 16:34 pilot3
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas      6136 Oct 12 17:20 init_data.xml
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas 187189758 Oct 12 17:25 HITS.46676269._084359.pool.root.1
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas       529 Oct 12 17:25 boinc_task_state.xml
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas      1045 Oct 12 17:25 memory_monitor_summary.json
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas    308439 Oct 12 17:25 log.46676269._084359.job.log.tgz.1
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas      7836 Oct 12 17:25 heartbeat.json
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 17:26 boinc_mmap_file
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas        27 Oct 12 17:26 wrapper_checkpoint.txt
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas        95 Oct 12 17:26 pilot_heartbeat.json
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas      4821 Oct 12 17:26 pilotlog.txt
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas    476856 Oct 12 17:26 log.46676269._084359.job.log.1
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas       357 Oct 12 17:26 output.list
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas       620 Oct 12 17:26 runtime_log
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas    808960 Oct 12 17:26 result.tar.gz
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 17:26 runtime_log.err
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas       656 Oct 12 17:26 PJ7LDmEhES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAmkNDmml43No.diag
[2025-10-12 17:26:44] -rw-r--r-- 1 boincer umatlas     21802 Oct 12 17:26 stderr.txt
[2025-10-12 17:26:44] HITS file was successfully produced:
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas 187189758 Oct 12 17:25 shared/HITS.pool.root.1
[2025-10-12 17:26:44]  *** Contents of shared directory: ***
[2025-10-12 17:26:44] total 401092
[2025-10-12 17:26:44] -rw-r--r-- 2 boincer umatlas 222121714 Oct 12 16:34 ATLAS.root_0
[2025-10-12 17:26:44] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 16:34 start_atlas.sh
[2025-10-12 17:26:44] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 16:34 input.tar.gz
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas 187189758 Oct 12 17:25 HITS.pool.root.1
[2025-10-12 17:26:44] -rw------- 1 boincer umatlas    808960 Oct 12 17:26 result.tar.gz
17:26:45 (10313): run_atlas exited; CPU time 22549.045694
17:26:45 (10313): called boinc_finish(0)

</stderr_txt>
]]>

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