Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:31:54 (12963): wrapper (7.7.26015): starting
16:31:54 (12963): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 16:31:54] Arguments: --nthreads 12
[2025-10-12 16:31:54] Threads: 12
[2025-10-12 16:31:54] Checking for CVMFS
[2025-10-12 16:31:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:31:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:31:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:31:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:31:54] 2.11.2.0 2945 223365 97680 151636 3 58 15988742 20275200 1 130560 2 110228778 99.984 13434561 12785 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:31:54] CVMFS is ok
[2025-10-12 16:31:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:31:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:31:54] Further information can be found at the LHC@home message board.
[2025-10-12 16:31:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:31:54] Checking for apptainer binary...
[2025-10-12 16:31:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:31:54] Running /usr/bin/apptainer --version
[2025-10-12 16:31:54] apptainer version 1.3.2-1.el7
[2025-10-12 16:31:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:31:56] c-205-2.aglt2.org
[2025-10-12 16:31:56] apptainer works
[2025-10-12 16:31:56] Set ATHENA_PROC_NUMBER=12
[2025-10-12 16:31:56] Set ATHENA_CORE_NUMBER=12
[2025-10-12 16:31:56] Starting ATLAS job with PandaID=6840428829
[2025-10-12 16:31:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:44:24]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:44:24]  protocol_id=None
[2025-10-12 17:44:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 17:44:24]  replicas=None
[2025-10-12 17:44:24]  scope=mc23_13p6TeV
[2025-10-12 17:44:24]  status=None
[2025-10-12 17:44:24]  status_code=0
[2025-10-12 17:44:24]  storage_token=
[2025-10-12 17:44:24]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840428829/log.46676269._084413.job.log.tgz.1
[2025-10-12 17:44:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0f/8d/log.46676269._084413.job.log.tgz.1
[2025-10-12 17:44:24]  workdir=None
[2025-10-12 17:44:24] ]
[2025-10-12 17:44:24] 2025-10-12 21:43:32,148 | INFO     | transferring file log.46676269._084413.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840428829/log.46676269._084413.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 17:44:24] 2025-10-12 21:43:32,149 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840428829/log.46676269._084413.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._084413.job
[2025-10-12 17:44:24] 2025-10-12 21:43:32,170 | INFO     | adding to output.list: log.46676269._084413.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0f/8d/log.46676269._084413.job.log.tg
[2025-10-12 17:44:24] 2025-10-12 21:43:32,171 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:44:24] 2025-10-12 21:43:32,171 | INFO     | summary of transferred files:
[2025-10-12 17:44:24] 2025-10-12 21:43:32,172 | INFO     |  -- lfn=log.46676269._084413.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:44:24] 2025-10-12 21:43:32,172 | INFO     | stage-out finished correctly
[2025-10-12 17:44:24] 2025-10-12 21:43:32,985 | INFO     | PID=16689 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 17:44:24] 2025-10-12 21:43:33,438 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:44:24] 2025-10-12 21:43:33,593 | INFO     | job 6840428829 has state=finished
[2025-10-12 17:44:24] 2025-10-12 21:43:33,593 | INFO     | preparing for final server update for job 6840428829 in state='finished'
[2025-10-12 17:44:24] 2025-10-12 21:43:33,594 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:44:24] 2025-10-12 21:43:33,594 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:44:24] 2025-10-12 21:43:33,594 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:44:24] 2025-10-12 21:43:33,594 | INFO     | job 6840428829 has finished - writing final server update
[2025-10-12 17:44:24] 2025-10-12 21:43:33,595 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:44:24] 2025-10-12 21:43:33,595 | INFO     | executing command: lscpu
[2025-10-12 17:44:24] 2025-10-12 21:43:33,622 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:44:24] 2025-10-12 21:43:33,986 | INFO     | time since job start (4282s) is within the limit (172800.0s)
[2025-10-12 17:44:24] 2025-10-12 21:43:35,992 | INFO     | time since job start (4284s) is within the limit (172800.0s)
[2025-10-12 17:44:24] 2025-10-12 21:43:37,071 | WARNING  | process 23068 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 17:44:24] 2025-10-12 21:43:37,071 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840428829/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:44:24] 2025-10-12 21:43:37,158 | INFO     | number of running child processes to parent process 23068: 1
[2025-10-12 17:44:24] 2025-10-12 21:43:37,158 | INFO     | maximum number of monitored processes: 6
[2025-10-12 17:44:24] 2025-10-12 21:43:37,997 | INFO     | time since job start (4286s) is within the limit (172800.0s)
[2025-10-12 17:44:24] 2025-10-12 21:43:38,322 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 17:44:24] 2025-10-12 21:43:38,325 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 17:44:24] 2025-10-12 21:43:38,328 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840428829/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:44:24] 2025-10-12 21:43:38,329 | INFO     | extracted standard info from prmon json
[2025-10-12 17:44:24] 2025-10-12 21:43:38,329 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:44:24] 2025-10-12 21:43:38,329 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:44:24] 2025-10-12 21:43:38,330 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:44:24] 2025-10-12 21:43:38,330 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:44:24] 2025-10-12 21:43:38,331 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:44:24] 2025-10-12 21:43:38,331 | INFO     | sum of square deviations: 77515872.0
[2025-10-12 17:44:24] 2025-10-12 21:43:38,332 | INFO     | sum of deviations: -7417244492.000001
[2025-10-12 17:44:24] 2025-10-12 21:43:38,332 | INFO     | mean x: 1760303356.0
[2025-10-12 17:44:24] 2025-10-12 21:43:38,332 | INFO     | mean y: 2848751.285714286
[2025-10-12 17:44:24] 2025-10-12 21:43:38,332 | INFO     | -- intersect: 168440615555.2264
[2025-10-12 17:44:24] 2025-10-12 21:43:38,332 | INFO     | intersect: 168440615555.2264
[2025-10-12 17:44:24] 2025-10-12 21:43:38,332 | INFO     | chi2: 0.05153325611261849
[2025-10-12 17:44:24] 2025-10-12 21:43:38,333 | INFO     | -- intersect: 168440615555.2264
[2025-10-12 17:44:24] 2025-10-12 21:43:38,333 | INFO     | current memory leak: -95.69 B/s (using 63 data points, chi2=0.05)
[2025-10-12 17:44:24] 2025-10-12 21:43:38,333 | INFO     | could have reported an average CPU frequency of 2060 MHz (6 samples)
[2025-10-12 17:44:24] 2025-10-12 21:43:38,333 | INFO     | ..............................
[2025-10-12 17:44:24] 2025-10-12 21:43:38,333 | INFO     | . Timing measurements:
[2025-10-12 17:44:24] 2025-10-12 21:43:38,333 | INFO     | . get job = 0 s
[2025-10-12 17:44:24] 2025-10-12 21:43:38,333 | INFO     | . initial setup = 2 s
[2025-10-12 17:44:24] 2025-10-12 21:43:38,334 | INFO     | . payload setup = 7 s
[2025-10-12 17:44:24] 2025-10-12 21:43:38,334 | INFO     | . stage-in = 0 s
[2025-10-12 17:44:24] 2025-10-12 21:43:38,334 | INFO     | . payload execution = 4252 s
[2025-10-12 17:44:24] 2025-10-12 21:43:38,334 | INFO     | . stage-out = 0 s
[2025-10-12 17:44:24] 2025-10-12 21:43:38,334 | INFO     | . log creation = 0 s
[2025-10-12 17:44:24] 2025-10-12 21:43:38,334 | INFO     | ..............................
[2025-10-12 17:44:24] 2025-10-12 21:43:38,420 | INFO     | 
[2025-10-12 17:44:24] 2025-10-12 21:43:38,420 | INFO     | job summary report
[2025-10-12 17:44:24] 2025-10-12 21:43:38,420 | INFO     | --------------------------------------------------
[2025-10-12 17:44:24] 2025-10-12 21:43:38,420 | INFO     | PanDA job id: 6840428829
[2025-10-12 17:44:24] 2025-10-12 21:43:38,420 | INFO     | task id: 46676269
[2025-10-12 17:44:24] 2025-10-12 21:43:38,421 | INFO     | errors: (none)
[2025-10-12 17:44:24] 2025-10-12 21:43:38,421 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:44:24] 2025-10-12 21:43:38,421 | INFO     | pilot state: finished 
[2025-10-12 17:44:24] 2025-10-12 21:43:38,421 | INFO     | transexitcode: 0
[2025-10-12 17:44:24] 2025-10-12 21:43:38,421 | INFO     | exeerrorcode: 0
[2025-10-12 17:44:24] 2025-10-12 21:43:38,421 | INFO     | exeerrordiag: 
[2025-10-12 17:44:24] 2025-10-12 21:43:38,421 | INFO     | exitcode: 0
[2025-10-12 17:44:24] 2025-10-12 21:43:38,421 | INFO     | exitmsg: OK
[2025-10-12 17:44:24] 2025-10-12 21:43:38,421 | INFO     | cpuconsumptiontime: 46464 s
[2025-10-12 17:44:24] 2025-10-12 21:43:38,421 | INFO     | nevents: 400
[2025-10-12 17:44:24] 2025-10-12 21:43:38,422 | INFO     | neventsw: 0
[2025-10-12 17:44:24] 2025-10-12 21:43:38,422 | INFO     | pid: 23068
[2025-10-12 17:44:24] 2025-10-12 21:43:38,422 | INFO     | pgrp: 23068
[2025-10-12 17:44:24] 2025-10-12 21:43:38,422 | INFO     | corecount: 12
[2025-10-12 17:44:24] 2025-10-12 21:43:38,422 | INFO     | event service: False
[2025-10-12 17:44:24] 2025-10-12 21:43:38,422 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4263: 2375195, 4264: 2384193, 4266: 2384249, 4271: 2384571}
[2025-10-12 17:44:24] 2025-10-12 21:43:38,422 | INFO     | --------------------------------------------------
[2025-10-12 17:44:24] 2025-10-12 21:43:38,422 | INFO     | 
[2025-10-12 17:44:24] 2025-10-12 21:43:38,422 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 17:44:24] 2025-10-12 21:43:38,445 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,446 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,446 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,446 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,446 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,446 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,447 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,447 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,447 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,447 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,447 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,447 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,448 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,448 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,448 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,448 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,448 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,448 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:44:24] 2025-10-12 21:43:38,449 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,449 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:44:24] 2025-10-12 21:43:38,449 | INFO     | job 6840428829 has completed (purged errors)
[2025-10-12 17:44:24] 2025-10-12 21:43:38,449 | INFO     | overall cleanup function is called
[2025-10-12 17:44:24] 2025-10-12 21:43:39,457 | INFO     | --- collectZombieJob: --- 10, [23068]
[2025-10-12 17:44:24] 2025-10-12 21:43:39,457 | INFO     | zombie collector waiting for pid 23068
[2025-10-12 17:44:24] 2025-10-12 21:43:39,457 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:44:24] 2025-10-12 21:43:39,458 | INFO     | collected zombie processes
[2025-10-12 17:44:24] 2025-10-12 21:43:39,458 | INFO     | will attempt to kill all subprocesses of pid=23068
[2025-10-12 17:44:24] 2025-10-12 21:43:39,546 | INFO     | process IDs to be killed: [23068] (in reverse order)
[2025-10-12 17:44:24] 2025-10-12 21:43:39,596 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:44:24] 2025-10-12 21:43:39,597 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:44:24] 2025-10-12 21:43:39,600 | INFO     | did not find any defunct processes belonging to 23068
[2025-10-12 17:44:24] 2025-10-12 21:43:39,602 | INFO     | did not find any defunct processes belonging to 23068
[2025-10-12 17:44:24] 2025-10-12 21:43:39,603 | INFO     | ready for new job
[2025-10-12 17:44:24] 2025-10-12 21:43:39,603 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:44:24] 2025-10-12 21:43:39,604 | INFO     | ***************************************
[2025-10-12 17:44:24] 2025-10-12 21:43:39,604 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:44:24] 2025-10-12 21:43:39,604 | INFO     | ***************************************
[2025-10-12 17:44:24] 2025-10-12 21:43:39,604 | INFO     | 
[2025-10-12 17:44:24] 2025-10-12 21:43:39,604 | INFO     | architecture information:
[2025-10-12 17:44:24] 2025-10-12 21:43:39,605 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:44:24] 2025-10-12 21:43:39,620 | INFO     | cat /etc/os-release:
[2025-10-12 17:44:24] NAME="CentOS Linux"
[2025-10-12 17:44:24] VERSION="7 (Core)"
[2025-10-12 17:44:24] ID="centos"
[2025-10-12 17:44:24] ID_LIKE="rhel fedora"
[2025-10-12 17:44:24] VERSION_ID="7"
[2025-10-12 17:44:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:44:24] ANSI_COLOR="0;31"
[2025-10-12 17:44:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:44:24] HOME_URL="https://www.centos.org/"
[2025-10-12 17:44:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:44:24] 
[2025-10-12 17:44:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:44:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:44:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:44:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:44:24] 
[2025-10-12 17:44:24] 2025-10-12 21:43:39,620 | INFO     | ***************************************
[2025-10-12 17:44:24] 2025-10-12 21:43:40,123 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 17:44:24] 2025-10-12 21:43:40,139 | INFO     | sufficient remaining disk space (29430382592 B)
[2025-10-12 17:44:24] 2025-10-12 21:43:40,139 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:44:24] 2025-10-12 21:43:40,140 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:44:24] 2025-10-12 21:43:40,140 | INFO     | update_server=False
[2025-10-12 17:44:24] 2025-10-12 21:43:40,140 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:44:24] 2025-10-12 21:43:40,140 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:44:24] 2025-10-12 21:43:40,141 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:44:24] 2025-10-12 21:43:40,264 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:44:24] 2025-10-12 21:43:40,588 | INFO     | all job control threads have been joined
[2025-10-12 17:44:24] 2025-10-12 21:43:40,597 | INFO     | all data control threads have been joined
[2025-10-12 17:44:24] 2025-10-12 21:43:40,666 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:44:24] 2025-10-12 21:43:40,666 | INFO     | aborting loop
[2025-10-12 17:44:24] 2025-10-12 21:43:40,906 | INFO     | all payload control threads have been joined
[2025-10-12 17:44:24] 2025-10-12 21:43:41,146 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:41,146 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:41,238 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:41,594 | INFO     | [job] control thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:41,602 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:41,603 | INFO     | [data] control thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:41,671 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:41,912 | INFO     | [payload] control thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:41,941 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:42,097 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:42,269 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:42,364 | INFO     | [job] validate thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:42,503 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:42,734 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:44,147 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:43:50,597 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:44:24] 2025-10-12 21:43:51,599 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:44:24] 2025-10-12 21:44:11,202 | INFO     | PID=16689 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 17:44:24] 2025-10-12 21:44:11,203 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:44:24] 2025-10-12 21:44:11,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:44:24] 2025-10-12 21:44:11,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:44:24] 2025-10-12 21:44:17,763 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:44:24] 2025-10-12 21:44:19,175 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140392308279104)>', '<ExcThread(monitor, started 140391139505920)>']
[2025-10-12 17:44:24] 2025-10-12 21:44:19,244 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:44:24] 2025-10-12 21:44:19,245 | INFO     | [monitor] control thread has ended
[2025-10-12 17:44:24] 2025-10-12 21:44:24,191 | INFO     | all workflow threads have been joined
[2025-10-12 17:44:24] 2025-10-12 21:44:24,191 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:44:24] 2025-10-12 21:44:24,191 | INFO     | traces error code: 0
[2025-10-12 17:44:24] 2025-10-12 21:44:24,191 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:44:24] 2025-10-12 21:44:24,279 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:44:24] 2025-10-12 21:44:24,283 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:44:24] 2025-10-12 21:44:24,287 [wrapper] pilotpid: 16689
[2025-10-12 17:44:24] 2025-10-12 21:44:24,291 [wrapper] Pilot exit status: 0
[2025-10-12 17:44:24] 2025-10-12 21:44:24,306 [wrapper] pandaids: 6840428829
[2025-10-12 17:44:24] 2025-10-12 21:44:24,354 [wrapper] cleanup supervisor_pilot 26694 16690
[2025-10-12 17:44:24] 2025-10-12 21:44:24,358 [wrapper] Test setup, not cleaning
[2025-10-12 17:44:24] 2025-10-12 21:44:24,362 [wrapper] apfmon messages muted
[2025-10-12 17:44:24] 2025-10-12 21:44:24,366 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:44:24] 2025-10-12 21:44:24,370 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:44:24]  *** Error codes and diagnostics ***
[2025-10-12 17:44:24]     "exeErrorCode": 0,
[2025-10-12 17:44:24]     "exeErrorDiag": "",
[2025-10-12 17:44:24]     "pilotErrorCode": 0,
[2025-10-12 17:44:24]     "pilotErrorDiag": "",
[2025-10-12 17:44:24]  *** Listing of results directory ***
[2025-10-12 17:44:24] total 414584
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 12:49 pilot3.tar.gz
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 13:11 queuedata.json
[2025-10-12 17:44:24] -rwx------ 1 boincer umatlas     36292 Oct 12 13:11 runpilot2-wrapper.sh
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas       100 Oct 12 16:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:44:24] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 16:31 run_atlas
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas       105 Oct 12 16:31 job.xml
[2025-10-12 17:44:24] -rw-r--r-- 2 boincer umatlas 221677591 Oct 12 16:31 EVNT.46676267._004801.pool.root.1
[2025-10-12 17:44:24] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 16:31 start_atlas.sh
[2025-10-12 17:44:24] drwxrwx--x 2 boincer umatlas      4096 Oct 12 16:31 shared
[2025-10-12 17:44:24] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 16:31 input.tar.gz
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas         0 Oct 12 16:31 boinc_lockfile
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 16:31 pandaJob.out
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas    975536 Oct 12 16:32 agis_schedconf.cvmfs.json
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas   1560580 Oct 12 16:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:44:24] drwx------ 5 boincer umatlas      4096 Oct 12 16:32 pilot3
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas      5951 Oct 12 17:40 init_data.xml
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas 196926462 Oct 12 17:43 HITS.46676269._084413.pool.root.1
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas      1050 Oct 12 17:43 memory_monitor_summary.json
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas       529 Oct 12 17:43 boinc_task_state.xml
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas    386013 Oct 12 17:43 log.46676269._084413.job.log.tgz.1
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas      7856 Oct 12 17:43 heartbeat.json
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 17:44 boinc_mmap_file
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas        27 Oct 12 17:44 wrapper_checkpoint.txt
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas        95 Oct 12 17:44 pilot_heartbeat.json
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas      4818 Oct 12 17:44 pilotlog.txt
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas    625063 Oct 12 17:44 log.46676269._084413.job.log.1
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas       357 Oct 12 17:44 output.list
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas       620 Oct 12 17:44 runtime_log
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas   1034240 Oct 12 17:44 result.tar.gz
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas       658 Oct 12 17:44 yE2NDmXmES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8nkNDmjcdMxm.diag
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 17:44 runtime_log.err
[2025-10-12 17:44:24] -rw-r--r-- 1 boincer umatlas     21856 Oct 12 17:44 stderr.txt
[2025-10-12 17:44:24] HITS file was successfully produced:
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas 196926462 Oct 12 17:43 shared/HITS.pool.root.1
[2025-10-12 17:44:24]  *** Contents of shared directory: ***
[2025-10-12 17:44:24] total 410388
[2025-10-12 17:44:24] -rw-r--r-- 2 boincer umatlas 221677591 Oct 12 16:31 ATLAS.root_0
[2025-10-12 17:44:24] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 16:31 start_atlas.sh
[2025-10-12 17:44:24] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 16:31 input.tar.gz
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas 196926462 Oct 12 17:43 HITS.pool.root.1
[2025-10-12 17:44:24] -rw------- 1 boincer umatlas   1034240 Oct 12 17:44 result.tar.gz
17:44:26 (12963): run_atlas exited; CPU time 46443.844768
17:44:26 (12963): called boinc_finish(0)

</stderr_txt>
]]>

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