Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
08:38:11 (2974285): wrapper (7.7.26015): starting
08:38:11 (2974285): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 08:38:11] Arguments: --nthreads 4
[2025-10-13 08:38:11] Threads: 4
[2025-10-13 08:38:11] Checking for CVMFS
[2025-10-13 08:38:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:38:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:38:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:38:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:38:12] 2.13.1.0 3889163 5304 60976 151652 3 9 2859349 4096000 922 130560 0 9742113 99.996 186800 1654 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 08:38:12] CVMFS is ok
[2025-10-13 08:38:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:38:12] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 08:38:12] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 08:38:12] Further information can be found at the LHC@home message board.
[2025-10-13 08:38:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:38:12] Checking for apptainer binary...
[2025-10-13 08:38:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:38:12] Running /usr/bin/apptainer --version
[2025-10-13 08:38:12] apptainer version 1.2.3
[2025-10-13 08:38:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:38:12] Ryzen-7-7700-Zen4-Deb12
[2025-10-13 08:38:12] apptainer works
[2025-10-13 08:38:12] Set ATHENA_PROC_NUMBER=4
[2025-10-13 08:38:12] Set ATHENA_CORE_NUMBER=4
[2025-10-13 08:38:12] Starting ATLAS job with PandaID=6839820776
[2025-10-13 08:38:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:51:30]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:51:30]  status=None
[2025-10-13 09:51:30]  status_code=0
[2025-10-13 09:51:30]  storage_token=
[2025-10-13 09:51:30]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6839820776/log.46676269._074842.job.log.tgz.1
[2025-10-13 09:51:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/20/log.46676269._074842.job.log.tgz.1
[2025-10-13 09:51:30]  workdir=None
[2025-10-13 09:51:30] ]
[2025-10-13 09:51:30] 2025-10-13 07:50:40,400 | INFO     | transferring file log.46676269._074842.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6839820776/log.46676269._074842.job.log.tgz.1 to /var/lib/boinc
[2025-10-13 09:51:30] 2025-10-13 07:50:40,400 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6839820776/log.46676269._074842.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.466762
[2025-10-13 09:51:30] 2025-10-13 07:50:40,433 | INFO     | adding to output.list: log.46676269._074842.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/20/log.46676269._074842.job.log.tg
[2025-10-13 09:51:30] 2025-10-13 07:50:40,433 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 09:51:30] 2025-10-13 07:50:40,433 | INFO     | summary of transferred files:
[2025-10-13 09:51:30] 2025-10-13 07:50:40,433 | INFO     |  -- lfn=log.46676269._074842.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 09:51:30] 2025-10-13 07:50:40,433 | INFO     | stage-out finished correctly
[2025-10-13 09:51:30] 2025-10-13 07:50:41,487 | INFO     | monitor loop #334: job 0:6839820776 is in state 'finished'
[2025-10-13 09:51:30] 2025-10-13 07:50:41,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 09:51:30] 2025-10-13 07:50:41,799 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 09:51:30] 2025-10-13 07:50:41,945 | INFO     | time since job start (4343s) is within the limit (172800.0s)
[2025-10-13 09:51:30] 2025-10-13 07:50:42,625 | INFO     | job 6839820776 has state=finished
[2025-10-13 09:51:30] 2025-10-13 07:50:42,625 | INFO     | preparing for final server update for job 6839820776 in state='finished'
[2025-10-13 09:51:30] 2025-10-13 07:50:42,625 | INFO     | this job has now completed (state=finished)
[2025-10-13 09:51:30] 2025-10-13 07:50:42,625 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 09:51:30] 2025-10-13 07:50:42,625 | INFO     | log transfer has been attempted: DONE
[2025-10-13 09:51:30] 2025-10-13 07:50:42,625 | INFO     | job 6839820776 has finished - writing final server update
[2025-10-13 09:51:30] 2025-10-13 07:50:42,625 | INFO     | total number of processed events: 400 (read)
[2025-10-13 09:51:30] 2025-10-13 07:50:42,629 | INFO     | executing command: lscpu
[2025-10-13 09:51:30] 2025-10-13 07:50:42,643 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 09:51:30] 2025-10-13 07:50:43,949 | INFO     | time since job start (4345s) is within the limit (172800.0s)
[2025-10-13 09:51:30] 2025-10-13 07:50:43,988 | INFO     | monitor loop #335: job 0:6839820776 is in state 'finished'
[2025-10-13 09:51:30] 2025-10-13 07:50:43,989 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 09:51:30] 2025-10-13 07:50:45,953 | INFO     | time since job start (4347s) is within the limit (172800.0s)
[2025-10-13 09:51:30] 2025-10-13 07:50:46,491 | INFO     | monitor loop #336: job 0:6839820776 is in state 'finished'
[2025-10-13 09:51:30] 2025-10-13 07:50:46,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 09:51:30] 2025-10-13 07:50:46,874 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 09:51:30] 2025-10-13 07:50:46,875 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4907.622625000001
[2025-10-13 09:51:30] 2025-10-13 07:50:46,877 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6839820776/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:51:30] 2025-10-13 07:50:46,877 | INFO     | extracted standard info from prmon json
[2025-10-13 09:51:30] 2025-10-13 07:50:46,877 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 09:51:30] 2025-10-13 07:50:46,877 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 09:51:30] 2025-10-13 07:50:46,877 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 09:51:30] 2025-10-13 07:50:46,877 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 09:51:30] 2025-10-13 07:50:46,878 | INFO     | fitting pss+swap vs Time
[2025-10-13 09:51:30] 2025-10-13 07:50:46,878 | INFO     | sum of square deviations: 81266640.0
[2025-10-13 09:51:30] 2025-10-13 07:50:46,878 | INFO     | sum of deviations: -12349635318.0
[2025-10-13 09:51:30] 2025-10-13 07:50:46,878 | INFO     | mean x: 1760339742.5
[2025-10-13 09:51:30] 2025-10-13 07:50:46,878 | INFO     | mean y: 2561030.40625
[2025-10-13 09:51:30] 2025-10-13 07:50:46,878 | INFO     | -- intersect: 267511514958.57437
[2025-10-13 09:51:30] 2025-10-13 07:50:46,878 | INFO     | intersect: 267511514958.57437
[2025-10-13 09:51:30] 2025-10-13 07:50:46,878 | INFO     | chi2: 0.10831089976108146
[2025-10-13 09:51:30] 2025-10-13 07:50:46,878 | INFO     | -- intersect: 267511514958.57437
[2025-10-13 09:51:30] 2025-10-13 07:50:46,878 | INFO     | current memory leak: -151.96 B/s (using 64 data points, chi2=0.11)
[2025-10-13 09:51:30] 2025-10-13 07:50:46,879 | INFO     | could have reported an average CPU frequency of 4912 MHz (6 samples)
[2025-10-13 09:51:30] 2025-10-13 07:50:46,879 | INFO     | ..............................
[2025-10-13 09:51:30] 2025-10-13 07:50:46,879 | INFO     | . Timing measurements:
[2025-10-13 09:51:30] 2025-10-13 07:50:46,879 | INFO     | . get job = 0 s
[2025-10-13 09:51:30] 2025-10-13 07:50:46,879 | INFO     | . initial setup = 1 s
[2025-10-13 09:51:30] 2025-10-13 07:50:46,879 | INFO     | . payload setup = 2 s
[2025-10-13 09:51:30] 2025-10-13 07:50:46,879 | INFO     | . stage-in = 0 s
[2025-10-13 09:51:30] 2025-10-13 07:50:46,879 | INFO     | . payload execution = 4323 s
[2025-10-13 09:51:30] 2025-10-13 07:50:46,879 | INFO     | . stage-out = 0 s
[2025-10-13 09:51:30] 2025-10-13 07:50:46,879 | INFO     | . log creation = 0 s
[2025-10-13 09:51:30] 2025-10-13 07:50:46,879 | INFO     | ..............................
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | 
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | job summary report
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | --------------------------------------------------
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | PanDA job id: 6839820776
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | task id: 46676269
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | errors: (none)
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | pilot state: finished 
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | transexitcode: 0
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | exeerrorcode: 0
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | exeerrordiag: 
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | exitcode: 0
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | exitmsg: OK
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | cpuconsumptiontime: 16833 s
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | nevents: 400
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | neventsw: 0
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | pid: 2985045
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | pgrp: 2985045
[2025-10-13 09:51:30] 2025-10-13 07:50:46,950 | INFO     | corecount: 4
[2025-10-13 09:51:30] 2025-10-13 07:50:46,951 | INFO     | event service: False
[2025-10-13 09:51:30] 2025-10-13 07:50:46,951 | INFO     | sizes: {0: 2348864, 2: 2349126, 10: 2349154, 4329: 2384391, 4331: 2384391, 4336: 2384585}
[2025-10-13 09:51:30] 2025-10-13 07:50:46,951 | INFO     | --------------------------------------------------
[2025-10-13 09:51:30] 2025-10-13 07:50:46,951 | INFO     | 
[2025-10-13 09:51:30] 2025-10-13 07:50:46,951 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:51:30] 2025-10-13 07:50:46,961 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,962 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:51:30] 2025-10-13 07:50:46,962 | INFO     | job 6839820776 has completed (purged errors)
[2025-10-13 09:51:30] 2025-10-13 07:50:46,962 | INFO     | overall cleanup function is called
[2025-10-13 09:51:30] 2025-10-13 07:50:47,964 | INFO     | --- collectZombieJob: --- 10, [2985045]
[2025-10-13 09:51:30] 2025-10-13 07:50:47,964 | INFO     | zombie collector waiting for pid 2985045
[2025-10-13 09:51:30] 2025-10-13 07:50:47,965 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:51:30] 2025-10-13 07:50:47,965 | INFO     | collected zombie processes
[2025-10-13 09:51:30] 2025-10-13 07:50:47,965 | INFO     | will attempt to kill all subprocesses of pid=2985045
[2025-10-13 09:51:30] 2025-10-13 07:50:47,992 | INFO     | process IDs to be killed: [2985045] (in reverse order)
[2025-10-13 09:51:30] 2025-10-13 07:50:48,016 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:51:30] 2025-10-13 07:50:48,017 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:51:30] 2025-10-13 07:50:48,018 | INFO     | did not find any defunct processes belonging to 2985045
[2025-10-13 09:51:30] 2025-10-13 07:50:48,019 | INFO     | did not find any defunct processes belonging to 2985045
[2025-10-13 09:51:30] 2025-10-13 07:50:48,019 | INFO     | ready for new job
[2025-10-13 09:51:30] 2025-10-13 07:50:48,019 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:51:30] 2025-10-13 07:50:48,020 | INFO     | ***************************************
[2025-10-13 09:51:30] 2025-10-13 07:50:48,020 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:51:30] 2025-10-13 07:50:48,020 | INFO     | ***************************************
[2025-10-13 09:51:30] 2025-10-13 07:50:48,020 | INFO     | 
[2025-10-13 09:51:30] 2025-10-13 07:50:48,020 | INFO     | architecture information:
[2025-10-13 09:51:30] 2025-10-13 07:50:48,020 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:51:30] 2025-10-13 07:50:48,027 | INFO     | cat /etc/os-release:
[2025-10-13 09:51:30] NAME="CentOS Linux"
[2025-10-13 09:51:30] VERSION="7 (Core)"
[2025-10-13 09:51:30] ID="centos"
[2025-10-13 09:51:30] ID_LIKE="rhel fedora"
[2025-10-13 09:51:30] VERSION_ID="7"
[2025-10-13 09:51:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:51:30] ANSI_COLOR="0;31"
[2025-10-13 09:51:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:51:30] HOME_URL="https://www.centos.org/"
[2025-10-13 09:51:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:51:30] 
[2025-10-13 09:51:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:51:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:51:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:51:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:51:30] 
[2025-10-13 09:51:30] 2025-10-13 07:50:48,027 | INFO     | ***************************************
[2025-10-13 09:51:30] 2025-10-13 07:50:48,528 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-10-13 09:51:30] 2025-10-13 07:50:48,536 | INFO     | sufficient remaining disk space (883832127488 B)
[2025-10-13 09:51:30] 2025-10-13 07:50:48,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:51:30] 2025-10-13 07:50:48,536 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:51:30] 2025-10-13 07:50:48,536 | INFO     | update_server=False
[2025-10-13 09:51:30] 2025-10-13 07:50:48,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:51:30] 2025-10-13 07:50:48,537 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:51:30] 2025-10-13 07:50:48,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:51:30] 2025-10-13 07:50:48,537 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:51:30] 2025-10-13 07:50:48,572 | INFO     | all data control threads have been joined
[2025-10-13 09:51:30] 2025-10-13 07:50:48,992 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 09:51:30] 2025-10-13 07:50:48,993 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 09:51:30] 2025-10-13 07:50:48,993 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:51:30] 2025-10-13 07:50:48,993 | INFO     | will abort loop
[2025-10-13 09:51:30] 2025-10-13 07:50:49,358 | INFO     | all payload control threads have been joined
[2025-10-13 09:51:30] 2025-10-13 07:50:49,540 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:49,542 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:49,571 | INFO     | all job control threads have been joined
[2025-10-13 09:51:30] 2025-10-13 07:50:49,576 | INFO     | [data] control thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:49,696 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:49,998 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:50,084 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:50,288 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:50,363 | INFO     | [payload] control thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:50,540 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:50,576 | INFO     | [job] control thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:50,716 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:50,748 | INFO     | [job] validate thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:50,836 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:50,908 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:52,540 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:50:58,852 | INFO     | job.realtimelogging is not enabled
[2025-10-13 09:51:30] 2025-10-13 07:50:59,856 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:51:30] 2025-10-13 07:51:19,005 | INFO     | PID=2978359 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:51:30] 2025-10-13 07:51:19,005 | INFO     | .. there are 2 such processes running
[2025-10-13 09:51:30] 2025-10-13 07:51:19,005 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:51:30] 2025-10-13 07:51:19,005 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:51:30] 2025-10-13 07:51:19,005 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:51:30] 2025-10-13 07:51:25,480 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:51:30] 2025-10-13 07:51:25,556 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140556883404608)>', '<ExcThread(monitor, started 140556395067136)>']
[2025-10-13 09:51:30] 2025-10-13 07:51:26,032 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:51:30] 2025-10-13 07:51:26,033 | INFO     | [monitor] control thread has ended
[2025-10-13 09:51:30] 2025-10-13 07:51:30,580 | INFO     | all workflow threads have been joined
[2025-10-13 09:51:30] 2025-10-13 07:51:30,599 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:51:30] 2025-10-13 07:51:30,599 | INFO     | traces error code: 0
[2025-10-13 09:51:30] 2025-10-13 07:51:30,599 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:51:30] 2025-10-13 07:51:30,654 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:51:30] 2025-10-13 07:51:30,655 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:51:30] 2025-10-13 07:51:30,656 [wrapper] pilotpid: 2978359
[2025-10-13 09:51:30] 2025-10-13 07:51:30,657 [wrapper] Pilot exit status: 0
[2025-10-13 09:51:30] 2025-10-13 07:51:30,667 [wrapper] pandaids: 6839820776
[2025-10-13 09:51:30] 2025-10-13 07:51:30,677 [wrapper] cleanup supervisor_pilot 3010284 2978360
[2025-10-13 09:51:30] 2025-10-13 07:51:30,678 [wrapper] Test setup, not cleaning
[2025-10-13 09:51:30] 2025-10-13 07:51:30,679 [wrapper] apfmon messages muted
[2025-10-13 09:51:30] 2025-10-13 07:51:30,680 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:51:30] 2025-10-13 07:51:30,681 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:51:30]  *** Error codes and diagnostics ***
[2025-10-13 09:51:30]     "exeErrorCode": 0,
[2025-10-13 09:51:30]     "exeErrorDiag": "",
[2025-10-13 09:51:30]     "pilotErrorCode": 0,
[2025-10-13 09:51:30]     "pilotErrorDiag": "",
[2025-10-13 09:51:30]  *** Listing of results directory ***
[2025-10-13 09:51:30] total 409044
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc    557409 Oct 12 10:52 pilot3.tar.gz
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc      5112 Oct 12 10:56 queuedata.json
[2025-10-13 09:51:30] -rwx------ 1 boinc boinc     36292 Oct 12 10:56 runpilot2-wrapper.sh
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:51:30] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:38 run_atlas
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:38 job.xml
[2025-10-13 09:51:30] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:38 start_atlas.sh
[2025-10-13 09:51:30] drwxrwx--x 2 boinc boinc      4096 Oct 13 08:38 shared
[2025-10-13 09:51:30] -rw-r--r-- 2 boinc boinc    569684 Oct 13 08:38 input.tar.gz
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc      6737 Oct 13 08:38 init_data.xml
[2025-10-13 09:51:30] -rw-r--r-- 2 boinc boinc 217677784 Oct 13 08:38 EVNT.46676267._003554.pool.root.1
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:38 boinc_lockfile
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc      2550 Oct 13 08:38 pandaJob.out
[2025-10-13 09:51:30] -rw------- 1 boinc boinc    972849 Oct 13 08:38 agis_schedconf.cvmfs.json
[2025-10-13 09:51:30] -rw------- 1 boinc boinc   1560580 Oct 13 08:38 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:51:30] drwx------ 5 boinc boinc      4096 Oct 13 08:38 pilot3
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc       529 Oct 13 09:50 boinc_task_state.xml
[2025-10-13 09:51:30] -rw------- 1 boinc boinc 195444648 Oct 13 09:50 HITS.46676269._074842.pool.root.1
[2025-10-13 09:51:30] -rw------- 1 boinc boinc      1019 Oct 13 09:50 memory_monitor_summary.json
[2025-10-13 09:51:30] -rw------- 1 boinc boinc        95 Oct 13 09:50 pilot_heartbeat.json
[2025-10-13 09:51:30] -rw------- 1 boinc boinc    255180 Oct 13 09:50 log.46676269._074842.job.log.tgz.1
[2025-10-13 09:51:30] -rw------- 1 boinc boinc      7759 Oct 13 09:50 heartbeat.json
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc      8192 Oct 13 09:51 boinc_mmap_file
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc        27 Oct 13 09:51 wrapper_checkpoint.txt
[2025-10-13 09:51:30] -rw------- 1 boinc boinc      5089 Oct 13 09:51 pilotlog.txt
[2025-10-13 09:51:30] -rw------- 1 boinc boinc    663217 Oct 13 09:51 log.46676269._074842.job.log.1
[2025-10-13 09:51:30] -rw------- 1 boinc boinc       357 Oct 13 09:51 output.list
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc       620 Oct 13 09:51 runtime_log
[2025-10-13 09:51:30] -rw------- 1 boinc boinc    942080 Oct 13 09:51 result.tar.gz
[2025-10-13 09:51:30] -rw------- 1 boinc boinc       655 Oct 13 09:51 yxKODmJ36R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeFjNDmrJqvbn.diag
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc      8826 Oct 13 09:51 runtime_log.err
[2025-10-13 09:51:30] -rw-r--r-- 1 boinc boinc     21984 Oct 13 09:51 stderr.txt
[2025-10-13 09:51:30] HITS file was successfully produced:
[2025-10-13 09:51:30] -rw------- 1 boinc boinc 195444648 Oct 13 09:50 shared/HITS.pool.root.1
[2025-10-13 09:51:30]  *** Contents of shared directory: ***
[2025-10-13 09:51:30] total 404944
[2025-10-13 09:51:30] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:38 start_atlas.sh
[2025-10-13 09:51:30] -rw-r--r-- 2 boinc boinc    569684 Oct 13 08:38 input.tar.gz
[2025-10-13 09:51:30] -rw-r--r-- 2 boinc boinc 217677784 Oct 13 08:38 ATLAS.root_0
[2025-10-13 09:51:30] -rw------- 1 boinc boinc 195444648 Oct 13 09:50 HITS.pool.root.1
[2025-10-13 09:51:30] -rw------- 1 boinc boinc    942080 Oct 13 09:51 result.tar.gz
09:51:31 (2974285): run_atlas exited; CPU time 16845.316877
09:51:31 (2974285): called boinc_finish(0)

</stderr_txt>
]]>

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