Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:58:34 (3390904): wrapper (7.7.26015): starting
06:58:34 (3390904): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 06:58:34] Arguments: --nthreads 3
[2025-10-13 06:58:34] Threads: 3
[2025-10-13 06:58:34] Checking for CVMFS
[2025-10-13 06:58:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:58:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:58:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:58:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:58:35] 2.9.2.0 2127501 4072 81952 151649 0 57 29098791 36864000 0 130560 0 3321982 99.987 265583 1232 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 06:58:35] CVMFS is ok
[2025-10-13 06:58:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:58:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:58:35] Further information can be found at the LHC@home message board.
[2025-10-13 06:58:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:58:35] Checking for apptainer binary...
[2025-10-13 06:58:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:58:35] Running /usr/bin/apptainer --version
[2025-10-13 06:58:35] apptainer version 1.4.1-1.1
[2025-10-13 06:58:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:58:35] thA385
[2025-10-13 06:58:35] apptainer works
[2025-10-13 06:58:35] Set ATHENA_PROC_NUMBER=3
[2025-10-13 06:58:35] Set ATHENA_CORE_NUMBER=3
[2025-10-13 06:58:35] Starting ATLAS job with PandaID=6840537961
[2025-10-13 06:58:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:17:56]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:17:56] 2025-10-13 06:17:45,213 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:17:56] 2025-10-13 06:17:45,213 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:17:56] 2025-10-13 06:17:45,213 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:17:56] 2025-10-13 06:17:45,251 | INFO     | all job control threads have been joined
[2025-10-13 08:17:56] 2025-10-13 06:17:45,511 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:17:56] 2025-10-13 06:17:45,613 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 08:17:56] 2025-10-13 06:17:45,613 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 08:17:56] 2025-10-13 06:17:45,613 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:17:56] 2025-10-13 06:17:45,613 | INFO     | will abort loop
[2025-10-13 08:17:56] 2025-10-13 06:17:46,025 | INFO     | all data control threads have been joined
[2025-10-13 08:17:56] 2025-10-13 06:17:46,218 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:46,219 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:46,257 | INFO     | [job] control thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:46,380 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:46,380 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:46,392 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:17:56] 2025-10-13 06:17:46,440 | INFO     | all payload control threads have been joined
[2025-10-13 08:17:56] 2025-10-13 06:17:46,516 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:46,522 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:17:56] 2025-10-13 06:17:46,619 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:46,848 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:47,031 | INFO     | [data] control thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:47,184 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:47,283 | INFO     | [job] validate thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:47,446 | INFO     | [payload] control thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:47,452 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:47,476 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:47,517 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:50,395 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:17:56] 2025-10-13 06:17:51,120 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140292511332160)>', '<ExcThread(monitor, started 140291885496064)>']
[2025-10-13 08:17:56] 2025-10-13 06:17:51,245 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:17:56] 2025-10-13 06:17:51,246 | INFO     | [monitor] control thread has ended
[2025-10-13 08:17:56] 2025-10-13 06:17:56,144 | INFO     | all workflow threads have been joined
[2025-10-13 08:17:56] 2025-10-13 06:17:56,144 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:17:56] 2025-10-13 06:17:56,145 | INFO     | traces error code: 0
[2025-10-13 08:17:56] 2025-10-13 06:17:56,145 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:17:56] 2025-10-13 06:17:56,195 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:17:56] 2025-10-13 06:17:56,198 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:17:56] 2025-10-13 06:17:56,200 [wrapper] pilotpid: 3394628
[2025-10-13 08:17:56] 2025-10-13 06:17:56,203 [wrapper] Pilot exit status: 0
[2025-10-13 08:17:56] 2025-10-13 06:17:56,211 [wrapper] pandaids: 6840537961
[2025-10-13 08:17:56] 2025-10-13 06:17:56,228 [wrapper] cleanup supervisor_pilot 3413338 3394629
[2025-10-13 08:17:56] 2025-10-13 06:17:56,230 [wrapper] Test setup, not cleaning
[2025-10-13 08:17:56] 2025-10-13 06:17:56,233 [wrapper] apfmon messages muted
[2025-10-13 08:17:56] 2025-10-13 06:17:56,235 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:17:56] 2025-10-13 06:17:56,238 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:17:56]  *** Error codes and diagnostics ***
[2025-10-13 08:17:56]     "exeErrorCode": 0,
[2025-10-13 08:17:56]     "exeErrorDiag": "",
[2025-10-13 08:17:56]     "pilotErrorCode": 0,
[2025-10-13 08:17:56]     "pilotErrorDiag": "",
[2025-10-13 08:17:56]  *** Listing of results directory ***
[2025-10-13 08:17:56] total 404996
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc    557409 Oct 12 20:53 pilot3.tar.gz
[2025-10-13 08:17:56] -rwx------ 1 boinc boinc     36292 Oct 12 20:59 runpilot2-wrapper.sh
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc      5112 Oct 12 20:59 queuedata.json
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc       100 Oct 13 06:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:17:56] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 06:58 run_atlas
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc       105 Oct 13 06:58 job.xml
[2025-10-13 08:17:56] -rw-r--r-- 2 boinc boinc 222763090 Oct 13 06:58 EVNT.46676267._004433.pool.root.1
[2025-10-13 08:17:56] -rw-r--r-- 2 boinc boinc    569674 Oct 13 06:58 input.tar.gz
[2025-10-13 08:17:56] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:58 start_atlas.sh
[2025-10-13 08:17:56] drwxrwx--x 2 boinc boinc      4096 Oct 13 06:58 shared
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:58 boinc_setup_complete
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc      6446 Oct 13 06:58 init_data.xml
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:58 boinc_lockfile
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc      2550 Oct 13 06:58 pandaJob.out
[2025-10-13 08:17:56] -rw------- 1 boinc boinc    974365 Oct 13 06:58 agis_schedconf.cvmfs.json
[2025-10-13 08:17:56] -rw------- 1 boinc boinc   1560580 Oct 13 06:58 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:17:56] drwx------ 5 boinc boinc      4096 Oct 13 06:58 pilot3
[2025-10-13 08:17:56] -rw------- 1 boinc boinc        95 Oct 13 08:17 pilot_heartbeat.json
[2025-10-13 08:17:56] -rw------- 1 boinc boinc 186180499 Oct 13 08:17 HITS.46676269._086833.pool.root.1
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc       529 Oct 13 08:17 boinc_task_state.xml
[2025-10-13 08:17:56] -rw------- 1 boinc boinc      1033 Oct 13 08:17 memory_monitor_summary.json
[2025-10-13 08:17:56] -rw------- 1 boinc boinc    243762 Oct 13 08:17 log.46676269._086833.job.log.tgz.1
[2025-10-13 08:17:56] -rw------- 1 boinc boinc      7749 Oct 13 08:17 heartbeat.json
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc      8192 Oct 13 08:17 boinc_mmap_file
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc        27 Oct 13 08:17 wrapper_checkpoint.txt
[2025-10-13 08:17:56] -rw------- 1 boinc boinc      4742 Oct 13 08:17 pilotlog.txt
[2025-10-13 08:17:56] -rw------- 1 boinc boinc    699416 Oct 13 08:17 log.46676269._086833.job.log.1
[2025-10-13 08:17:56] -rw------- 1 boinc boinc       357 Oct 13 08:17 output.list
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc       620 Oct 13 08:17 runtime_log
[2025-10-13 08:17:56] -rw------- 1 boinc boinc    962560 Oct 13 08:17 result.tar.gz
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc      8777 Oct 13 08:17 runtime_log.err
[2025-10-13 08:17:56] -rw------- 1 boinc boinc       658 Oct 13 08:17 WBdMDmNTGS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4BlNDmFLcWGm.diag
[2025-10-13 08:17:56] -rw-r--r-- 1 boinc boinc      7115 Oct 13 08:17 stderr.txt
[2025-10-13 08:17:56] HITS file was successfully produced:
[2025-10-13 08:17:56] -rw------- 1 boinc boinc 186180499 Oct 13 08:17 shared/HITS.pool.root.1
[2025-10-13 08:17:56]  *** Contents of shared directory: ***
[2025-10-13 08:17:56] total 400888
[2025-10-13 08:17:56] -rw-r--r-- 2 boinc boinc 222763090 Oct 13 06:58 ATLAS.root_0
[2025-10-13 08:17:56] -rw-r--r-- 2 boinc boinc    569674 Oct 13 06:58 input.tar.gz
[2025-10-13 08:17:56] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:58 start_atlas.sh
[2025-10-13 08:17:56] -rw------- 1 boinc boinc 186180499 Oct 13 08:17 HITS.pool.root.1
[2025-10-13 08:17:56] -rw------- 1 boinc boinc    962560 Oct 13 08:17 result.tar.gz
08:17:57 (3390904): run_atlas exited; CPU time 13549.299275
08:17:57 (3390904): called boinc_finish(0)

</stderr_txt>
]]>

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