Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:27:39 (30576): wrapper (7.7.26015): starting
16:27:39 (30576): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 16:27:39] Arguments: --nthreads 12
[2025-10-12 16:27:39] Threads: 12
[2025-10-12 16:27:39] Checking for CVMFS
[2025-10-12 16:27:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:27:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:27:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:27:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:27:40] 2.11.2.0 2913 223361 99880 151636 2 59 15529712 20275200 1 130560 1 109414858 99.984 13346742 12550 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:27:40] CVMFS is ok
[2025-10-12 16:27:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:27:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:27:40] Further information can be found at the LHC@home message board.
[2025-10-12 16:27:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:27:40] Checking for apptainer binary...
[2025-10-12 16:27:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:27:40] Running /usr/bin/apptainer --version
[2025-10-12 16:27:40] apptainer version 1.3.2-1.el7
[2025-10-12 16:27:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:27:41] c-205-6.aglt2.org
[2025-10-12 16:27:41] apptainer works
[2025-10-12 16:27:41] Set ATHENA_PROC_NUMBER=12
[2025-10-12 16:27:41] Set ATHENA_CORE_NUMBER=12
[2025-10-12 16:27:41] Starting ATLAS job with PandaID=6840537953
[2025-10-12 16:27:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:40:11]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:40:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 17:40:11]  replicas=None
[2025-10-12 17:40:11]  scope=mc23_13p6TeV
[2025-10-12 17:40:11]  status=None
[2025-10-12 17:40:11]  status_code=0
[2025-10-12 17:40:11]  storage_token=
[2025-10-12 17:40:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840537953/log.46676269._086825.job.log.tgz.1
[2025-10-12 17:40:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/e8/log.46676269._086825.job.log.tgz.1
[2025-10-12 17:40:11]  workdir=None
[2025-10-12 17:40:11] ]
[2025-10-12 17:40:11] 2025-10-12 21:39:32,249 | INFO     | time since job start (4296s) is within the limit (172800.0s)
[2025-10-12 17:40:11] 2025-10-12 21:39:32,269 | INFO     | transferring file log.46676269._086825.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840537953/log.46676269._086825.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 17:40:11] 2025-10-12 21:39:32,270 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840537953/log.46676269._086825.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._086825.job
[2025-10-12 17:40:11] 2025-10-12 21:39:32,293 | INFO     | adding to output.list: log.46676269._086825.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/e8/log.46676269._086825.job.log.tg
[2025-10-12 17:40:11] 2025-10-12 21:39:32,294 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:40:11] 2025-10-12 21:39:32,294 | INFO     | summary of transferred files:
[2025-10-12 17:40:11] 2025-10-12 21:39:32,294 | INFO     |  -- lfn=log.46676269._086825.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:40:11] 2025-10-12 21:39:32,294 | INFO     | stage-out finished correctly
[2025-10-12 17:40:11] 2025-10-12 21:39:32,378 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:40:11] 2025-10-12 21:39:34,252 | INFO     | time since job start (4298s) is within the limit (172800.0s)
[2025-10-12 17:40:11] 2025-10-12 21:39:34,945 | INFO     | job 6840537953 has state=finished
[2025-10-12 17:40:11] 2025-10-12 21:39:34,945 | INFO     | preparing for final server update for job 6840537953 in state='finished'
[2025-10-12 17:40:11] 2025-10-12 21:39:34,965 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:40:11] 2025-10-12 21:39:34,965 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:40:11] 2025-10-12 21:39:34,966 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:40:11] 2025-10-12 21:39:34,966 | INFO     | job 6840537953 has finished - writing final server update
[2025-10-12 17:40:11] 2025-10-12 21:39:34,966 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:40:11] 2025-10-12 21:39:34,967 | INFO     | executing command: lscpu
[2025-10-12 17:40:11] 2025-10-12 21:39:34,994 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:40:11] 2025-10-12 21:39:35,446 | WARNING  | process 8397 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 17:40:11] 2025-10-12 21:39:35,447 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840537953/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:40:11] 2025-10-12 21:39:35,537 | INFO     | number of running child processes to parent process 8397: 1
[2025-10-12 17:40:11] 2025-10-12 21:39:35,537 | INFO     | maximum number of monitored processes: 6
[2025-10-12 17:40:11] 2025-10-12 21:39:36,257 | INFO     | time since job start (4300s) is within the limit (172800.0s)
[2025-10-12 17:40:11] 2025-10-12 21:39:38,040 | INFO     | monitor loop #321: job 0:6840537953 is in state 'finished'
[2025-10-12 17:40:11] 2025-10-12 21:39:38,040 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:40:11] 2025-10-12 21:39:38,258 | INFO     | time since job start (4302s) is within the limit (172800.0s)
[2025-10-12 17:40:11] 2025-10-12 21:39:39,581 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 17:40:11] 2025-10-12 21:39:39,584 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 17:40:11] 2025-10-12 21:39:39,587 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840537953/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:40:11] 2025-10-12 21:39:39,588 | INFO     | extracted standard info from prmon json
[2025-10-12 17:40:11] 2025-10-12 21:39:39,588 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:40:11] 2025-10-12 21:39:39,588 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:40:11] 2025-10-12 21:39:39,589 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:40:11] 2025-10-12 21:39:39,589 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:40:11] 2025-10-12 21:39:39,590 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:40:11] 2025-10-12 21:39:39,590 | INFO     | sum of square deviations: 77515872.0
[2025-10-12 17:40:11] 2025-10-12 21:39:39,591 | INFO     | sum of deviations: -7111319061.0
[2025-10-12 17:40:11] 2025-10-12 21:39:39,591 | INFO     | mean x: 1760303101.0
[2025-10-12 17:40:11] 2025-10-12 21:39:39,591 | INFO     | mean y: 2861115.777777778
[2025-10-12 17:40:11] 2025-10-12 21:39:39,591 | INFO     | -- intersect: 161493361993.82645
[2025-10-12 17:40:11] 2025-10-12 21:39:39,591 | INFO     | intersect: 161493361993.82645
[2025-10-12 17:40:11] 2025-10-12 21:39:39,591 | INFO     | chi2: 0.06060167002740234
[2025-10-12 17:40:11] 2025-10-12 21:39:39,591 | INFO     | -- intersect: 161493361993.82645
[2025-10-12 17:40:11] 2025-10-12 21:39:39,592 | INFO     | current memory leak: -91.74 B/s (using 63 data points, chi2=0.06)
[2025-10-12 17:40:11] 2025-10-12 21:39:39,592 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-10-12 17:40:11] 2025-10-12 21:39:39,592 | INFO     | ..............................
[2025-10-12 17:40:11] 2025-10-12 21:39:39,592 | INFO     | . Timing measurements:
[2025-10-12 17:40:11] 2025-10-12 21:39:39,592 | INFO     | . get job = 0 s
[2025-10-12 17:40:11] 2025-10-12 21:39:39,592 | INFO     | . initial setup = 2 s
[2025-10-12 17:40:11] 2025-10-12 21:39:39,592 | INFO     | . payload setup = 6 s
[2025-10-12 17:40:11] 2025-10-12 21:39:39,593 | INFO     | . stage-in = 0 s
[2025-10-12 17:40:11] 2025-10-12 21:39:39,593 | INFO     | . payload execution = 4267 s
[2025-10-12 17:40:11] 2025-10-12 21:39:39,593 | INFO     | . stage-out = 0 s
[2025-10-12 17:40:11] 2025-10-12 21:39:39,593 | INFO     | . log creation = 0 s
[2025-10-12 17:40:11] 2025-10-12 21:39:39,593 | INFO     | ..............................
[2025-10-12 17:40:11] 2025-10-12 21:39:39,933 | INFO     | 
[2025-10-12 17:40:11] 2025-10-12 21:39:39,933 | INFO     | job summary report
[2025-10-12 17:40:11] 2025-10-12 21:39:39,933 | INFO     | --------------------------------------------------
[2025-10-12 17:40:11] 2025-10-12 21:39:39,933 | INFO     | PanDA job id: 6840537953
[2025-10-12 17:40:11] 2025-10-12 21:39:39,933 | INFO     | task id: 46676269
[2025-10-12 17:40:11] 2025-10-12 21:39:39,934 | INFO     | errors: (none)
[2025-10-12 17:40:11] 2025-10-12 21:39:39,934 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:40:11] 2025-10-12 21:39:39,934 | INFO     | pilot state: finished 
[2025-10-12 17:40:11] 2025-10-12 21:39:39,934 | INFO     | transexitcode: 0
[2025-10-12 17:40:11] 2025-10-12 21:39:39,934 | INFO     | exeerrorcode: 0
[2025-10-12 17:40:11] 2025-10-12 21:39:39,934 | INFO     | exeerrordiag: 
[2025-10-12 17:40:11] 2025-10-12 21:39:39,935 | INFO     | exitcode: 0
[2025-10-12 17:40:11] 2025-10-12 21:39:39,935 | INFO     | exitmsg: OK
[2025-10-12 17:40:11] 2025-10-12 21:39:39,935 | INFO     | cpuconsumptiontime: 46842 s
[2025-10-12 17:40:11] 2025-10-12 21:39:39,935 | INFO     | nevents: 400
[2025-10-12 17:40:11] 2025-10-12 21:39:39,935 | INFO     | neventsw: 0
[2025-10-12 17:40:11] 2025-10-12 21:39:39,935 | INFO     | pid: 8397
[2025-10-12 17:40:11] 2025-10-12 21:39:39,935 | INFO     | pgrp: 8397
[2025-10-12 17:40:11] 2025-10-12 21:39:39,936 | INFO     | corecount: 12
[2025-10-12 17:40:11] 2025-10-12 21:39:39,936 | INFO     | event service: False
[2025-10-12 17:40:11] 2025-10-12 21:39:39,936 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4277: 2375194, 4279: 2384192, 4280: 2384248, 4287: 2384570}
[2025-10-12 17:40:11] 2025-10-12 21:39:39,936 | INFO     | --------------------------------------------------
[2025-10-12 17:40:11] 2025-10-12 21:39:39,936 | INFO     | 
[2025-10-12 17:40:11] 2025-10-12 21:39:39,936 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 17:40:11] 2025-10-12 21:39:39,960 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,985 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,985 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,986 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,986 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,986 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,986 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,986 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,986 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,987 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,987 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,987 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,987 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,987 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,988 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,988 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,988 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,988 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:40:11] 2025-10-12 21:39:39,988 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,988 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:40:11] 2025-10-12 21:39:39,989 | INFO     | job 6840537953 has completed (purged errors)
[2025-10-12 17:40:11] 2025-10-12 21:39:39,989 | INFO     | overall cleanup function is called
[2025-10-12 17:40:11] 2025-10-12 21:39:40,996 | INFO     | --- collectZombieJob: --- 10, [8397]
[2025-10-12 17:40:11] 2025-10-12 21:39:40,996 | INFO     | zombie collector waiting for pid 8397
[2025-10-12 17:40:11] 2025-10-12 21:39:40,997 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:40:11] 2025-10-12 21:39:40,997 | INFO     | collected zombie processes
[2025-10-12 17:40:11] 2025-10-12 21:39:40,997 | INFO     | will attempt to kill all subprocesses of pid=8397
[2025-10-12 17:40:11] 2025-10-12 21:39:41,091 | INFO     | process IDs to be killed: [8397] (in reverse order)
[2025-10-12 17:40:11] 2025-10-12 21:39:41,142 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:40:11] 2025-10-12 21:39:41,142 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:40:11] 2025-10-12 21:39:41,146 | INFO     | did not find any defunct processes belonging to 8397
[2025-10-12 17:40:11] 2025-10-12 21:39:41,149 | INFO     | did not find any defunct processes belonging to 8397
[2025-10-12 17:40:11] 2025-10-12 21:39:41,149 | INFO     | ready for new job
[2025-10-12 17:40:11] 2025-10-12 21:39:41,150 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:40:11] 2025-10-12 21:39:41,151 | INFO     | ***************************************
[2025-10-12 17:40:11] 2025-10-12 21:39:41,151 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:40:11] 2025-10-12 21:39:41,151 | INFO     | ***************************************
[2025-10-12 17:40:11] 2025-10-12 21:39:41,151 | INFO     | 
[2025-10-12 17:40:11] 2025-10-12 21:39:41,151 | INFO     | architecture information:
[2025-10-12 17:40:11] 2025-10-12 21:39:41,152 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:40:11] 2025-10-12 21:39:41,166 | INFO     | cat /etc/os-release:
[2025-10-12 17:40:11] NAME="CentOS Linux"
[2025-10-12 17:40:11] VERSION="7 (Core)"
[2025-10-12 17:40:11] ID="centos"
[2025-10-12 17:40:11] ID_LIKE="rhel fedora"
[2025-10-12 17:40:11] VERSION_ID="7"
[2025-10-12 17:40:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:40:11] ANSI_COLOR="0;31"
[2025-10-12 17:40:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:40:11] HOME_URL="https://www.centos.org/"
[2025-10-12 17:40:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:40:11] 
[2025-10-12 17:40:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:40:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:40:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:40:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:40:11] 
[2025-10-12 17:40:11] 2025-10-12 21:39:41,166 | INFO     | ***************************************
[2025-10-12 17:40:11] 2025-10-12 21:39:41,669 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 17:40:11] 2025-10-12 21:39:41,685 | INFO     | sufficient remaining disk space (29366419456 B)
[2025-10-12 17:40:11] 2025-10-12 21:39:41,685 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:40:11] 2025-10-12 21:39:41,685 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:40:11] 2025-10-12 21:39:41,685 | INFO     | update_server=False
[2025-10-12 17:40:11] 2025-10-12 21:39:41,685 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:40:11] 2025-10-12 21:39:41,686 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:40:11] 2025-10-12 21:39:41,686 | INFO     | aborting loop
[2025-10-12 17:40:11] 2025-10-12 21:39:42,573 | INFO     | all payload control threads have been joined
[2025-10-12 17:40:11] 2025-10-12 21:39:42,588 | INFO     | all job control threads have been joined
[2025-10-12 17:40:11] 2025-10-12 21:39:42,691 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:42,691 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:42,735 | INFO     | [job] validate thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:42,766 | INFO     | all data control threads have been joined
[2025-10-12 17:40:11] 2025-10-12 21:39:42,819 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:42,828 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:42,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:40:11] 2025-10-12 21:39:42,966 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:40:11] 2025-10-12 21:39:43,061 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:43,313 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:43,433 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:43,578 | INFO     | [payload] control thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:43,593 | INFO     | [job] control thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:43,684 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:43,771 | INFO     | [data] control thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:43,955 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:44,684 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:40:11] 2025-10-12 21:39:44,897 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:45,689 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:39:46,968 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:40:11] 2025-10-12 21:40:02,854 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:40:11] 2025-10-12 21:40:04,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140152263829312)>', '<ExcThread(monitor, started 140152044881664)>']
[2025-10-12 17:40:11] 2025-10-12 21:40:09,183 | INFO     | all workflow threads have been joined
[2025-10-12 17:40:11] 2025-10-12 21:40:09,183 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:40:11] 2025-10-12 21:40:09,183 | INFO     | traces error code: 0
[2025-10-12 17:40:11] 2025-10-12 21:40:09,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:40:11] 2025-10-12 21:40:11,454 | INFO     | PID=1877 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 17:40:11] 2025-10-12 21:40:11,455 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:40:11] 2025-10-12 21:40:11,455 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:40:11] 2025-10-12 21:40:11,455 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:40:11] 2025-10-12 21:40:11,455 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:40:11] 2025-10-12 21:40:11,456 | INFO     | [monitor] control thread has ended
[2025-10-12 17:40:11] 2025-10-12 21:40:11,541 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:40:11] 2025-10-12 21:40:11,544 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:40:11] 2025-10-12 21:40:11,548 [wrapper] pilotpid: 1877
[2025-10-12 17:40:11] 2025-10-12 21:40:11,551 [wrapper] Pilot exit status: 0
[2025-10-12 17:40:11] 2025-10-12 21:40:11,566 [wrapper] pandaids: 6840537953
[2025-10-12 17:40:11] 2025-10-12 21:40:11,606 [wrapper] cleanup supervisor_pilot 13724 1878
[2025-10-12 17:40:11] 2025-10-12 21:40:11,610 [wrapper] Test setup, not cleaning
[2025-10-12 17:40:11] 2025-10-12 21:40:11,614 [wrapper] apfmon messages muted
[2025-10-12 17:40:11] 2025-10-12 21:40:11,617 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:40:11] 2025-10-12 21:40:11,621 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:40:11]  *** Error codes and diagnostics ***
[2025-10-12 17:40:11]     "exeErrorCode": 0,
[2025-10-12 17:40:11]     "exeErrorDiag": "",
[2025-10-12 17:40:11]     "pilotErrorCode": 0,
[2025-10-12 17:40:11]     "pilotErrorDiag": "",
[2025-10-12 17:40:11]  *** Listing of results directory ***
[2025-10-12 17:40:11] total 410188
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 14:53 pilot3.tar.gz
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 14:58 queuedata.json
[2025-10-12 17:40:11] -rwx------ 1 boincer umatlas     36292 Oct 12 14:59 runpilot2-wrapper.sh
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas       100 Oct 12 16:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:40:11] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 16:27 run_atlas
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas       105 Oct 12 16:27 job.xml
[2025-10-12 17:40:11] -rw-r--r-- 2 boincer umatlas 220604350 Oct 12 16:27 EVNT.46676267._004432.pool.root.1
[2025-10-12 17:40:11] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 16:27 start_atlas.sh
[2025-10-12 17:40:11] drwxrwx--x 2 boincer umatlas      4096 Oct 12 16:27 shared
[2025-10-12 17:40:11] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 16:27 input.tar.gz
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas         0 Oct 12 16:27 boinc_lockfile
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 16:27 pandaJob.out
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas    975536 Oct 12 16:27 agis_schedconf.cvmfs.json
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas   1560580 Oct 12 16:27 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:40:11] drwx------ 5 boincer umatlas      4096 Oct 12 16:27 pilot3
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas      5951 Oct 12 17:31 init_data.xml
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas 193483800 Oct 12 17:38 HITS.46676269._086825.pool.root.1
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas       529 Oct 12 17:39 boinc_task_state.xml
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas      1049 Oct 12 17:39 memory_monitor_summary.json
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas    394808 Oct 12 17:39 log.46676269._086825.job.log.tgz.1
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas      7855 Oct 12 17:39 heartbeat.json
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas        27 Oct 12 17:39 wrapper_checkpoint.txt
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 17:39 boinc_mmap_file
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas        95 Oct 12 17:40 pilot_heartbeat.json
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas       744 Oct 12 17:40 pilotlog.txt
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas    626364 Oct 12 17:40 log.46676269._086825.job.log.1
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas       357 Oct 12 17:40 output.list
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas       620 Oct 12 17:40 runtime_log
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas   1044480 Oct 12 17:40 result.tar.gz
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas       658 Oct 12 17:40 wSBNDm0SGS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmejUMDmWhKGvn.diag
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 17:40 runtime_log.err
[2025-10-12 17:40:11] -rw-r--r-- 1 boincer umatlas     21851 Oct 12 17:40 stderr.txt
[2025-10-12 17:40:11] HITS file was successfully produced:
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas 193483800 Oct 12 17:38 shared/HITS.pool.root.1
[2025-10-12 17:40:11]  *** Contents of shared directory: ***
[2025-10-12 17:40:11] total 405988
[2025-10-12 17:40:11] -rw-r--r-- 2 boincer umatlas 220604350 Oct 12 16:27 ATLAS.root_0
[2025-10-12 17:40:11] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 16:27 start_atlas.sh
[2025-10-12 17:40:11] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 16:27 input.tar.gz
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas 193483800 Oct 12 17:38 HITS.pool.root.1
[2025-10-12 17:40:11] -rw------- 1 boincer umatlas   1044480 Oct 12 17:40 result.tar.gz
17:40:13 (30576): run_atlas exited; CPU time 46812.180979
17:40:13 (30576): called boinc_finish(0)

</stderr_txt>
]]>

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