Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 07:45:46 (37812): vboxwrapper version 26210
2025-10-13 07:45:46 (37812): BOINC client version: 8.2.4
2025-10-13 07:45:46 (37812): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-13 07:45:47 (37812): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 07:45:47 (37812): Create VM. (boinc_4753eeaf7d20df16, slot#2)
2025-10-13 07:45:48 (37812): Setting Memory Size for VM. (4800MB)
2025-10-13 07:45:48 (37812): Setting CPU Count for VM. (8)
2025-10-13 07:45:48 (37812): Setting Chipset Options for VM.
2025-10-13 07:45:48 (37812): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 07:45:49 (37812): Setting Boot Options for VM.
2025-10-13 07:45:49 (37812): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 07:45:50 (37812): Enabling VM Network Access.
2025-10-13 07:45:50 (37812): Disabling USB Support for VM.
2025-10-13 07:45:50 (37812): Disabling COM Port Support for VM.
2025-10-13 07:45:51 (37812): Disabling LPT Port Support for VM.
2025-10-13 07:45:51 (37812): Disabling Audio Support for VM.
2025-10-13 07:45:51 (37812): Disabling Clipboard Support for VM.
2025-10-13 07:45:52 (37812): Disabling Drag and Drop Support for VM.
2025-10-13 07:45:52 (37812): Adding storage controller(s) to VM.
2025-10-13 07:45:52 (37812): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 07:45:53 (37812): Adding VirtualBox Guest Additions to VM.
2025-10-13 07:45:53 (37812): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 07:45:53 (37812): forwarding host port 58419 to guest port 80
2025-10-13 07:45:54 (37812): Enabling remote desktop for VM.
2025-10-13 07:45:54 (37812): Required extension pack not installed, remote desktop not enabled.
2025-10-13 07:45:54 (37812): Enabling shared directory for VM.
2025-10-13 07:45:55 (37812): Starting VM using VBoxManage interface. (boinc_4753eeaf7d20df16, slot#2)
2025-10-13 07:46:03 (37812): Successfully started VM. (PID = '11820')
2025-10-13 07:46:03 (37812): Reporting VM Process ID to BOINC.
2025-10-13 07:46:03 (37812): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-13 07:46:03 (37812): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 07:46:03 (37812): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 07:46:03 (37812): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 07:46:03 (37812): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 07:46:03 (37812): Detected: Web Application Enabled (http://localhost:58419)
2025-10-13 07:46:03 (37812): Preference change detected
2025-10-13 07:46:03 (37812): Setting CPU throttle for VM. (80%)
2025-10-13 07:46:03 (37812): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 07:46:05 (37812): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 07:46:05 (37812): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 07:46:09 (37812): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 07:46:09 (37812): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 07:46:09 (37812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 07:46:14 (37812): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 07:46:14 (37812): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 07:46:21 (37812): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 07:46:21 (37812): Guest Log: 00:00:00.000175 main     Log opened 2025-10-13T07:46:20.405876000Z
2025-10-13 07:46:21 (37812): Guest Log: 00:00:00.000330 main     OS Product: Linux
2025-10-13 07:46:21 (37812): Guest Log: 00:00:00.000366 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 07:46:21 (37812): Guest Log: 00:00:00.000392 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 07:46:21 (37812): Guest Log: 00:00:00.000438 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 07:46:21 (37812): Guest Log: 00:00:00.000439 main     Process ID: 1373
2025-10-13 07:46:21 (37812): Guest Log: 00:00:00.000440 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 07:46:21 (37812): Guest Log: 00:00:00.001176 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 07:46:22 (37812): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 07:46:22 (37812): Guest Log: [INFO] Mounting shared directory
2025-10-13 07:46:22 (37812): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 07:46:28 (37812): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 07:46:28 (37812): Guest Log: [INFO] Detected branch: prod
2025-10-13 07:46:28 (37812): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 07:46:28 (37812): Guest Log: Copying input files
2025-10-13 07:46:28 (37812): Guest Log: Copied input files into RunAtlas.
2025-10-13 07:46:28 (37812): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 07:46:28 (37812): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 07:46:28 (37812): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 07:46:28 (37812): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 07:46:32 (37812): Guest Log: 00:00:10.015009 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 388 544 969 000ns (GuestNow=1 760 309 191 863 846 000 ns GuestLast=1 760 341 580 408 815 000 ns fSetTimeLastLoop=true )
2025-10-13 07:46:59 (37812): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 07:47:00 (37812): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 07:47:00 (37812): Guest Log: 2.6.3.0 1649 0 30140 151640 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 07:47:02 (37812): Guest Log: copied the webapp to /var/www
2025-10-13 07:47:02 (37812): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-13 07:47:02 (37812): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-13 07:47:02 (37812): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 07:47:02 (37812): Guest Log:  *** Starting ATLAS job. (PandaID=6840428621 taskID=46676269) ***
2025-10-13 09:30:01 (37812): Status Report: Elapsed Time: '6000.393154'
2025-10-13 09:30:01 (37812): Status Report: CPU Time: '32640.312500'
2025-10-13 09:35:42 (37812): Guest Log:  *** Job finished ***
2025-10-13 09:35:42 (37812): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:22,183 | INFO     | all workflow threads have been joined
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:22,183 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:22,184 | INFO     | traces error code: 0
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:22,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,090 | INFO     | PID=6079 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,091 | INFO     | found 0 job(s) in 20 queues
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,091 | INFO     | [monitor] control thread has ended
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,262 [wrapper] ==== pilot stdout END ====
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,267 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,271 [wrapper] pilotpid: 6079
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,275 [wrapper] Pilot exit status: 0
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,352 [wrapper] pandaids: 6840428621
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,383 [wrapper] cleanup supervisor_pilot  3531 6080
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,389 [wrapper] Test setup, not cleaning
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,395 [wrapper] apfmon messages muted
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,400 [wrapper] ==== wrapper stdout END ====
2025-10-13 09:35:42 (37812): Guest Log: 2025-10-13 00:35:38,405 [wrapper] ==== wrapper stderr END ====
2025-10-13 09:35:42 (37812): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 09:35:42 (37812): Guest Log:     "exeErrorCode": 0,
2025-10-13 09:35:42 (37812): Guest Log:     "exeErrorDiag": "",
2025-10-13 09:35:42 (37812): Guest Log:     "pilotErrorCode": 0,
2025-10-13 09:35:42 (37812): Guest Log:     "pilotErrorDiag": "",
2025-10-13 09:35:42 (37812): Guest Log:  *** Listing of results directory ***
2025-10-13 09:35:42 (37812): Guest Log: total 198964
2025-10-13 09:35:42 (37812): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 16:49 pilot3.tar.gz
2025-10-13 09:35:42 (37812): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 16:57 queuedata.json
2025-10-13 09:35:42 (37812): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 16:57 runpilot2-wrapper.sh
2025-10-13 09:35:42 (37812): Guest Log: -rwxr-xr-x. 1 atlas atlas      8843 Oct 12 22:46 init_data.xml
2025-10-13 09:35:42 (37812): Guest Log: -rwxr-xr-x. 1 atlas atlas    569682 Oct 12 22:46 input.tar.gz
2025-10-13 09:35:42 (37812): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 22:46 start_atlas.sh
2025-10-13 09:35:42 (37812): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 22:46 EVNT.46676267._004793.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 09:35:42 (37812): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 12 22:47 pandaJob.out
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas    975603 Oct 12 22:47 agis_schedconf.cvmfs.json
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 22:48 agis_ddmendpoints.agis.ALL.json
2025-10-13 09:35:42 (37812): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 22:48 pilot3
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas 197446448 Oct 13 00:34 HITS.46676269._084223.pool.root.1
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas      1034 Oct 13 00:34 memory_monitor_summary.json
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas    374403 Oct 13 00:34 log.46676269._084223.job.log.tgz.1
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas      7832 Oct 13 00:35 heartbeat.json
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 00:35 pilot_heartbeat.json
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas       744 Oct 13 00:35 pilotlog.txt
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas    859256 Oct 13 00:35 log.46676269._084223.job.log.1
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 00:35 output.list
2025-10-13 09:35:42 (37812): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 00:35 runtime_log
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas   1249280 Oct 13 00:35 result.tar.gz
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas       668 Oct 13 00:35 salNDmSZES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6kkNDmj7TbRn.diag
2025-10-13 09:35:42 (37812): Guest Log: -rw-r--r--. 1 atlas atlas      8675 Oct 13 00:35 runtime_log.err
2025-10-13 09:35:42 (37812): Guest Log: Looking for outputfile HITS.46676269._084223.pool.root.1
2025-10-13 09:35:42 (37812): Guest Log: HITS file was successfully produced
2025-10-13 09:35:42 (37812): Guest Log: -rw-------. 1 atlas atlas 197446448 Oct 13 00:34 /home/atlas/RunAtlas/HITS.46676269._084223.pool.root.1
2025-10-13 09:35:44 (37812): Guest Log: Successfully finished the ATLAS job!
2025-10-13 09:35:44 (37812): Guest Log: Copying the results back to the shared directory!
2025-10-13 09:35:44 (37812): Guest Log:  *** Contents of shared directory: ***
2025-10-13 09:35:44 (37812): Guest Log: total 410352
2025-10-13 09:35:44 (37812): Guest Log: -rwxrwxrwx. 1 root root 220900059 Oct 12 22:45 ATLAS.root_0
2025-10-13 09:35:44 (37812): Guest Log: -rwxrwxrwx. 1 root root 197446448 Oct 13 00:35 HITS.pool.root.1
2025-10-13 09:35:44 (37812): Guest Log: -rwxrwxrwx. 1 root root      8843 Oct 12 22:45 init_data.xml
2025-10-13 09:35:44 (37812): Guest Log: -rwxrwxrwx. 1 root root    569682 Oct 12 20:29 input.tar.gz
2025-10-13 09:35:44 (37812): Guest Log: -rwxrwxrwx. 1 root root   1249280 Oct 13 00:35 result.tar.gz
2025-10-13 09:35:44 (37812): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 20:29 start_atlas.sh
2025-10-13 09:35:44 (37812): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 09:35:44 (37812): VM Completion File Detected.
2025-10-13 09:35:44 (37812): Powering off VM.
2025-10-13 09:35:44 (37812): Successfully stopped VM.
2025-10-13 09:35:44 (37812): Deregistering VM. (boinc_4753eeaf7d20df16, slot#2)
2025-10-13 09:35:44 (37812): Removing network bandwidth throttle group from VM.
2025-10-13 09:35:45 (37812): Removing VM from VirtualBox.
2025-10-13 09:35:50 (37812): called boinc_finish(0)

</stderr_txt>
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