Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:16:48 (852115): wrapper (7.7.26015): starting
16:16:48 (852115): wrapper: running run_atlas (--nthreads 11)
[2025-10-12 16:16:48] Arguments: --nthreads 11
[2025-10-12 16:16:48] Threads: 11
[2025-10-12 16:16:48] Checking for CVMFS
[2025-10-12 16:16:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:16:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:16:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:16:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:16:49] 2.13.2.0 112940 138580 390244 151636 3 110 29469598 40960000 54456 16776704 0 421123817 99.823 197859191 31264 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 16:16:49] CVMFS is ok
[2025-10-12 16:16:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:16:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:16:49] Further information can be found at the LHC@home message board.
[2025-10-12 16:16:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:16:49] Checking for apptainer binary...
[2025-10-12 16:16:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:16:49] Running /usr/bin/apptainer --version
[2025-10-12 16:16:49] apptainer version 1.4.3-1.el9
[2025-10-12 16:16:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:16:49] c8-7-3.aglt2.org
[2025-10-12 16:16:49] apptainer works
[2025-10-12 16:16:50] Set ATHENA_PROC_NUMBER=11
[2025-10-12 16:16:50] Set ATHENA_CORE_NUMBER=11
[2025-10-12 16:16:50] Starting ATLAS job with PandaID=6840537444
[2025-10-12 16:16:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:48:18]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:48:18] 2025-10-12 21:38:51,317 | INFO     | .. there are 57 such processes running
[2025-10-12 17:48:18] 2025-10-12 21:38:52,323 | INFO     | time since job start (4859s) is within the limit (172800.0s)
[2025-10-12 17:48:18] 2025-10-12 21:38:52,955 | INFO     | monitor loop #310: job 0:6840537444 is in state 'finished'
[2025-10-12 17:48:18] 2025-10-12 21:38:52,955 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:48:18] 2025-10-12 21:38:54,333 | INFO     | time since job start (4861s) is within the limit (172800.0s)
[2025-10-12 17:48:18] 2025-10-12 21:38:55,460 | INFO     | monitor loop #311: job 0:6840537444 is in state 'finished'
[2025-10-12 17:48:18] 2025-10-12 21:38:55,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:48:18] 2025-10-12 21:38:56,342 | INFO     | time since job start (4863s) is within the limit (172800.0s)
[2025-10-12 17:48:18] 2025-10-12 21:38:57,984 | INFO     | monitor loop #312: job 0:6840537444 is in state 'finished'
[2025-10-12 17:48:18] 2025-10-12 21:38:57,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:48:18] 2025-10-12 21:38:58,349 | INFO     | time since job start (4865s) is within the limit (172800.0s)
[2025-10-12 17:48:18] 2025-10-12 21:39:00,359 | INFO     | time since job start (4867s) is within the limit (172800.0s)
[2025-10-12 17:48:18] 2025-10-12 21:39:00,495 | INFO     | monitor loop #313: job 0:6840537444 is in state 'finished'
[2025-10-12 17:48:18] 2025-10-12 21:39:00,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:48:18] 2025-10-12 21:39:02,374 | INFO     | time since job start (4869s) is within the limit (172800.0s)
[2025-10-12 17:48:18] 2025-10-12 21:39:03,001 | INFO     | monitor loop #314: job 0:6840537444 is in state 'finished'
[2025-10-12 17:48:18] 2025-10-12 21:39:03,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:48:18] 2025-10-12 21:39:04,381 | INFO     | time since job start (4871s) is within the limit (172800.0s)
[2025-10-12 17:48:18] 2025-10-12 21:39:05,506 | INFO     | monitor loop #315: job 0:6840537444 is in state 'finished'
[2025-10-12 17:48:18] 2025-10-12 21:39:05,515 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:48:18] 2025-10-12 21:39:06,403 | INFO     | time since job start (4873s) is within the limit (172800.0s)
[2025-10-12 17:48:18] 2025-10-12 21:39:08,033 | INFO     | monitor loop #316: job 0:6840537444 is in state 'finished'
[2025-10-12 17:48:18] 2025-10-12 21:39:08,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:48:18] 2025-10-12 21:39:08,438 | INFO     | time since job start (4875s) is within the limit (172800.0s)
[2025-10-12 17:48:18] 2025-10-12 21:39:10,444 | INFO     | time since job start (4877s) is within the limit (172800.0s)
[2025-10-12 17:48:18] 2025-10-12 21:39:10,569 | INFO     | monitor loop #317: job 0:6840537444 is in state 'finished'
[2025-10-12 17:48:18] 2025-10-12 21:39:10,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:48:18] 2025-10-12 21:39:12,454 | INFO     | time since job start (4879s) is within the limit (172800.0s)
[2025-10-12 17:48:18] 2025-10-12 21:39:13,074 | INFO     | monitor loop #318: job 0:6840537444 is in state 'finished'
[2025-10-12 17:48:18] 2025-10-12 21:39:13,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:48:18] 2025-10-12 21:39:15,606 | INFO     | monitor loop #319: job 0:6840537444 is in state 'finished'
[2025-10-12 17:48:18] 2025-10-12 21:39:15,606 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:48:18] 2025-10-12 21:39:16,346 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 17:48:18] 2025-10-12 21:39:16,365 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.992320312502
[2025-10-12 17:48:18] 2025-10-12 21:39:16,412 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6840537444/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:48:18] 2025-10-12 21:39:16,412 | INFO     | extracted standard info from prmon json
[2025-10-12 17:48:18] 2025-10-12 21:39:16,412 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:48:18] 2025-10-12 21:39:16,412 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:48:18] 2025-10-12 21:39:16,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:48:18] 2025-10-12 21:39:16,428 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:48:18] 2025-10-12 21:39:16,431 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:48:18] 2025-10-12 21:39:16,432 | INFO     | sum of square deviations: 106330794.07142861
[2025-10-12 17:48:18] 2025-10-12 21:39:16,432 | INFO     | sum of deviations: -3354964242.285715
[2025-10-12 17:48:18] 2025-10-12 21:39:16,432 | INFO     | mean x: 1760302835.642857
[2025-10-12 17:48:18] 2025-10-12 21:39:16,432 | INFO     | mean y: 2547320.8285714285
[2025-10-12 17:48:18] 2025-10-12 21:39:16,432 | INFO     | -- intersect: 55543871174.84489
[2025-10-12 17:48:18] 2025-10-12 21:39:16,432 | INFO     | intersect: 55543871174.84489
[2025-10-12 17:48:18] 2025-10-12 21:39:16,432 | INFO     | chi2: 0.17971873371220334
[2025-10-12 17:48:18] 2025-10-12 21:39:16,433 | INFO     | -- intersect: 55543871174.84489
[2025-10-12 17:48:18] 2025-10-12 21:39:16,433 | INFO     | current memory leak: -31.55 B/s (using 70 data points, chi2=0.18)
[2025-10-12 17:48:18] 2025-10-12 21:39:16,434 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-12 17:48:18] 2025-10-12 21:39:16,434 | INFO     | ..............................
[2025-10-12 17:48:18] 2025-10-12 21:39:16,434 | INFO     | . Timing measurements:
[2025-10-12 17:48:18] 2025-10-12 21:39:16,434 | INFO     | . get job = 0 s
[2025-10-12 17:48:18] 2025-10-12 21:39:16,434 | INFO     | . initial setup = 8 s
[2025-10-12 17:48:18] 2025-10-12 21:39:16,434 | INFO     | . payload setup = 51 s
[2025-10-12 17:48:18] 2025-10-12 21:39:16,434 | INFO     | . stage-in = 0 s
[2025-10-12 17:48:18] 2025-10-12 21:39:16,434 | INFO     | . payload execution = 4711 s
[2025-10-12 17:48:18] 2025-10-12 21:39:16,434 | INFO     | . stage-out = 3 s
[2025-10-12 17:48:18] 2025-10-12 21:39:16,436 | INFO     | . log creation = 0 s
[2025-10-12 17:48:18] 2025-10-12 21:39:16,436 | INFO     | ..............................
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | 
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | job summary report
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | --------------------------------------------------
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | PanDA job id: 6840537444
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | task id: 46676269
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | errors: (none)
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | pilot state: finished 
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | transexitcode: 0
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | exeerrorcode: 0
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | exeerrordiag: 
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | exitcode: 0
[2025-10-12 17:48:18] 2025-10-12 21:39:16,756 | INFO     | exitmsg: OK
[2025-10-12 17:48:18] 2025-10-12 21:39:16,757 | INFO     | cpuconsumptiontime: 23164 s
[2025-10-12 17:48:18] 2025-10-12 21:39:16,757 | INFO     | nevents: 400
[2025-10-12 17:48:18] 2025-10-12 21:39:16,757 | INFO     | neventsw: 0
[2025-10-12 17:48:18] 2025-10-12 21:39:16,757 | INFO     | pid: 891671
[2025-10-12 17:48:18] 2025-10-12 21:39:16,757 | INFO     | pgrp: 891671
[2025-10-12 17:48:18] 2025-10-12 21:39:16,757 | INFO     | corecount: 11
[2025-10-12 17:48:18] 2025-10-12 21:39:16,757 | INFO     | event service: False
[2025-10-12 17:48:18] 2025-10-12 21:39:16,757 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 22: 2348913, 30: 2349203, 33: 2349231, 4764: 2375521, 4769: 2384519, 4771: 2384575, 4818: 2384769}
[2025-10-12 17:48:18] 2025-10-12 21:39:16,757 | INFO     | --------------------------------------------------
[2025-10-12 17:48:18] 2025-10-12 21:39:16,764 | INFO     | 
[2025-10-12 17:48:18] 2025-10-12 21:39:16,764 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 17:48:18] 2025-10-12 21:39:16,879 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,879 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,879 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,879 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,879 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,879 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,879 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | job 6840537444 has completed (purged errors)
[2025-10-12 17:48:18] 2025-10-12 21:39:16,880 | INFO     | overall cleanup function is called
[2025-10-12 17:48:18] 2025-10-12 21:39:17,182 | INFO     | PID=860120 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 17:48:18] 2025-10-12 21:39:17,182 | INFO     | .. there are 57 such processes running
[2025-10-12 17:48:18] 2025-10-12 21:39:17,906 | INFO     | --- collectZombieJob: --- 10, [891671]
[2025-10-12 17:48:18] 2025-10-12 21:39:17,906 | INFO     | zombie collector waiting for pid 891671
[2025-10-12 17:48:18] 2025-10-12 21:39:17,906 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:48:18] 2025-10-12 21:39:17,906 | INFO     | collected zombie processes
[2025-10-12 17:48:18] 2025-10-12 21:39:17,906 | INFO     | will attempt to kill all subprocesses of pid=891671
[2025-10-12 17:48:18] 2025-10-12 21:39:21,365 | INFO     | process IDs to be killed: [891671] (in reverse order)
[2025-10-12 17:48:18] 2025-10-12 21:39:22,135 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:48:18] 2025-10-12 21:39:22,135 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:48:18] 2025-10-12 21:39:22,165 | INFO     | did not find any defunct processes belonging to 891671
[2025-10-12 17:48:18] 2025-10-12 21:39:22,208 | INFO     | did not find any defunct processes belonging to 891671
[2025-10-12 17:48:18] 2025-10-12 21:39:22,208 | INFO     | ready for new job
[2025-10-12 17:48:18] 2025-10-12 21:39:22,208 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:48:18] 2025-10-12 21:39:22,209 | INFO     | ***************************************
[2025-10-12 17:48:18] 2025-10-12 21:39:22,214 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:48:18] 2025-10-12 21:39:22,214 | INFO     | ***************************************
[2025-10-12 17:48:18] 2025-10-12 21:39:22,214 | INFO     | 
[2025-10-12 17:48:18] 2025-10-12 21:39:22,248 | INFO     | architecture information:
[2025-10-12 17:48:18] 2025-10-12 21:39:22,255 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:48:18] 2025-10-12 21:39:22,396 | INFO     | cat /etc/os-release:
[2025-10-12 17:48:18] NAME="CentOS Linux"
[2025-10-12 17:48:18] VERSION="7 (Core)"
[2025-10-12 17:48:18] ID="centos"
[2025-10-12 17:48:18] ID_LIKE="rhel fedora"
[2025-10-12 17:48:18] VERSION_ID="7"
[2025-10-12 17:48:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:48:18] ANSI_COLOR="0;31"
[2025-10-12 17:48:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:48:18] HOME_URL="https://www.centos.org/"
[2025-10-12 17:48:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:48:18] 
[2025-10-12 17:48:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:48:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:48:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:48:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:48:18] 
[2025-10-12 17:48:18] 2025-10-12 21:39:22,396 | INFO     | ***************************************
[2025-10-12 17:48:18] 2025-10-12 21:39:22,901 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 17:48:18] 2025-10-12 21:39:23,036 | INFO     | sufficient remaining disk space (169951100928 B)
[2025-10-12 17:48:18] 2025-10-12 21:39:23,040 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:48:18] 2025-10-12 21:39:23,048 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:48:18] 2025-10-12 21:39:23,048 | INFO     | update_server=False
[2025-10-12 17:48:18] 2025-10-12 21:39:23,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:48:18] 2025-10-12 21:39:23,241 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 17:48:18] 2025-10-12 21:39:23,241 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 17:48:18] 2025-10-12 21:39:23,241 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:48:18] 2025-10-12 21:39:23,241 | INFO     | will abort loop
[2025-10-12 17:48:18] 2025-10-12 21:39:23,618 | INFO     | all payload control threads have been joined
[2025-10-12 17:48:18] 2025-10-12 21:39:23,938 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:48:18] 2025-10-12 21:39:24,058 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:24,149 | INFO     | all data control threads have been joined
[2025-10-12 17:48:18] 2025-10-12 21:39:24,248 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:24,255 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:24,255 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:24,378 | INFO     | all job control threads have been joined
[2025-10-12 17:48:18] 2025-10-12 21:39:24,408 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:24,446 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:24,624 | INFO     | [payload] control thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:24,766 | INFO     | [job] validate thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:24,833 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:24,944 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:25,155 | INFO     | [data] control thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:25,384 | INFO     | [job] control thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:25,554 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:25,599 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:48:18] 2025-10-12 21:39:25,946 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:25,953 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:48:18] 2025-10-12 21:39:26,605 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:29,969 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:48:18] 2025-10-12 21:39:50,617 | INFO     | PID=860120 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 17:48:18] 2025-10-12 21:39:50,617 | INFO     | .. there are 57 such processes running
[2025-10-12 17:48:18] 2025-10-12 21:39:50,617 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:48:18] 2025-10-12 21:39:50,617 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:48:18] 2025-10-12 21:39:50,617 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:48:18] 2025-10-12 21:40:01,547 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:48:18] 2025-10-12 21:40:01,709 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140362707818304)>', '<ExcThread(monitor, started 140362081367808)>']
[2025-10-12 17:48:18] 2025-10-12 21:40:02,703 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:48:18] 2025-10-12 21:40:02,703 | INFO     | [monitor] control thread has ended
[2025-10-12 17:48:18] 2025-10-12 21:40:06,735 | INFO     | all workflow threads have been joined
[2025-10-12 17:48:18] 2025-10-12 21:40:06,735 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:48:18] 2025-10-12 21:40:06,735 | INFO     | traces error code: 0
[2025-10-12 17:48:18] 2025-10-12 21:40:06,735 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:48:18] 2025-10-12 21:40:07,208 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:48:18] 2025-10-12 21:40:07,217 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:48:18] 2025-10-12 21:40:07,373 [wrapper] pilotpid: 860120
[2025-10-12 17:48:18] 2025-10-12 21:40:07,465 [wrapper] Pilot exit status: 0
[2025-10-12 17:48:18] 2025-10-12 21:40:07,633 [wrapper] pandaids: 6840537444
[2025-10-12 17:48:18] 2025-10-12 21:40:08,384 [wrapper] cleanup supervisor_pilot 1755404 860121
[2025-10-12 17:48:18] 2025-10-12 21:40:08,402 [wrapper] Test setup, not cleaning
[2025-10-12 17:48:18] 2025-10-12 21:40:08,452 [wrapper] apfmon messages muted
[2025-10-12 17:48:18] 2025-10-12 21:40:08,474 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:48:18] 2025-10-12 21:40:08,493 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:48:18]  *** Error codes and diagnostics ***
[2025-10-12 17:48:18]     "exeErrorCode": 0,
[2025-10-12 17:48:18]     "exeErrorDiag": "",
[2025-10-12 17:48:18]     "pilotErrorCode": 0,
[2025-10-12 17:48:18]     "pilotErrorDiag": "",
[2025-10-12 17:48:18]  *** Listing of results directory ***
[2025-10-12 17:48:18] total 416176
[2025-10-12 17:48:18] -rwx------. 1 boincer umatlas     36292 Oct 12 14:50 runpilot2-wrapper.sh
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 14:50 pilot3.tar.gz
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 14:50 queuedata.json
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas       100 Oct 12 16:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:48:18] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 16:16 run_atlas
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas       105 Oct 12 16:16 job.xml
[2025-10-12 17:48:18] -rw-r--r--. 2 boincer umatlas 222348073 Oct 12 16:16 EVNT.46676267._004423.pool.root.1
[2025-10-12 17:48:18] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:16 start_atlas.sh
[2025-10-12 17:48:18] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 16:16 shared
[2025-10-12 17:48:18] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 16:16 input.tar.gz
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas         0 Oct 12 16:16 boinc_lockfile
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 16:16 pandaJob.out
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas    975536 Oct 12 16:17 agis_schedconf.cvmfs.json
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas   1560580 Oct 12 16:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:48:18] drwx------. 5 boincer umatlas      4096 Oct 12 16:17 pilot3
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas 197927906 Oct 12 17:37 HITS.46676269._086591.pool.root.1
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas       530 Oct 12 17:37 boinc_task_state.xml
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas      1050 Oct 12 17:38 memory_monitor_summary.json
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas    370392 Oct 12 17:38 log.46676269._086591.job.log.tgz.1
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas        95 Oct 12 17:38 pilot_heartbeat.json
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas      7808 Oct 12 17:39 heartbeat.json
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas      5010 Oct 12 17:40 pilotlog.txt
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas    625650 Oct 12 17:40 log.46676269._086591.job.log.1
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas       357 Oct 12 17:40 output.list
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas       620 Oct 12 17:40 runtime_log
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas   1013760 Oct 12 17:40 result.tar.gz
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas      8695 Oct 12 17:40 runtime_log.err
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas       655 Oct 12 17:40 HW7NDmYKGS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmvhUMDmtGVfQo.diag
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas      7162 Oct 12 17:48 init_data.xml
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas        27 Oct 12 17:48 wrapper_checkpoint.txt
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 17:48 boinc_mmap_file
[2025-10-12 17:48:18] -rw-r--r--. 1 boincer umatlas     12363 Oct 12 17:48 stderr.txt
[2025-10-12 17:48:18] HITS file was successfully produced:
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas 197927906 Oct 12 17:37 shared/HITS.pool.root.1
[2025-10-12 17:48:18]  *** Contents of shared directory: ***
[2025-10-12 17:48:18] total 412004
[2025-10-12 17:48:18] -rw-r--r--. 2 boincer umatlas 222348073 Oct 12 16:16 ATLAS.root_0
[2025-10-12 17:48:18] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:16 start_atlas.sh
[2025-10-12 17:48:18] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 16:16 input.tar.gz
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas 197927906 Oct 12 17:37 HITS.pool.root.1
[2025-10-12 17:48:18] -rw-------. 1 boincer umatlas   1013760 Oct 12 17:40 result.tar.gz
17:48:20 (852115): run_atlas exited; CPU time 23274.439626
17:48:20 (852115): called boinc_finish(0)

</stderr_txt>
]]>

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