Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:22:13 (4005251): wrapper (7.7.26015): starting
16:22:13 (4005251): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:22:13] Arguments: --nthreads 8
[2025-10-12 16:22:13] Threads: 8
[2025-10-12 16:22:13] Checking for CVMFS
[2025-10-12 16:22:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:22:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:22:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:22:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:22:15] 2.13.2.0 8406 36979 81644 151636 0 211 25988867 40960000 26261 16776704 0 232295907 99.854 81926952 49335 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 16:22:15] CVMFS is ok
[2025-10-12 16:22:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:22:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:22:15] Further information can be found at the LHC@home message board.
[2025-10-12 16:22:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:22:15] Checking for apptainer binary...
[2025-10-12 16:22:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:22:15] Running /usr/bin/apptainer --version
[2025-10-12 16:22:15] apptainer version 1.4.3-1.el9
[2025-10-12 16:22:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:22:16] c-208-37.aglt2.org
[2025-10-12 16:22:16] apptainer works
[2025-10-12 16:22:16] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:22:16] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:22:16] Starting ATLAS job with PandaID=6839867652
[2025-10-12 16:22:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:07:56]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:07:56] 2025-10-12 22:06:40,843 | INFO     | preparing for final server update for job 6839867652 in state='finished'
[2025-10-12 18:07:56] 2025-10-12 22:06:40,843 | INFO     | this job has now completed (state=finished)
[2025-10-12 18:07:56] 2025-10-12 22:06:40,843 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 18:07:56] 2025-10-12 22:06:40,861 | INFO     | log transfer has been attempted: DONE
[2025-10-12 18:07:56] 2025-10-12 22:06:40,862 | INFO     | job 6839867652 has finished - writing final server update
[2025-10-12 18:07:56] 2025-10-12 22:06:40,862 | INFO     | total number of processed events: 400 (read)
[2025-10-12 18:07:56] 2025-10-12 22:06:40,862 | INFO     | executing command: lscpu
[2025-10-12 18:07:56] 2025-10-12 22:06:41,125 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 18:07:56] 2025-10-12 22:06:42,645 | INFO     | time since job start (6184s) is within the limit (172800.0s)
[2025-10-12 18:07:56] 2025-10-12 22:06:42,725 | INFO     | monitor loop #419: job 0:6839867652 is in state 'finished'
[2025-10-12 18:07:56] 2025-10-12 22:06:42,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:07:56] 2025-10-12 22:06:44,652 | INFO     | time since job start (6186s) is within the limit (172800.0s)
[2025-10-12 18:07:56] 2025-10-12 22:06:45,230 | INFO     | monitor loop #420: job 0:6839867652 is in state 'finished'
[2025-10-12 18:07:56] 2025-10-12 22:06:45,230 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:07:56] 2025-10-12 22:06:46,659 | INFO     | time since job start (6188s) is within the limit (172800.0s)
[2025-10-12 18:07:56] 2025-10-12 22:06:47,735 | INFO     | monitor loop #421: job 0:6839867652 is in state 'finished'
[2025-10-12 18:07:56] 2025-10-12 22:06:47,737 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:07:56] 2025-10-12 22:06:48,668 | INFO     | time since job start (6190s) is within the limit (172800.0s)
[2025-10-12 18:07:56] 2025-10-12 22:06:50,247 | INFO     | monitor loop #422: job 0:6839867652 is in state 'finished'
[2025-10-12 18:07:56] 2025-10-12 22:06:50,248 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:07:56] 2025-10-12 22:06:50,675 | INFO     | time since job start (6192s) is within the limit (172800.0s)
[2025-10-12 18:07:56] 2025-10-12 22:06:52,688 | INFO     | time since job start (6194s) is within the limit (172800.0s)
[2025-10-12 18:07:56] 2025-10-12 22:06:52,753 | INFO     | monitor loop #423: job 0:6839867652 is in state 'finished'
[2025-10-12 18:07:56] 2025-10-12 22:06:52,754 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:07:56] 2025-10-12 22:06:54,695 | INFO     | time since job start (6196s) is within the limit (172800.0s)
[2025-10-12 18:07:56] 2025-10-12 22:06:55,258 | INFO     | monitor loop #424: job 0:6839867652 is in state 'finished'
[2025-10-12 18:07:56] 2025-10-12 22:06:55,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:07:56] 2025-10-12 22:06:56,702 | INFO     | time since job start (6198s) is within the limit (172800.0s)
[2025-10-12 18:07:56] 2025-10-12 22:06:57,763 | INFO     | monitor loop #425: job 0:6839867652 is in state 'finished'
[2025-10-12 18:07:56] 2025-10-12 22:06:57,763 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:07:56] 2025-10-12 22:06:58,835 | INFO     | PID=4013980 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 18:07:56] 2025-10-12 22:06:58,835 | INFO     | .. there are 22 such processes running
[2025-10-12 18:07:56] 2025-10-12 22:06:59,836 | INFO     | time since job start (6201s) is within the limit (172800.0s)
[2025-10-12 18:07:56] 2025-10-12 22:07:00,268 | INFO     | monitor loop #426: job 0:6839867652 is in state 'finished'
[2025-10-12 18:07:56] 2025-10-12 22:07:00,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:07:56] 2025-10-12 22:07:01,100 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 18:07:56] 2025-10-12 22:07:01,110 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3727.064749999999
[2025-10-12 18:07:56] 2025-10-12 22:07:01,147 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6839867652/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:07:56] 2025-10-12 22:07:01,148 | INFO     | extracted standard info from prmon json
[2025-10-12 18:07:56] 2025-10-12 22:07:01,148 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:07:56] 2025-10-12 22:07:01,148 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:07:56] 2025-10-12 22:07:01,148 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:07:56] 2025-10-12 22:07:01,148 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:07:56] 2025-10-12 22:07:01,149 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:07:56] 2025-10-12 22:07:01,150 | INFO     | sum of square deviations: 241433306.8260872
[2025-10-12 18:07:56] 2025-10-12 22:07:01,150 | INFO     | sum of deviations: -720813851.6521748
[2025-10-12 18:07:56] 2025-10-12 22:07:01,150 | INFO     | mean x: 1760303862.5434783
[2025-10-12 18:07:56] 2025-10-12 22:07:01,150 | INFO     | mean y: 2515673.913043478
[2025-10-12 18:07:56] 2025-10-12 22:07:01,150 | INFO     | -- intersect: 5258010137.036819
[2025-10-12 18:07:56] 2025-10-12 22:07:01,150 | INFO     | intersect: 5258010137.036819
[2025-10-12 18:07:56] 2025-10-12 22:07:01,150 | INFO     | chi2: 0.14953574166673134
[2025-10-12 18:07:56] 2025-10-12 22:07:01,150 | INFO     | -- intersect: 5258010137.036819
[2025-10-12 18:07:56] 2025-10-12 22:07:01,151 | INFO     | current memory leak: -2.99 B/s (using 92 data points, chi2=0.15)
[2025-10-12 18:07:56] 2025-10-12 22:07:01,151 | INFO     | could have reported an average CPU frequency of 3680 MHz (7 samples)
[2025-10-12 18:07:56] 2025-10-12 22:07:01,151 | INFO     | ..............................
[2025-10-12 18:07:56] 2025-10-12 22:07:01,151 | INFO     | . Timing measurements:
[2025-10-12 18:07:56] 2025-10-12 22:07:01,151 | INFO     | . get job = 0 s
[2025-10-12 18:07:56] 2025-10-12 22:07:01,151 | INFO     | . initial setup = 6 s
[2025-10-12 18:07:56] 2025-10-12 22:07:01,151 | INFO     | . payload setup = 49 s
[2025-10-12 18:07:56] 2025-10-12 22:07:01,151 | INFO     | . stage-in = 0 s
[2025-10-12 18:07:56] 2025-10-12 22:07:01,151 | INFO     | . payload execution = 6047 s
[2025-10-12 18:07:56] 2025-10-12 22:07:01,151 | INFO     | . stage-out = 1 s
[2025-10-12 18:07:56] 2025-10-12 22:07:01,151 | INFO     | . log creation = 0 s
[2025-10-12 18:07:56] 2025-10-12 22:07:01,151 | INFO     | ..............................
[2025-10-12 18:07:56] 2025-10-12 22:07:01,421 | INFO     | 
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | job summary report
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | --------------------------------------------------
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | PanDA job id: 6839867652
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | task id: 46676269
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | errors: (none)
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | pilot state: finished 
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | transexitcode: 0
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | exeerrorcode: 0
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | exeerrordiag: 
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | exitcode: 0
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | exitmsg: OK
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | cpuconsumptiontime: 23519 s
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | nevents: 400
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | neventsw: 0
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | pid: 4039952
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | pgrp: 4039952
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | corecount: 8
[2025-10-12 18:07:56] 2025-10-12 22:07:01,423 | INFO     | event service: False
[2025-10-12 18:07:56] 2025-10-12 22:07:01,424 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 13: 2348913, 24: 2348969, 35: 2349415, 46: 2349415, 6101: 2376470, 6103: 2385468, 6105: 2385524, 6127: 2385718}
[2025-10-12 18:07:56] 2025-10-12 22:07:01,424 | INFO     | --------------------------------------------------
[2025-10-12 18:07:56] 2025-10-12 22:07:01,424 | INFO     | 
[2025-10-12 18:07:56] 2025-10-12 22:07:01,424 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 18:07:56] 2025-10-12 22:07:01,615 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,616 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:07:56] 2025-10-12 22:07:01,617 | INFO     | job 6839867652 has completed (purged errors)
[2025-10-12 18:07:56] 2025-10-12 22:07:01,617 | INFO     | overall cleanup function is called
[2025-10-12 18:07:56] 2025-10-12 22:07:02,624 | INFO     | --- collectZombieJob: --- 10, [4039952]
[2025-10-12 18:07:56] 2025-10-12 22:07:02,625 | INFO     | zombie collector waiting for pid 4039952
[2025-10-12 18:07:56] 2025-10-12 22:07:02,625 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:07:56] 2025-10-12 22:07:02,625 | INFO     | collected zombie processes
[2025-10-12 18:07:56] 2025-10-12 22:07:02,625 | INFO     | will attempt to kill all subprocesses of pid=4039952
[2025-10-12 18:07:56] 2025-10-12 22:07:03,615 | INFO     | process IDs to be killed: [4039952] (in reverse order)
[2025-10-12 18:07:56] 2025-10-12 22:07:03,786 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:07:56] 2025-10-12 22:07:03,787 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:07:56] 2025-10-12 22:07:03,808 | INFO     | did not find any defunct processes belonging to 4039952
[2025-10-12 18:07:56] 2025-10-12 22:07:03,828 | INFO     | did not find any defunct processes belonging to 4039952
[2025-10-12 18:07:56] 2025-10-12 22:07:03,828 | INFO     | ready for new job
[2025-10-12 18:07:56] 2025-10-12 22:07:03,829 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:07:56] 2025-10-12 22:07:03,835 | INFO     | ***************************************
[2025-10-12 18:07:56] 2025-10-12 22:07:03,835 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:07:56] 2025-10-12 22:07:03,835 | INFO     | ***************************************
[2025-10-12 18:07:56] 2025-10-12 22:07:03,835 | INFO     | 
[2025-10-12 18:07:56] 2025-10-12 22:07:03,856 | INFO     | architecture information:
[2025-10-12 18:07:56] 2025-10-12 22:07:03,865 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:07:56] 2025-10-12 22:07:03,920 | INFO     | cat /etc/os-release:
[2025-10-12 18:07:56] NAME="CentOS Linux"
[2025-10-12 18:07:56] VERSION="7 (Core)"
[2025-10-12 18:07:56] ID="centos"
[2025-10-12 18:07:56] ID_LIKE="rhel fedora"
[2025-10-12 18:07:56] VERSION_ID="7"
[2025-10-12 18:07:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:07:56] ANSI_COLOR="0;31"
[2025-10-12 18:07:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:07:56] HOME_URL="https://www.centos.org/"
[2025-10-12 18:07:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:07:56] 
[2025-10-12 18:07:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:07:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:07:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:07:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:07:56] 
[2025-10-12 18:07:56] 2025-10-12 22:07:03,920 | INFO     | ***************************************
[2025-10-12 18:07:56] 2025-10-12 22:07:04,423 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 18:07:56] 2025-10-12 22:07:04,463 | INFO     | sufficient remaining disk space (170110484480 B)
[2025-10-12 18:07:56] 2025-10-12 22:07:04,463 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:07:56] 2025-10-12 22:07:04,463 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:07:56] 2025-10-12 22:07:04,463 | INFO     | update_server=False
[2025-10-12 18:07:56] 2025-10-12 22:07:04,463 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:07:56] 2025-10-12 22:07:04,463 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:07:56] 2025-10-12 22:07:04,464 | INFO     | aborting loop
[2025-10-12 18:07:56] 2025-10-12 22:07:04,963 | INFO     | all payload control threads have been joined
[2025-10-12 18:07:56] 2025-10-12 22:07:05,255 | INFO     | all data control threads have been joined
[2025-10-12 18:07:56] 2025-10-12 22:07:05,471 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:05,472 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:05,494 | INFO     | all job control threads have been joined
[2025-10-12 18:07:56] 2025-10-12 22:07:05,506 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:07:56] 2025-10-12 22:07:05,675 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:05,702 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:05,907 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:05,969 | INFO     | [payload] control thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:06,074 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:06,262 | INFO     | [data] control thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:06,279 | INFO     | [job] validate thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:06,311 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:07:56] 2025-10-12 22:07:06,417 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:06,500 | INFO     | [job] control thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:06,616 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:07,316 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:07,505 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:07:56] 2025-10-12 22:07:07,527 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:11,516 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:14,929 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:07:56] 2025-10-12 22:07:15,937 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:07:56] 2025-10-12 22:07:34,431 | INFO     | PID=4013980 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 18:07:56] 2025-10-12 22:07:34,437 | INFO     | .. there are 22 such processes running
[2025-10-12 18:07:56] 2025-10-12 22:07:34,438 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:07:56] 2025-10-12 22:07:34,438 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:07:56] 2025-10-12 22:07:34,438 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:07:56] 2025-10-12 22:07:48,360 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:07:56] 2025-10-12 22:07:49,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140222049974080)>', '<ExcThread(monitor, started 140221387618048)>']
[2025-10-12 18:07:56] 2025-10-12 22:07:49,553 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:07:56] 2025-10-12 22:07:49,555 | INFO     | [monitor] control thread has ended
[2025-10-12 18:07:56] 2025-10-12 22:07:54,269 | INFO     | all workflow threads have been joined
[2025-10-12 18:07:56] 2025-10-12 22:07:54,270 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:07:56] 2025-10-12 22:07:54,270 | INFO     | traces error code: 0
[2025-10-12 18:07:56] 2025-10-12 22:07:54,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:07:56] 2025-10-12 22:07:55,557 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:07:56] 2025-10-12 22:07:55,575 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:07:56] 2025-10-12 22:07:55,598 [wrapper] pilotpid: 4013980
[2025-10-12 18:07:56] 2025-10-12 22:07:55,620 [wrapper] Pilot exit status: 0
[2025-10-12 18:07:56] 2025-10-12 22:07:55,719 [wrapper] pandaids: 6839867652
[2025-10-12 18:07:56] 2025-10-12 22:07:56,019 [wrapper] cleanup supervisor_pilot  124485 4013981
[2025-10-12 18:07:56] 2025-10-12 22:07:56,026 [wrapper] Test setup, not cleaning
[2025-10-12 18:07:56] 2025-10-12 22:07:56,033 [wrapper] apfmon messages muted
[2025-10-12 18:07:56] 2025-10-12 22:07:56,041 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:07:56] 2025-10-12 22:07:56,058 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:07:56]  *** Error codes and diagnostics ***
[2025-10-12 18:07:56]     "exeErrorCode": 0,
[2025-10-12 18:07:56]     "exeErrorDiag": "",
[2025-10-12 18:07:56]     "pilotErrorCode": 0,
[2025-10-12 18:07:56]     "pilotErrorDiag": "",
[2025-10-12 18:07:56]  *** Listing of results directory ***
[2025-10-12 18:07:56] total 415284
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 06:57 pilot3.tar.gz
[2025-10-12 18:07:56] -rwx------. 1 boincer umatlas     36292 Oct 12 06:59 runpilot2-wrapper.sh
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 06:59 queuedata.json
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas       100 Oct 12 16:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:07:56] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 16:22 run_atlas
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas       105 Oct 12 16:22 job.xml
[2025-10-12 18:07:56] -rw-r--r--. 2 boincer umatlas 223670041 Oct 12 16:22 EVNT.46676267._003646.pool.root.1
[2025-10-12 18:07:56] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:22 start_atlas.sh
[2025-10-12 18:07:56] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 16:22 shared
[2025-10-12 18:07:56] -rw-r--r--. 2 boincer umatlas    569676 Oct 12 16:22 input.tar.gz
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas         0 Oct 12 16:22 boinc_lockfile
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 16:22 pandaJob.out
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas    975536 Oct 12 16:23 agis_schedconf.cvmfs.json
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas   1560580 Oct 12 16:23 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:07:56] drwx------. 5 boincer umatlas      4096 Oct 12 16:23 pilot3
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas      7174 Oct 12 18:04 init_data.xml
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas 195301577 Oct 12 18:05 HITS.46676269._076531.pool.root.1
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas       530 Oct 12 18:05 boinc_task_state.xml
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas      1046 Oct 12 18:06 memory_monitor_summary.json
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas    351912 Oct 12 18:06 log.46676269._076531.job.log.tgz.1
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas      7802 Oct 12 18:07 heartbeat.json
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas        95 Oct 12 18:07 pilot_heartbeat.json
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas      4897 Oct 12 18:07 pilotlog.txt
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 18:07 boinc_mmap_file
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas        27 Oct 12 18:07 wrapper_checkpoint.txt
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas    834318 Oct 12 18:07 log.46676269._076531.job.log.1
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas       357 Oct 12 18:07 output.list
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas       620 Oct 12 18:07 runtime_log
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas   1208320 Oct 12 18:07 result.tar.gz
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 18:07 runtime_log.err
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas       657 Oct 12 18:07 q8RLDmmy8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0WjNDmCrHPNn.diag
[2025-10-12 18:07:56] -rw-r--r--. 1 boincer umatlas     22329 Oct 12 18:07 stderr.txt
[2025-10-12 18:07:56] HITS file was successfully produced:
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas 195301577 Oct 12 18:05 shared/HITS.pool.root.1
[2025-10-12 18:07:56]  *** Contents of shared directory: ***
[2025-10-12 18:07:56] total 410920
[2025-10-12 18:07:56] -rw-r--r--. 2 boincer umatlas 223670041 Oct 12 16:22 ATLAS.root_0
[2025-10-12 18:07:56] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:22 start_atlas.sh
[2025-10-12 18:07:56] -rw-r--r--. 2 boincer umatlas    569676 Oct 12 16:22 input.tar.gz
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas 195301577 Oct 12 18:05 HITS.pool.root.1
[2025-10-12 18:07:56] -rw-------. 1 boincer umatlas   1208320 Oct 12 18:07 result.tar.gz
18:07:57 (4005251): run_atlas exited; CPU time 23667.842509
18:07:57 (4005251): called boinc_finish(0)

</stderr_txt>
]]>

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