Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
00:06:32 (26992): wrapper (7.7.26015): starting
00:06:32 (26992): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 00:06:32] Arguments: --nthreads 8
[2025-10-13 00:06:32] Threads: 8
[2025-10-13 00:06:32] Checking for CVMFS
[2025-10-13 00:06:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:06:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:06:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:06:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:06:32] 2.11.0.0 4333 1067 61012 151639 3 1 1855669 4096000 0 130560 0 1311219 99.498 707510 1145 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-13 00:06:32] CVMFS is ok
[2025-10-13 00:06:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:06:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:06:32] Further information can be found at the LHC@home message board.
[2025-10-13 00:06:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:06:32] Checking for apptainer binary...
[2025-10-13 00:06:32] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-13 00:06:32] apptainer is not installed, using version from CVMFS
[2025-10-13 00:06:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:06:33] WARNING: Environment variable TMPDIR already has value [/tmp/job_10532471/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node035
[2025-10-13 00:06:33] apptainer works
[2025-10-13 00:06:33] Set ATHENA_PROC_NUMBER=8
[2025-10-13 00:06:33] Set ATHENA_CORE_NUMBER=8
[2025-10-13 00:06:33] Starting ATLAS job with PandaID=6829511464
[2025-10-13 00:06:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10532471/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 00:49:47]  *** The last 200 lines of the pilot log: ***
[2025-10-13 00:49:47]  surl=/tmp/job_10532471/atlas/pilot/slots/0/PanDA_Pilot-6829511464/log.46376905._056323.job.log.tgz.1
[2025-10-13 00:49:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2f/9f/log.46376905._056323.job.log.tgz.1
[2025-10-13 00:49:47]  workdir=None
[2025-10-13 00:49:47] ]
[2025-10-13 00:49:47] 2025-10-12 22:48:32,382 | INFO     | transferring file log.46376905._056323.job.log.tgz.1 from /tmp/job_10532471/atlas/pilot/slots/0/PanDA_Pilot-6829511464/log.46376905._056323.job.log.tgz.1 to /tmp/j
[2025-10-13 00:49:47] 2025-10-12 22:48:32,382 | INFO     | executing command: /usr/bin/env mv /tmp/job_10532471/atlas/pilot/slots/0/PanDA_Pilot-6829511464/log.46376905._056323.job.log.tgz.1 /tmp/job_10532471/atlas/pilot/sl
[2025-10-13 00:49:47] 2025-10-12 22:48:32,391 | INFO     | adding to output.list: log.46376905._056323.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2f/9f/log.46376905._056323.job.log.tg
[2025-10-13 00:49:47] 2025-10-12 22:48:32,391 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 00:49:47] 2025-10-12 22:48:32,391 | INFO     | summary of transferred files:
[2025-10-13 00:49:47] 2025-10-12 22:48:32,391 | INFO     |  -- lfn=log.46376905._056323.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 00:49:47] 2025-10-12 22:48:32,391 | INFO     | stage-out finished correctly
[2025-10-13 00:49:47] 2025-10-12 22:48:33,136 | INFO     | time since job start (2515s) is within the limit (172800.0s)
[2025-10-13 00:49:47] 2025-10-12 22:48:34,514 | INFO     | monitor loop #190: job 0:6829511464 is in state 'finished'
[2025-10-13 00:49:47] 2025-10-12 22:48:34,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 00:49:47] 2025-10-12 22:48:35,141 | INFO     | time since job start (2517s) is within the limit (172800.0s)
[2025-10-13 00:49:47] 2025-10-12 22:48:35,529 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 00:49:47] 2025-10-12 22:48:37,017 | INFO     | monitor loop #191: job 0:6829511464 is in state 'finished'
[2025-10-13 00:49:47] 2025-10-12 22:48:37,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 00:49:47] 2025-10-12 22:48:37,146 | INFO     | time since job start (2519s) is within the limit (172800.0s)
[2025-10-13 00:49:47] 2025-10-12 22:48:38,272 | INFO     | PID=31720 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 00:49:47] 2025-10-12 22:48:38,272 | INFO     | .. there are 2 such processes running
[2025-10-13 00:49:47] 2025-10-12 22:48:38,465 | INFO     | job 6829511464 has state=finished
[2025-10-13 00:49:47] 2025-10-12 22:48:38,465 | INFO     | preparing for final server update for job 6829511464 in state='finished'
[2025-10-13 00:49:47] 2025-10-12 22:48:38,465 | INFO     | this job has now completed (state=finished)
[2025-10-13 00:49:47] 2025-10-12 22:48:38,465 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 00:49:47] 2025-10-12 22:48:38,465 | INFO     | log transfer has been attempted: DONE
[2025-10-13 00:49:47] 2025-10-12 22:48:38,465 | INFO     | job 6829511464 has finished - writing final server update
[2025-10-13 00:49:47] 2025-10-12 22:48:38,465 | INFO     | total number of processed events: 400 (read)
[2025-10-13 00:49:47] 2025-10-12 22:48:38,466 | INFO     | executing command: lscpu
[2025-10-13 00:49:47] 2025-10-12 22:48:38,496 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 00:49:47] 2025-10-12 22:48:39,273 | INFO     | time since job start (2521s) is within the limit (172800.0s)
[2025-10-13 00:49:47] 2025-10-12 22:48:39,520 | INFO     | monitor loop #192: job 0:6829511464 is in state 'finished'
[2025-10-13 00:49:47] 2025-10-12 22:48:39,520 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 00:49:47] 2025-10-12 22:48:40,261 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 00:49:47] 2025-10-12 22:48:40,265 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2490.3014843749997
[2025-10-13 00:49:47] 2025-10-12 22:48:40,270 | INFO     | using path: /tmp/job_10532471/atlas/pilot/slots/0/PanDA_Pilot-6829511464/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 00:49:47] 2025-10-12 22:48:40,270 | INFO     | extracted standard info from prmon json
[2025-10-13 00:49:47] 2025-10-12 22:48:40,271 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 00:49:47] 2025-10-12 22:48:40,271 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 00:49:47] 2025-10-12 22:48:40,271 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 00:49:47] 2025-10-12 22:48:40,271 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 00:49:47] 2025-10-12 22:48:40,271 | INFO     | fitting pss+swap vs Time
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | sum of square deviations: 12176972.5
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | sum of deviations: -696403541.5
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | mean x: 1760308126.5
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | mean y: 2550955.970588235
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | -- intersect: 100674931831.08794
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | intersect: 100674931831.08794
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | chi2: 0.04365161333635823
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | -- intersect: 100674931831.08794
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | current memory leak: -57.19 B/s (using 34 data points, chi2=0.04)
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | could have reported an average CPU frequency of 2519 MHz (5 samples)
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | ..............................
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | . Timing measurements:
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | . get job = 0 s
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | . initial setup = 1 s
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | . payload setup = 2 s
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | . stage-in = 0 s
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | . payload execution = 2494 s
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | . stage-out = 0 s
[2025-10-13 00:49:47] 2025-10-12 22:48:40,272 | INFO     | . log creation = 0 s
[2025-10-13 00:49:47] 2025-10-12 22:48:40,273 | INFO     | ..............................
[2025-10-13 00:49:47] 2025-10-12 22:48:40,322 | INFO     | 
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | job summary report
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | --------------------------------------------------
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | PanDA job id: 6829511464
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | task id: 46376905
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | errors: (none)
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | pilot state: finished 
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | transexitcode: 0
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | exeerrorcode: 0
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | exeerrordiag: 
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | exitcode: 0
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | exitmsg: OK
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | cpuconsumptiontime: 18300 s
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | nevents: 400
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | neventsw: 0
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | pid: 7796
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | pgrp: 7796
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | corecount: 8
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | event service: False
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | sizes: {0: 2348942, 2: 2349204, 11: 2349232, 2500: 2374543, 2501: 2383571, 2505: 2383627, 2509: 2383981}
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | --------------------------------------------------
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | 
[2025-10-13 00:49:47] 2025-10-12 22:48:40,323 | INFO     | executing command: ls -lF /tmp/job_10532471/atlas/pilot/slots/0
[2025-10-13 00:49:47] 2025-10-12 22:48:40,332 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 00:49:47] 2025-10-12 22:48:40,333 | INFO     | job 6829511464 has completed (purged errors)
[2025-10-13 00:49:47] 2025-10-12 22:48:40,334 | INFO     | overall cleanup function is called
[2025-10-13 00:49:47] 2025-10-12 22:48:41,339 | INFO     | --- collectZombieJob: --- 10, [7796]
[2025-10-13 00:49:47] 2025-10-12 22:48:41,340 | INFO     | zombie collector waiting for pid 7796
[2025-10-13 00:49:47] 2025-10-12 22:48:41,340 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 00:49:47] 2025-10-12 22:48:41,340 | INFO     | collected zombie processes
[2025-10-13 00:49:47] 2025-10-12 22:48:41,340 | INFO     | will attempt to kill all subprocesses of pid=7796
[2025-10-13 00:49:47] 2025-10-12 22:48:41,435 | INFO     | process IDs to be killed: [7796] (in reverse order)
[2025-10-13 00:49:47] 2025-10-12 22:48:41,468 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 00:49:47] 2025-10-12 22:48:41,469 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 00:49:47] 2025-10-12 22:48:41,472 | INFO     | did not find any defunct processes belonging to 7796
[2025-10-13 00:49:47] 2025-10-12 22:48:41,475 | INFO     | did not find any defunct processes belonging to 7796
[2025-10-13 00:49:47] 2025-10-12 22:48:41,475 | INFO     | ready for new job
[2025-10-13 00:49:47] 2025-10-12 22:48:41,475 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 00:49:47] 2025-10-12 22:48:41,475 | INFO     | ***************************************
[2025-10-13 00:49:47] 2025-10-12 22:48:41,475 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 00:49:47] 2025-10-12 22:48:41,476 | INFO     | ***************************************
[2025-10-13 00:49:47] 2025-10-12 22:48:41,476 | INFO     | 
[2025-10-13 00:49:47] 2025-10-12 22:48:41,490 | INFO     | architecture information:
[2025-10-13 00:49:47] 2025-10-12 22:48:41,490 | INFO     | executing command: cat /etc/os-release
[2025-10-13 00:49:47] 2025-10-12 22:48:41,496 | INFO     | cat /etc/os-release:
[2025-10-13 00:49:47] NAME="CentOS Linux"
[2025-10-13 00:49:47] VERSION="7 (Core)"
[2025-10-13 00:49:47] ID="centos"
[2025-10-13 00:49:47] ID_LIKE="rhel fedora"
[2025-10-13 00:49:47] VERSION_ID="7"
[2025-10-13 00:49:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 00:49:47] ANSI_COLOR="0;31"
[2025-10-13 00:49:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 00:49:47] HOME_URL="https://www.centos.org/"
[2025-10-13 00:49:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 00:49:47] 
[2025-10-13 00:49:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 00:49:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 00:49:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 00:49:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 00:49:47] 
[2025-10-13 00:49:47] 2025-10-12 22:48:41,496 | INFO     | ***************************************
[2025-10-13 00:49:47] 2025-10-12 22:48:41,999 | INFO     | executing command: df -mP /tmp/job_10532471/atlas/pilot/slots/0
[2025-10-13 00:49:47] 2025-10-12 22:48:42,006 | INFO     | sufficient remaining disk space (226894020608 B)
[2025-10-13 00:49:47] 2025-10-12 22:48:42,006 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 00:49:47] 2025-10-12 22:48:42,006 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 00:49:47] 2025-10-12 22:48:42,006 | INFO     | update_server=False
[2025-10-13 00:49:47] 2025-10-12 22:48:42,006 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 00:49:47] 2025-10-12 22:48:42,006 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:49:47] 2025-10-12 22:48:42,006 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 00:49:47] 2025-10-12 22:48:42,023 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 00:49:47] 2025-10-12 22:48:42,023 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 00:49:47] 2025-10-12 22:48:42,023 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 00:49:47] 2025-10-12 22:48:42,023 | INFO     | will abort loop
[2025-10-13 00:49:47] 2025-10-12 22:48:42,587 | INFO     | all data control threads have been joined
[2025-10-13 00:49:47] 2025-10-12 22:48:42,682 | INFO     | all job control threads have been joined
[2025-10-13 00:49:47] 2025-10-12 22:48:42,958 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 00:49:47] 2025-10-12 22:48:43,011 | INFO     | [job] retrieve thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:43,011 | INFO     | [job] queue monitor thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:43,028 | INFO     | [job] job monitor thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:43,352 | INFO     | [job] validate thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:43,417 | INFO     | all payload control threads have been joined
[2025-10-13 00:49:47] 2025-10-12 22:48:43,520 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:43,581 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:43,593 | INFO     | [data] control thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:43,593 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:43,687 | INFO     | [job] control thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:44,075 | INFO     | [data] copytool_in thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:44,137 | INFO     | [payload] failed_post thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:44,422 | INFO     | [payload] control thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:44,462 | INFO     | [payload] validate_post thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:44,963 | INFO     | [data] copytool_out thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:46,012 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:48:52,093 | INFO     | job.realtimelogging is not enabled
[2025-10-13 00:49:47] 2025-10-12 22:48:53,098 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 00:49:47] 2025-10-12 22:49:12,466 | INFO     | PID=31720 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 00:49:47] 2025-10-12 22:49:12,466 | INFO     | .. there are 2 such processes running
[2025-10-13 00:49:47] 2025-10-12 22:49:12,466 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 00:49:47] 2025-10-12 22:49:12,466 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 00:49:47] 2025-10-12 22:49:12,466 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 00:49:47] 2025-10-12 22:49:41,792 | INFO     | [monitor] cgroup control has ended
[2025-10-13 00:49:47] 2025-10-12 22:49:41,861 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456066770688)>']
[2025-10-13 00:49:47] 2025-10-12 22:49:42,615 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 00:49:47] 2025-10-12 22:49:42,615 | INFO     | [monitor] control thread has ended
[2025-10-13 00:49:47] 2025-10-12 22:49:46,886 | INFO     | all workflow threads have been joined
[2025-10-13 00:49:47] 2025-10-12 22:49:46,887 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 00:49:47] 2025-10-12 22:49:46,887 | INFO     | traces error code: 0
[2025-10-13 00:49:47] 2025-10-12 22:49:46,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 00:49:47] 2025-10-12 22:49:46,940 [wrapper] ==== pilot stdout END ====
[2025-10-13 00:49:47] 2025-10-12 22:49:46,942 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 00:49:47] 2025-10-12 22:49:46,943 [wrapper] pilotpid: 31720
[2025-10-13 00:49:47] 2025-10-12 22:49:46,944 [wrapper] Pilot exit status: 0
[2025-10-13 00:49:47] 2025-10-12 22:49:46,949 [wrapper] pandaids: 6829511464
[2025-10-13 00:49:47] 2025-10-12 22:49:46,972 [wrapper] cleanup supervisor_pilot 10103 31721
[2025-10-13 00:49:47] 2025-10-12 22:49:46,973 [wrapper] Test setup, not cleaning
[2025-10-13 00:49:47] 2025-10-12 22:49:46,974 [wrapper] apfmon messages muted
[2025-10-13 00:49:47] 2025-10-12 22:49:46,975 [wrapper] ==== wrapper stdout END ====
[2025-10-13 00:49:47] 2025-10-12 22:49:46,976 [wrapper] ==== wrapper stderr END ====
[2025-10-13 00:49:47]  *** Error codes and diagnostics ***
[2025-10-13 00:49:47]     "exeErrorCode": 0,
[2025-10-13 00:49:47]     "exeErrorDiag": "",
[2025-10-13 00:49:47]     "pilotErrorCode": 0,
[2025-10-13 00:49:47]     "pilotErrorDiag": "",
[2025-10-13 00:49:47]  *** Listing of results directory ***
[2025-10-13 00:49:47] total 384432
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user    552446 Oct  4 11:01 pilot3.tar.gz
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user      5112 Oct  4 11:14 queuedata.json
[2025-10-13 00:49:47] -rwx------ 1 mf493845 unix-user     36292 Oct  4 11:16 runpilot2-wrapper.sh
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user       100 Oct 12 23:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 00:49:47] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 23:11 run_atlas
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user       105 Oct 12 23:11 job.xml
[2025-10-13 00:49:47] -rw-r--r-- 2 mf493845 unix-user 214237496 Oct 13 00:06 EVNT.46376901._002013.pool.root.1
[2025-10-13 00:49:47] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 13 00:06 start_atlas.sh
[2025-10-13 00:49:47] drwxrwx--x 2 mf493845 unix-user       100 Oct 13 00:06 shared
[2025-10-13 00:49:47] -rw-r--r-- 2 mf493845 unix-user    565600 Oct 13 00:06 input.tar.gz
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user      6393 Oct 13 00:06 init_data.xml
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user         0 Oct 13 00:06 boinc_setup_complete
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user      8192 Oct 13 00:06 boinc_mmap_file
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user         0 Oct 13 00:06 boinc_lockfile
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user      2519 Oct 13 00:06 pandaJob.out
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user    975528 Oct 13 00:06 agis_schedconf.cvmfs.json
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user   1560580 Oct 13 00:06 agis_ddmendpoints.agis.ALL.json
[2025-10-13 00:49:47] drwx------ 4 mf493845 unix-user       400 Oct 13 00:06 pilot3
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user 174135153 Oct 13 00:48 HITS.46376905._056323.pool.root.1
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user      1016 Oct 13 00:48 memory_monitor_summary.json
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user    304790 Oct 13 00:48 log.46376905._056323.job.log.tgz.1
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user      7777 Oct 13 00:48 heartbeat.json
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user        95 Oct 13 00:49 pilot_heartbeat.json
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user      5093 Oct 13 00:49 pilotlog.txt
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user    404932 Oct 13 00:49 log.46376905._056323.job.log.1
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user       357 Oct 13 00:49 output.list
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user       620 Oct 13 00:49 runtime_log
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user    727040 Oct 13 00:49 result.tar.gz
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user       644 Oct 13 00:49 yUcKDmeYDP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFqKNDmmfBLim.diag
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user      9076 Oct 13 00:49 runtime_log.err
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user     22760 Oct 13 00:49 stderr.txt
[2025-10-13 00:49:47] HITS file was successfully produced:
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user 174135153 Oct 13 00:48 shared/HITS.pool.root.1
[2025-10-13 00:49:47]  *** Contents of shared directory: ***
[2025-10-13 00:49:47] total 380560
[2025-10-13 00:49:47] -rw-r--r-- 2 mf493845 unix-user 214237496 Oct 13 00:06 ATLAS.root_0
[2025-10-13 00:49:47] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 13 00:06 start_atlas.sh
[2025-10-13 00:49:47] -rw-r--r-- 2 mf493845 unix-user    565600 Oct 13 00:06 input.tar.gz
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user 174135153 Oct 13 00:48 HITS.pool.root.1
[2025-10-13 00:49:47] -rw------- 1 mf493845 unix-user    727040 Oct 13 00:49 result.tar.gz
00:49:48 (26992): run_atlas exited; CPU time 18332.748144
00:49:48 (26992): called boinc_finish(0)

</stderr_txt>
]]>

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