Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:19:41 (4090489): wrapper (7.7.26015): starting
16:19:41 (4090489): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:19:41] Arguments: --nthreads 8
[2025-10-12 16:19:41] Threads: 8
[2025-10-12 16:19:41] Checking for CVMFS
[2025-10-12 16:19:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:19:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:19:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:19:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:19:44] 2.13.2.0 2408171 129717 254544 151636 1 76 28564505 32935937 18248 16776704 0 190256394 99.604 207285922 30483 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 16:19:44] CVMFS is ok
[2025-10-12 16:19:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:19:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:19:44] Further information can be found at the LHC@home message board.
[2025-10-12 16:19:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:19:44] Checking for apptainer binary...
[2025-10-12 16:19:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:19:44] Running /usr/bin/apptainer --version
[2025-10-12 16:19:44] apptainer version 1.4.3-1.el9
[2025-10-12 16:19:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:19:45] c6-5-7-3.aglt2.org
[2025-10-12 16:19:45] apptainer works
[2025-10-12 16:19:45] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:19:45] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:19:45] Starting ATLAS job with PandaID=6840392526
[2025-10-12 16:19:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:41:05]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:41:05] 2025-10-12 22:40:11,277 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 18:41:05] 2025-10-12 22:40:11,402 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2773.120875
[2025-10-12 18:41:05] 2025-10-12 22:40:11,426 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840392526/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:41:05] 2025-10-12 22:40:11,427 | INFO     | extracted standard info from prmon json
[2025-10-12 18:41:05] 2025-10-12 22:40:11,427 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:41:05] 2025-10-12 22:40:11,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:41:05] 2025-10-12 22:40:11,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:41:05] 2025-10-12 22:40:11,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:41:05] 2025-10-12 22:40:11,441 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:41:05] 2025-10-12 22:40:11,442 | INFO     | sum of square deviations: 762880403.5259277
[2025-10-12 18:41:05] 2025-10-12 22:40:11,442 | INFO     | sum of deviations: -20716528059.340755
[2025-10-12 18:41:05] 2025-10-12 22:40:11,442 | INFO     | mean x: 1760304625.0592592
[2025-10-12 18:41:05] 2025-10-12 22:40:11,442 | INFO     | mean y: 2228169.7925925925
[2025-10-12 18:41:05] 2025-10-12 22:40:11,443 | INFO     | -- intersect: 47804478679.151825
[2025-10-12 18:41:05] 2025-10-12 22:40:11,443 | INFO     | intersect: 47804478679.151825
[2025-10-12 18:41:05] 2025-10-12 22:40:11,443 | INFO     | chi2: 2.431708216193322
[2025-10-12 18:41:05] 2025-10-12 22:40:11,443 | INFO     | sum of square deviations: 681216196.0076928
[2025-10-12 18:41:05] 2025-10-12 22:40:11,444 | INFO     | sum of deviations: -17864495828.8
[2025-10-12 18:41:05] 2025-10-12 22:40:11,444 | INFO     | mean x: 1760304472.5615385
[2025-10-12 18:41:05] 2025-10-12 22:40:11,444 | INFO     | mean y: 2233463.6
[2025-10-12 18:41:05] 2025-10-12 22:40:11,444 | INFO     | -- intersect: 46165187444.71536
[2025-10-12 18:41:05] 2025-10-12 22:40:11,444 | INFO     | intersect: 46165187444.71536
[2025-10-12 18:41:05] 2025-10-12 22:40:11,444 | INFO     | chi2: 2.4328044852450947
[2025-10-12 18:41:05] 2025-10-12 22:40:11,444 | INFO     | current chi2=2.4328044852450947 (change=-0.04508226128745756 %)
[2025-10-12 18:41:05] 2025-10-12 22:40:11,444 | INFO     | right removable region: 129
[2025-10-12 18:41:05] 2025-10-12 22:40:11,445 | INFO     | sum of square deviations: 681211316.0076928
[2025-10-12 18:41:05] 2025-10-12 22:40:11,445 | INFO     | sum of deviations: -44634298975.09998
[2025-10-12 18:41:05] 2025-10-12 22:40:11,445 | INFO     | mean x: 1760304777.5615385
[2025-10-12 18:41:05] 2025-10-12 22:40:11,445 | INFO     | mean y: 2272384.7
[2025-10-12 18:41:05] 2025-10-12 22:40:11,445 | INFO     | -- intersect: 115340887411.59909
[2025-10-12 18:41:05] 2025-10-12 22:40:11,446 | INFO     | intersect: 115340887411.59909
[2025-10-12 18:41:05] 2025-10-12 22:40:11,446 | INFO     | chi2: 0.36749436887888537
[2025-10-12 18:41:05] 2025-10-12 22:40:11,446 | INFO     | current chi2=0.36749436887888537 (change=84.88739864299288 %)
[2025-10-12 18:41:05] 2025-10-12 22:40:11,446 | INFO     | sum of square deviations: 605588853.4879987
[2025-10-12 18:41:05] 2025-10-12 22:40:11,447 | INFO     | sum of deviations: -42987292760.97602
[2025-10-12 18:41:05] 2025-10-12 22:40:11,447 | INFO     | mean x: 1760304930.064
[2025-10-12 18:41:05] 2025-10-12 22:40:11,447 | INFO     | mean y: 2268965.872
[2025-10-12 18:41:05] 2025-10-12 22:40:11,447 | INFO     | -- intersect: 124956258692.41867
[2025-10-12 18:41:05] 2025-10-12 22:40:11,451 | INFO     | intersect: 124956258692.41867
[2025-10-12 18:41:05] 2025-10-12 22:40:11,451 | INFO     | chi2: 0.3242294226697422
[2025-10-12 18:41:05] 2025-10-12 22:40:11,451 | INFO     | current chi2=0.3242294226697422 (change=11.772954873058735 %)
[2025-10-12 18:41:05] 2025-10-12 22:40:11,451 | INFO     | left removable region: 20
[2025-10-12 18:41:05] 2025-10-12 22:40:11,452 | INFO     | sum of square deviations: 401528235.6697241
[2025-10-12 18:41:05] 2025-10-12 22:40:11,452 | INFO     | sum of deviations: -31411082932.779827
[2025-10-12 18:41:05] 2025-10-12 22:40:11,452 | INFO     | mean x: 1760305052.0550458
[2025-10-12 18:41:05] 2025-10-12 22:40:11,452 | INFO     | mean y: 2258202.9633027525
[2025-10-12 18:41:05] 2025-10-12 22:40:11,452 | INFO     | -- intersect: 137708857802.0349
[2025-10-12 18:41:05] 2025-10-12 22:40:11,452 | INFO     | intersect: 137708857802.0349
[2025-10-12 18:41:05] 2025-10-12 22:40:11,453 | INFO     | chi2: 0.30671615629384386
[2025-10-12 18:41:05] 2025-10-12 22:40:11,453 | INFO     | -- intersect: 137708857802.0349
[2025-10-12 18:41:05] 2025-10-12 22:40:11,453 | INFO     | current memory leak: -78.23 B/s (using 109 data points, chi2=0.31)
[2025-10-12 18:41:05] 2025-10-12 22:40:11,453 | INFO     | could have reported an average CPU frequency of 2837 MHz (8 samples)
[2025-10-12 18:41:05] 2025-10-12 22:40:11,453 | INFO     | ..............................
[2025-10-12 18:41:05] 2025-10-12 22:40:11,453 | INFO     | . Timing measurements:
[2025-10-12 18:41:05] 2025-10-12 22:40:11,454 | INFO     | . get job = 0 s
[2025-10-12 18:41:05] 2025-10-12 22:40:11,454 | INFO     | . initial setup = 5 s
[2025-10-12 18:41:05] 2025-10-12 22:40:11,454 | INFO     | . payload setup = 30 s
[2025-10-12 18:41:05] 2025-10-12 22:40:11,454 | INFO     | . stage-in = 0 s
[2025-10-12 18:41:05] 2025-10-12 22:40:11,454 | INFO     | . payload execution = 8257 s
[2025-10-12 18:41:05] 2025-10-12 22:40:11,454 | INFO     | . stage-out = 2 s
[2025-10-12 18:41:05] 2025-10-12 22:40:11,454 | INFO     | . log creation = 0 s
[2025-10-12 18:41:05] 2025-10-12 22:40:11,454 | INFO     | ..............................
[2025-10-12 18:41:05] 2025-10-12 22:40:11,705 | INFO     | 
[2025-10-12 18:41:05] 2025-10-12 22:40:11,705 | INFO     | job summary report
[2025-10-12 18:41:05] 2025-10-12 22:40:11,705 | INFO     | --------------------------------------------------
[2025-10-12 18:41:05] 2025-10-12 22:40:11,705 | INFO     | PanDA job id: 6840392526
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | task id: 46676269
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | errors: (none)
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | pilot state: finished 
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | transexitcode: 0
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | exeerrorcode: 0
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | exeerrordiag: 
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | exitcode: 0
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | exitmsg: OK
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | cpuconsumptiontime: 36677 s
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | nevents: 400
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | neventsw: 0
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | pid: 4108939
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | pgrp: 4108939
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | corecount: 8
[2025-10-12 18:41:05] 2025-10-12 22:40:11,706 | INFO     | event service: False
[2025-10-12 18:41:05] 2025-10-12 22:40:11,707 | INFO     | sizes: {0: 2348573, 1: 2348657, 2: 2348856, 13: 2348856, 22: 2349174, 24: 2349202, 8291: 2377258, 8292: 2377257, 8295: 2386311, 8297: 2386367, 8329: 2386561}
[2025-10-12 18:41:05] 2025-10-12 22:40:11,707 | INFO     | --------------------------------------------------
[2025-10-12 18:41:05] 2025-10-12 22:40:11,707 | INFO     | 
[2025-10-12 18:41:05] 2025-10-12 22:40:11,707 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 18:41:05] 2025-10-12 22:40:11,957 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,958 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,958 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,958 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,958 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,958 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,958 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,959 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,959 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,959 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,959 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,959 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,959 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,960 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,960 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,960 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,961 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,961 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:41:05] 2025-10-12 22:40:11,961 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,961 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:41:05] 2025-10-12 22:40:11,961 | INFO     | job 6840392526 has completed (purged errors)
[2025-10-12 18:41:05] 2025-10-12 22:40:11,961 | INFO     | overall cleanup function is called
[2025-10-12 18:41:05] 2025-10-12 22:40:12,975 | INFO     | --- collectZombieJob: --- 10, [4108939]
[2025-10-12 18:41:05] 2025-10-12 22:40:12,980 | INFO     | zombie collector waiting for pid 4108939
[2025-10-12 18:41:05] 2025-10-12 22:40:12,993 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:41:05] 2025-10-12 22:40:12,998 | INFO     | collected zombie processes
[2025-10-12 18:41:05] 2025-10-12 22:40:13,004 | INFO     | will attempt to kill all subprocesses of pid=4108939
[2025-10-12 18:41:05] 2025-10-12 22:40:14,136 | INFO     | process IDs to be killed: [4108939] (in reverse order)
[2025-10-12 18:41:05] 2025-10-12 22:40:14,353 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:41:05] 2025-10-12 22:40:14,353 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:41:05] 2025-10-12 22:40:14,405 | INFO     | did not find any defunct processes belonging to 4108939
[2025-10-12 18:41:05] 2025-10-12 22:40:14,438 | INFO     | did not find any defunct processes belonging to 4108939
[2025-10-12 18:41:05] 2025-10-12 22:40:14,439 | INFO     | ready for new job
[2025-10-12 18:41:05] 2025-10-12 22:40:14,439 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:41:05] 2025-10-12 22:40:14,445 | INFO     | ***************************************
[2025-10-12 18:41:05] 2025-10-12 22:40:14,445 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:41:05] 2025-10-12 22:40:14,445 | INFO     | ***************************************
[2025-10-12 18:41:05] 2025-10-12 22:40:14,445 | INFO     | 
[2025-10-12 18:41:05] 2025-10-12 22:40:14,464 | INFO     | architecture information:
[2025-10-12 18:41:05] 2025-10-12 22:40:14,465 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:41:05] 2025-10-12 22:40:14,512 | INFO     | cat /etc/os-release:
[2025-10-12 18:41:05] NAME="CentOS Linux"
[2025-10-12 18:41:05] VERSION="7 (Core)"
[2025-10-12 18:41:05] ID="centos"
[2025-10-12 18:41:05] ID_LIKE="rhel fedora"
[2025-10-12 18:41:05] VERSION_ID="7"
[2025-10-12 18:41:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:41:05] ANSI_COLOR="0;31"
[2025-10-12 18:41:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:41:05] HOME_URL="https://www.centos.org/"
[2025-10-12 18:41:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:41:05] 
[2025-10-12 18:41:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:41:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:41:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:41:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:41:05] 
[2025-10-12 18:41:05] 2025-10-12 22:40:14,513 | INFO     | ***************************************
[2025-10-12 18:41:05] 2025-10-12 22:40:15,016 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 18:41:05] 2025-10-12 22:40:15,042 | INFO     | sufficient remaining disk space (75479646208 B)
[2025-10-12 18:41:05] 2025-10-12 22:40:15,042 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:41:05] 2025-10-12 22:40:15,044 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:41:05] 2025-10-12 22:40:15,044 | INFO     | update_server=False
[2025-10-12 18:41:05] 2025-10-12 22:40:15,044 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:41:05] 2025-10-12 22:40:15,129 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 18:41:05] 2025-10-12 22:40:15,129 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 18:41:05] 2025-10-12 22:40:15,130 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:41:05] 2025-10-12 22:40:15,130 | INFO     | will abort loop
[2025-10-12 18:41:05] 2025-10-12 22:40:15,732 | INFO     | all job control threads have been joined
[2025-10-12 18:41:05] 2025-10-12 22:40:15,749 | INFO     | all payload control threads have been joined
[2025-10-12 18:41:05] 2025-10-12 22:40:15,800 | INFO     | all data control threads have been joined
[2025-10-12 18:41:05] 2025-10-12 22:40:15,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:41:05] 2025-10-12 22:40:16,050 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:16,134 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:16,140 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:16,237 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:16,262 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:16,405 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:16,572 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:16,582 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:16,716 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:41:05] 2025-10-12 22:40:16,745 | INFO     | [job] control thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:16,755 | INFO     | [payload] control thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:16,813 | INFO     | [data] control thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:16,952 | INFO     | [job] validate thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:17,724 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:17,870 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:41:05] 2025-10-12 22:40:17,873 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:21,895 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:25,702 | INFO     | job.realtimelogging is not enabled
[2025-10-12 18:41:05] 2025-10-12 22:40:26,708 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:41:05] 2025-10-12 22:40:45,058 | INFO     | PID=4100382 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 18:41:05] 2025-10-12 22:40:45,059 | INFO     | .. there are 21 such processes running
[2025-10-12 18:41:05] 2025-10-12 22:40:45,059 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:41:05] 2025-10-12 22:40:45,059 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:41:05] 2025-10-12 22:40:45,059 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:41:05] 2025-10-12 22:40:56,948 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:41:05] 2025-10-12 22:40:58,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139762352514880)>', '<ExcThread(monitor, started 139761708685056)>']
[2025-10-12 18:41:05] 2025-10-12 22:40:58,193 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:41:05] 2025-10-12 22:40:58,193 | INFO     | [monitor] control thread has ended
[2025-10-12 18:41:05] 2025-10-12 22:41:03,104 | INFO     | all workflow threads have been joined
[2025-10-12 18:41:05] 2025-10-12 22:41:03,104 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:41:05] 2025-10-12 22:41:03,105 | INFO     | traces error code: 0
[2025-10-12 18:41:05] 2025-10-12 22:41:03,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:41:05] 2025-10-12 22:41:04,203 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:41:05] 2025-10-12 22:41:04,206 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:41:05] 2025-10-12 22:41:04,208 [wrapper] pilotpid: 4100382
[2025-10-12 18:41:05] 2025-10-12 22:41:04,212 [wrapper] Pilot exit status: 0
[2025-10-12 18:41:05] 2025-10-12 22:41:04,275 [wrapper] pandaids: 6840392526
[2025-10-12 18:41:05] 2025-10-12 22:41:04,581 [wrapper] cleanup supervisor_pilot  282116 4100383
[2025-10-12 18:41:05] 2025-10-12 22:41:04,585 [wrapper] Test setup, not cleaning
[2025-10-12 18:41:05] 2025-10-12 22:41:04,588 [wrapper] apfmon messages muted
[2025-10-12 18:41:05] 2025-10-12 22:41:04,591 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:41:05] 2025-10-12 22:41:04,620 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:41:05]  *** Error codes and diagnostics ***
[2025-10-12 18:41:05]     "exeErrorCode": 0,
[2025-10-12 18:41:05]     "exeErrorDiag": "",
[2025-10-12 18:41:05]     "pilotErrorCode": 0,
[2025-10-12 18:41:05]     "pilotErrorDiag": "",
[2025-10-12 18:41:05]  *** Listing of results directory ***
[2025-10-12 18:41:05] total 406800
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 12:42 pilot3.tar.gz
[2025-10-12 18:41:05] -rwx------. 1 boincer umatlas     36292 Oct 12 12:45 runpilot2-wrapper.sh
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 12:45 queuedata.json
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas       100 Oct 12 16:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:41:05] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 16:19 run_atlas
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas       105 Oct 12 16:19 job.xml
[2025-10-12 18:41:05] -rw-r--r--. 2 boincer umatlas 223149630 Oct 12 16:19 EVNT.46676267._004787.pool.root.1
[2025-10-12 18:41:05] -rw-r--r--. 2 boincer umatlas    569675 Oct 12 16:19 input.tar.gz
[2025-10-12 18:41:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:19 start_atlas.sh
[2025-10-12 18:41:05] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 16:19 shared
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas         0 Oct 12 16:19 boinc_lockfile
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas      2546 Oct 12 16:19 pandaJob.out
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas    975536 Oct 12 16:20 agis_schedconf.cvmfs.json
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas   1560580 Oct 12 16:20 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:41:05] drwx------. 5 boincer umatlas      4096 Oct 12 16:20 pilot3
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas 186502102 Oct 12 18:38 HITS.46676269._083987.pool.root.1
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas       529 Oct 12 18:39 boinc_task_state.xml
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas      1042 Oct 12 18:39 memory_monitor_summary.json
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas    364709 Oct 12 18:39 log.46676269._083987.job.log.tgz.1
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas        95 Oct 12 18:40 pilot_heartbeat.json
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas      7826 Oct 12 18:40 heartbeat.json
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas      6842 Oct 12 18:40 init_data.xml
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas        27 Oct 12 18:41 wrapper_checkpoint.txt
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 18:41 boinc_mmap_file
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas      5082 Oct 12 18:41 pilotlog.txt
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas   1137055 Oct 12 18:41 log.46676269._083987.job.log.1
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas       357 Oct 12 18:41 output.list
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas       620 Oct 12 18:41 runtime_log
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas   1525760 Oct 12 18:41 result.tar.gz
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 18:41 runtime_log.err
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas       652 Oct 12 18:41 JDeNDmINES8n9Rq4apOajLDm4fhM0noT9bVof3QYDmcSUMDmfnpkim.diag
[2025-10-12 18:41:05] -rw-r--r--. 1 boincer umatlas     21161 Oct 12 18:41 stderr.txt
[2025-10-12 18:41:05] HITS file was successfully produced:
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas 186502102 Oct 12 18:38 shared/HITS.pool.root.1
[2025-10-12 18:41:05]  *** Contents of shared directory: ***
[2025-10-12 18:41:05] total 402124
[2025-10-12 18:41:05] -rw-r--r--. 2 boincer umatlas 223149630 Oct 12 16:19 ATLAS.root_0
[2025-10-12 18:41:05] -rw-r--r--. 2 boincer umatlas    569675 Oct 12 16:19 input.tar.gz
[2025-10-12 18:41:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 16:19 start_atlas.sh
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas 186502102 Oct 12 18:38 HITS.pool.root.1
[2025-10-12 18:41:05] -rw-------. 1 boincer umatlas   1525760 Oct 12 18:41 result.tar.gz
18:41:27 (4090489): run_atlas exited; CPU time 36828.455865
18:41:27 (4090489): called boinc_finish(0)

</stderr_txt>
]]>

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